cluster # 6788

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6788 cluster # 6788 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6788#0 length = 661 sequences # 5

consensus_6788#1 length = 543 sequences # 1

consensusID : consensus_6788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 661
fasta sequence

                              [CCGCTTGACAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGCGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGATCAGCTCGAGCATTTTACGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATACTGTGGAGCGATACGCGAAAGCCAGTGCCTTCTAACAACGTACGGCCTATTTTTGCTGGTAATTCTAGTAGCAGAGGTGACGG]

[+] EMBL BM644326             [CCGCTTGACAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGCGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGATCAGCTCGAGCATTTTGCGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATACTGTGGAGCGATACGCGAAAGCCAGTGCCTTCTAACAACGTACGGCCTATTTTTGCTGGTAATTCTAGTAGCAGAGGTGACGG]
[+] EMBL BM651629             [CCG TTGACAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATAC AAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGCGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGATCAGCTCGAGCATTTTACGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATATTGTGGAGCGATACG                                                                    ]
[+] EMBL BM608775             [     ccgCAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGCGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGATCAGCTCGAGCATTTTGCGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATACTGTGGAGCG                                                                         ]
[+] EMBL CNS09ETT             [                        TACGGCGTGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGCCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTAACTGTGTGCAGTATCGCAAACTAACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGTGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTCATTGCGTTACTGAAAATGGTCGAAAACCATCAGCTCGAGCATTTTAC                                                                                                                                                                    ]
[+] EMBL BM610889             [                             ccgGTTCGTTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGTGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGATCAGCTCGAGCATTTTACGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATATTGTGGAGCGATACGCGAAAGCCAGTGCCTTC                                                   ]




>consensus_6788#0
CCGCTTGACAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATC
CAGAGCGATTCATTTCCGTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAGCCACAAG
AACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAACAGTAACAGTA
GTGTGTTAAGGTCATCTGCTGGTGTCGAGACATTAACCCCGACAATTTACTACATCTGCA
GAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACA
TTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACG
CTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGCGTGGGC
GTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAATGGTCGAAAACGAT
CAGCTCGAGCATTTTACGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTGCTGATTGTA
ATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATACTGTGGAGCGATACGCGAAAGC
CAGTGCCTTCTAACAACGTACGGCCTATTTTTGCTGGTAATTCTAGTAGCAGAGGTGACG
G

consensusID : consensus_6788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [ATCCCCCNAGGTTACGGCGCGAGTACGGCGTGTCGTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCCGTGGAATGCAGAGGAAGTACGTTGTTTCAACCAGAGGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTTAATTTGTAACATTAACCCCGACAATTTACTACATCTGCAAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTTAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGTGTGGGCGTATGGCTAGCTACAGATAAAACATCGTTTATAGCGTTACTGNAAAATGGTCGAAAACGATCAGCTCGAGCATTTTACGCAAACGGCAGTTATAGAGCAGTTAGCTTATCTGNTGATTG]

[+] EMBL AL694333             [ATCCCCCNAGGTTACGGCGCGAGTACGGCGTGTCGTGTATATGCCTGCTCACTAATCCAGAGCGATTCATTTCCCGTGGAATGCAGAGGAAGTACGTTGTTTCAACCAGAGGCCACAAGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAAACAGTAACAGTAGTGTGTTAAGGTCATCTGCTGGTGTTAATTTGTAACATTAACCCCGACAATTTACTACATCTGCAAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAAAACGCTACTATCCGTATTTAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGTGTGGGCGTATGGCTAGCTACAGATAAAACATCGTTTATAGCGTTACTGNAAAATGGTCGAAAACGATCAGCTCGAGCATTTTACGCAAACGGCAGTTATAGAGCAGTTAGCTTATCTGNTGATTG]




>consensus_6788#1
ATCCCCCNAGGTTACGGCGCGAGTACGGCGTGTCGTGTATATGCCTGCTCACTAATCCAG
AGCGATTCATTTCCCGTGGAATGCAGAGGAAGTACGTTGTTTCAACCAGAGGCCACAAGA
ACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAAACAGTAACAGTA
GTGTGTTAAGGTCATCTGCTGGTGTTAATTTGTAACATTAACCCCGACAATTTACTACAT
CTGCAAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAATCATC
AACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAGCAAA
AACGCTACTATCCGTATTTAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCGGTGT
GGGCGTATGGCTAGCTACAGATAAAACATCGTTTATAGCGTTACTGNAAAATGGTCGAAA
ACGATCAGCTCGAGCATTTTACGCAAACGGCAGTTATAGAGCAGTTAGCTTATCTGNTGA
TTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6788#0      CCGCTTGACAAGCGCGGTCGCGAGTACGGCGTGTTCGTTGTATATGCCTGCTCACTAATC 60
consensus_6788#1      -ATCCCCCNAGGTTACGGCGCGAGTACGGCGTGTCG--TGTATATGCCTGCTCACTAATC 57
                         *     * *    * ****************    **********************

consensus_6788#0      CAGAGCGATTCATTTCC-GTGGAATGCAGAGAAAGTACGTTGTTTCAACCAGAG-CCACA 118
consensus_6788#1      CAGAGCGATTCATTTCCCGTGGAATGCAGAGGAAGTACGTTGTTTCAACCAGAGGCCACA 117
                      ***************** ************* ********************** *****

consensus_6788#0      AGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAA-CAGTAACA 177
consensus_6788#1      AGAACATTAGCTTCTACAGATAAGCTATTGTTCTCAGAGTGATACAAAAAAACAGTAACA 177
                      *************************************************** ********

consensus_6788#0      GTAGTGTGTTAAGGTCATCTGCTGGTGTCGA-----GACATTAACCCCGACAATTTACTA 232
consensus_6788#1      GTAGTGTGTTAAGGTCATCTGCTGGTGTTAATTTGTAACATTAACCCCGACAATTTACTA 237
                      ****************************  *      ***********************

consensus_6788#0      CATCTGCAGAGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAAT 292
consensus_6788#1      CATCTGCA-AGTGTGACTGTGTGCAGTATCGCAAACTCACCGTGATCTTTGGCCGGCAAT 296
                      ******** ***************************************************

consensus_6788#0      CATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAG 352
consensus_6788#1      CATCAACATTCCCTTAACAGATCTCTTTCAACATGGGGTGCGACTGTGAATCATGCATAG 356
                      ************************************************************

consensus_6788#0      CAAAAACGCTACTATCCGTATTCAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCG 412
consensus_6788#1      CAAAAACGCTACTATCCGTATTTAATTTTCTATTCTTTGTCCTAGGAACAATTGTGCTCG 416
                      ********************** *************************************

consensus_6788#0      GCGTGGGCGTATGGCTAGCCACAGATAAAACATCGTTTATAGCGTTACTGAAAA-TGGTC 471
consensus_6788#1      GTGTGGGCGTATGGCTAGCTACAGATAAAACATCGTTTATAGCGTTACTGNAAAATGGTC 476
                      * ***************** ****************************** *** *****

consensus_6788#0      GAAAACGATCAGCTCGAGCATTTTACGCAACCGGCAGTTATAGAGCAGCTAGCTTATCTG 531
consensus_6788#1      GAAAACGATCAGCTCGAGCATTTTACGCAAACGGCAGTTATAGAGCAGTTAGCTTATCTG 536
                      ****************************** ***************** ***********

consensus_6788#0      CTGATTGTAATCGGATCGGTAATGTTCTTCCTCAGCTTCCTCGGATACTGTGGAGCGATA 591
consensus_6788#1      NTGATTG----------------------------------------------------- 543
                       ******                                                     

consensus_6788#0      CGCGAAAGCCAGTGCCTTCTAACAACGTACGGCCTATTTTTGCTGGTAATTCTAGTAGCA 651
consensus_6788#1      ------------------------------------------------------------
                                                                                  

consensus_6788#0      GAGGTGACGG 661
consensus_6788#1      ----------