These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1082 fasta sequence [CCGCCCACGCGTCCGCGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGAGCACGTGAAGAAGGTGCAGGTGCAGTACTGCGACCTGTGCAATATGTACCTGCCCCGGCGCACGGAAAATCAGGACCGCGTGCTGCGCGAACACTGCAAGAAGCGATCTCACCTGAAGCTGTACATCCGCTTCCGGAACGACAAGAAGCTGCGCGAACAGGCGGAACGCTTCCACAAGAAGAAGCTGAAGGGTGACAAGGAGGCTGCGGGAAAGAAGGGCGATGACAAGAAGGCAAACGATTCGATCACTTCCACCGACTCAAAGACGGTCACGGACGGTAATAGCACCGCGAACACGAACGACACAACCACCACGTCCAAATCGGAAGGTGAAACCCGATCGGACAAGAAAAGTGACACGGCCTCGACGGGTAGCGCAACCGAAAGCGCAAACAACGCAACGTCAGCTAAGGTGAACACTTCCAGCGCGAACAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGCTCGACGGAAGCAACAGCACCACCACCACCCTAGCGGCGACGATCGGTGGTGCCGATGGGCCCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGATCTGGGCGATCTGCTGCGCGACGTGCAGGACGACGCCGAGGAGGA-GACGACGATAAGACGAACCTGGAGCGCTACGACAAGTTCCGGCACACGGAGAAGAACGGCGGCGAGCAGCGATCGGATGCTGCCGGTGCGGACGAGGAGGATACCGTTGCCAGCAAAGGGCAGGCTAAAAAGGGAACGGCCGCGAACGGTGGTGGTGCCGAGGTGGCCGCTAATGGGGAAGCCTCCAAGGAGGCCAAACCCGCCGCGTAGGAATGTGTAGGGTATGTGTGTGTTTGTGTATCGAATTCATTACGATAAGGAAGCGTAGTTGTGTTTTTGAACTTAATATACTTATCGTAAGTAATAAGTGCACACGGTGCATACATTTAAGATAGTGTGCGCGCGCGTGTGTATTCAGTGTAGGCTATAGATCATTT] [+] EMBL BM604369 [CCGCCCACGCGTCCGCGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGAGCACGTGAAGAAGGTGCAGGTGCAGTACTGCGACCTGTGCAATATGTACCTGCCCCGGCGCACGGAAAATCAGGACCGCGTGCTGCGCGAACACTGCAAGAAGCGATCTCACCTGAAGCTGTACATCCGCTTCCGGAACGACAAGAAGCTGCGCGAACAGGCGGAACGCTTCCACAAGAAGAAGCTGAAGGGTGACAAGGAGGCTGCGGGAAAGAAGGGCGATGACAAGAAGGCAAACGATTCGATCACTTCCACCGACTCAAAGACGGTCACGGACGGTAATAGCACCGCGAACACGAACGACACAACCACCACGTCCAAATCGGAAGGTGAAACCCGATCGGAAAAGAAAAGTGACACGGCCTCGACGGGTAGCGCAACCGAAAGCGCAAACAACGCAACGTCAGCTAAGGTGAACACTTCCAGCGCGAACAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGCTCGACGGAAGCAACAGCACCACCACCACCCTAGCGGCGACGATCGGTGGTGCCGATGGGCCCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGATCTGGGCGATCTGCTGCGCGACGTGCAGGA ] [+] EMBL BM604384 [CCGCCCACGCGTCCGCGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGAGCACGTGAAGAAGGTGCAGGTGCAGTACTGCAACCTGTGC ] [+] EMBL BX605686 [ ACAACCTCCACGCCCAAATCGGAAGGTGAAACCCGATCGGACAAGAAAAGTGACACGGCCACGACAGGTAGCGCAACCGACAGCGCAAACAACGCAACGTCAGCTAAGGTGAACACTTCCAGCGCGAGCAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGATGGACGGAAGCAACAG CACCACCACCCTAGCGGCGACGATCGGTGGCGCCGATGGGCCCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGATCTGGGCGATCTGTTGCGCGACGTTCAGGACGACGCCGAGGAGGAGGACGACGATAAGACGAACCTGGAGCGCTACGACAAGTTCCGGCACACGGAGAAGAACGGCGGCGAGCAGCGATCGGATGCTGCCGGTGCGGACGAGGAGGATACCGTTGC ] [+] EMBL BM618822 [ ccGGTGAAACCCGATCGGACAAGAAAAGTGACACGGCCTCGACGGGTAGCGCAGCCGAAAGCGCAAACAACGCAACGTCAGCTAAGGTGAACACTTCCAGCGCGAACAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGCTCGACGGAAGCAACAGCACCACCACCACCCTGGCGACGACGATCGGTGGTGCCGATGGGCCCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGATCTGGGCGATCTGCTGCGCGACGTGCAGGACGACGCCGAGGAGGA GACGACGATAAGACGAACCTGGAGCGCTACGACAAGTTCCGGCACACGGAGAAGAACGGCGGTGAGCAGCGATCGGATGCCGCCGGTGCGGACGAGGAGGATACCGTTGCCAGCAAAGGGCAGGCTAAAAAGGGAACGGCCGCGAACGGTGGTGGTGCCGAGGTGGCCGCTAATGGGGAAGCCTCCAAGGAGGCCAAACCCGCCGCGTAGGAATGTGTAGGGTATGTGTGTGTTTGTGTATCGAATTCATTACGATAAGGAAGCGTAGTTGTGTTTTTGAACTTAATATACTTATCGTAAGTAATAAGTGCACACGGTGCATACATTTAAGATAGTGTGCGCGCGCGTGTGTATTCAGTGTAGGCTATAGATCATTT] [+] EMBL BM629624 [ gcccgtccgGCGAGCAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGCTGGACGGAAGCAACAG CACCACCACCCTAGCGGCGACGATCGGTGGCGCCGATGGGCCCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGATCTGGGCGATCTGTTGCGCGA ] consensusID : consensus_6789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence [CCGCGGACGCGTGGGGTGCCGGGAGCGGCTGCTGGAGATGCGGGCCGCCCAGCGCAACGCGCAGAAGGACGAGGACGAAAAGTCGGAGGACGGTGCCGGTGGCGATGAGGGCAAGCGGCCCGGCTTCTGCCTGCTGTGCCGGCTGAACTATCGGCAGCCGCGCGCCGTCCACCAGCAGTCCGAGGGGCACAAGATGATGAAGAAATTCCTCATGCCGTACTGTAGCGTGTGCAAGCTCGGCTTCAAGAGCCCGATGGCGTTCGAGACGCACCGTGCCTCGCTGGACCATCTGAAGATTAAGGCACGCGTGGAGCGGTACGCTTCGTCCACGAAGGGCGACGATTCGGGCGACGAGAACCAGGCCGAGGCGGGCGATCTCGACCTGGACAGCATGACGATCGTGGATGAGGTGGGCAAGGTGGATGACATTTGCGAGCCGGGTGTGGCGGGAGAAACGCCCACCAGGAAGCAGCGCAGCTACGGCGATGGTGGCGGCAGTGGTCGCGCAGGCACGGAGGGATGAGGATGACGAGGACGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGACCACGTGAAAGAAGGTGCAGGTGCAATACTGCGACCTGTGCAATATGTACCTGCCCCGGCGCACGGAAATTCAGGACCGCGTGCTGCGCGAACACTTGCAAGAAGCGATCTTCACCTGAAGCT] [+] EMBL BM606754 [CCGCGGACGCGTGGGGTGCCGGGAGCGGCTGCTGGAGATGCGGGCCGCCCAGCGCAACGCGCAGAAGGACGAGGACGAAAAGTCGGAGGACGGTGCCGGTGGCGATGAGGGCAAGCGGCCCGGCTTCTGCCTGCTGTGCCGGCTGAACTATCGGCAGCCGCGCGCCGTCCACCAGCAGTCCGAGGGGCACAAGATGATGAAGAAATTCCTCATGCCGTACTGTAGCGTGTGCAAGCTCGGCTTCAAGAGCCCGATGGCGTTCGAGACGCACCGTGCCTCGCTGGACCATCTGAAGATTAAGGCACGCGTGGAGCGGTACGCTTCGTCCACGAAGGGCGACGATTCGGGCGACGAGAACCAGGCCGAGGCGGGCGATCTCGACCTGGACAGCATGACGATCGTGGATGAGGTGGGCAAGGTGGATGACATTTGCGAGCCGGGTGTGGCGGGAGAAACGCCCACCAGGAAGCAGCGCAGCTACGGCGATGGTGGCGGCAGTGGTCGCGCAGGCACGGAGGGATGAGGATGACGAGGACGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGACCACGTGAAAGAAGGTGCAGGTGCAATACTGCGACCTGTGCAATATGTACCTGCCCCGGCGCACGGAAATTCAGGACCGCGTGCTGCGCGAACACTTGCAAGAAGCGATCTTCACCTGAAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6789#0 CCGCCCACGCGTCCGCGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCAT 60 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 CGGCGAGGAGCACGTGAAGAAGGTGCAGGTGCAGTACTGCGACCTGTGCAATATGTACCT 120 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 GCCCCGGCGCACGGAAAATCAGGACCGCGTGCTGCGCGAACACTGCAAGAAGCGATCTCA 180 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 CCTGAAGCTGTACATCCGCTTCCGGAACGACAAGAAGCTGCGCGAACAGGCGGAACGCTT 240 consensus_6789#1 ---------CCGCGGACGCGTGGGGTGCCGGGAGCGGCTGC-TGGAGATGCGGGCCGC-- 48 * *** * ** * ** ***** * * * **** *** consensus_6789#0 CCACAAGAAGAAGCTGAAGGGTGACAAGGAGGCTGCGGGAAAGAAGGGCGATGACAA-GA 299 consensus_6789#1 CCAGCGCAACGCGCAGAAGGACGAGGACGAAAAGTCGGAGGACGGTGCCGGTGGCGATGA 108 *** ** ** ***** ** * ** *** * * ** ** * * ** consensus_6789#0 AGGCAAACGATTCGATCACTTCCACCGACTCAAAGACGGTCACGGACGGTAATAGCACCG 359 consensus_6789#1 GGGCAAGCGGCCCGG---CTTCTGCCTGCTGTGCCGGCTGAACTATCGGCAGCCGCGCGC 165 ***** ** ** **** ** ** ** *** * ** * consensus_6789#0 CGAACACGAACGACACAACCACCACGTCCAAATCGGAAGGTGAAACCCGATCGGACAAGA 419 consensus_6789#1 CGTCCACCAGCAGTCCGAGGGGCACA---AGATGATGAAGAAATTCCTCATGCCGTACTG 222 ** *** * * * * *** * ** * * * ** ** * consensus_6789#0 AAAGTGACACGGCCTCGACGGGTAGCGCAACCGAAAGCGCAAACAACGCAACGTCAGCTA 479 consensus_6789#1 TAGCGTGTGCAAGCTCGGCTTCAAGAGC--CCGATGGCGTTCGAGACGCACCGT--GCCT 278 * * **** * ** ** **** *** ***** *** ** consensus_6789#0 AGGTGAACACTTCCAGCGCGAACAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGC 539 consensus_6789#1 CGCTGGACCATCTGAA---GATTAAGGCACGCGTGGA----------GCGGTACGCTTCG 325 * ** ** * * ** ** * *** ** *** **** consensus_6789#0 TCGACGGAAGCAACAGCACCACCACCACCCTAGCGGCGACGATCGGTGGTGCCGATGGGC 599 consensus_6789#1 TCCACGAAGG----------GCGACGATTCGGGCGACGAGAACCAG----GCCGA----- 366 ** *** * * * ** * * *** *** * * * ***** consensus_6789#0 CCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAG 659 consensus_6789#1 --GGCGGGCGATC--TCGACCTGGACAGCATGACGATCGTGGATGAGGTGGGCAAGGTGG 422 **** ** ** *** **** * ** * *** * * * ***** *** * * consensus_6789#0 ATC---TGGGCGATCTGCTGCGCGACGTGCAGGACGACGCCGAGGAGGAGACGACGATAA 716 consensus_6789#1 ATGACATTTGCGAGCCGG-GTGTGGCGGGAGAAACGCCCACCAGGAAGCAGCGCAGCTAC 481 ** * **** * * * * * ** * *** * * **** * ** * ** consensus_6789#0 GACGAACCTGGAGCGCTACGACAAGTTCCGGCACACGGAGAAGAACGGCGGCGAGCAGCG 776 consensus_6789#1 GGCGATGGTGGCG-GCAGTGGTC-GCGCAGGCACGGAGGGATGAG-GATGACGAGGACGA 538 * *** *** * ** * * * ***** * ** ** * * **** * consensus_6789#0 ATCGGATGCTGCCGGTGCGGACGAGGAGGAT---ACCGTTGCCAGCAAAGGGCAGGCTAA 833 consensus_6789#1 CGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGACCACGTGAA 598 **** ** * * ****** ** ** * * * ** * * ** * ** consensus_6789#0 AAAGGGAACGGCCGCGA-ACGGTGGTGGTGCCGAGGTGGCCGCTAATGGGGAAGCCTCCA 892 consensus_6789#1 AGAAGGTGCAGGTGCAATACTGCGACCTGTGCAATATGTAC-CTGCCCCGGCGCACGGAA 657 * * ** * * ** * ** * * * * ** * ** ** * * consensus_6789#0 AGGAGGCCAAACCCGCCGCGTAGGAATGTGTAGGGTATGTGTGTGTTTGTGTATCGAATT 952 consensus_6789#1 ATTCAGGACCGCGTGCTGCGCGAACACTTGCAAGAAGCG-----ATCTTCACCTGAAGCT 712 * * * ** *** * ** * * * * * * * * consensus_6789#0 CATTACGATAAGGAAGCGTAGTTGTGTTTTTGAACTTAATATACTTATCGTAAGTAATAA 1012 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 GTGCACACGGTGCATACATTTAAGATAGTGTGCGCGCGCGTGTGTATTCAGTGTAGGCTA 1072 consensus_6789#1 ------------------------------------------------------------ consensus_6789#0 TAGATCATTT 1082 consensus_6789#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||