These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1378 fasta sequence [CCGAAGAAACTTTGTTTTGTTGCAATATAGGATATAAAGGAGCAGTTAAACTCATAACTACATGTATCATCTATGACACTCTTAGCTAGGTAAGAATTTAGGATAATGGAAAGTTTCCCACCCGTTTCTCTTGCTCCGTTTATCTCGCTCTCACTCTCTTTCGTGTCCCATTCCACGCGGAATTTCCAACTCGGCTTATGACGAGTGGAAAACAAGTAGGTTAGCGTAGGATTTCAAATGTAGGATTTTCCTGACCCCTCACGTGGCGTCACTCAACCACAGGCCAGCGGAATTCCCAATGCCGTTCCATGCGATATATGTTGGTCGAGATGACGATTCGAACTTACTAACTGACGAAAGATTTGATTAGAAATGTGATACTTTAGCTACGGGATATTTACACCGAAAGAGGGAAGAA--ACACACATACACACACATACACACACTTACTATTATTGTACACGGCGATAGGTTTATAGGCAAATTTATAGTTATATATACGAGCAAAACGGGACAGATGAAGATTAATGCGTGGAGACAGTGCAACTGGCGCACGACAGAGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGTAAATTAATTGTCCATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGTGTGTGTGTGTTGCATATTTATACAACAATTATACCTGATATTTCGTTTCTACTGTAATTCAGCTACAGTGGATAGGGTTGTTCCACCTTTACAAAAAAAAGCTCAAATTTAATCACCAGCACACACGATTGCGTAATTTCTTGATTCAATATTTATCCCATTGCTGCAGAGTGTTCTATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATAAATCGTAAACTATTTTTCCATTTTGAGGCTTAAAACTTAATGAAAAGCAATTGAAGAGATTTCTGTGCTCGCTCTTGTACATCTTGTAGCTTGGGTGGATTGTTAGGGAAAGAAATTGTGCAGCATAAGCGCAGATTAGTTTGCCTGCTCCAATCCAAGGCGACGGCGCACACCGAATTGACCACTATTAAGGAGCGAGGGTTCGATATTACGATATTACATTAATAACAATAATAATATTCGCAAATGTTTTGGGTGCTATTACTTTGGATAAATGTGAGAAGCGGTTCTCATCGTCGGAGANGCAAACACCGTCCGGTACCACGGTGAATGATTCGCATTTTACACGTGGACGCGGACGGCTACCTTTCTAGAGTCTATTACAATGGTACAATTCCTAAGGGGTAGCGAC] [+] EMBL BM604132 [CCGAAGAAACTTTGTTTTGTTGCAATATAGGATATAAAGGAGCAGTTAAACTCATAACTACATGTATCATCTATGACACTCTTAGCTAGGTAAGAATTTAGGATAATGGAAAGTTTCCCACCCGTTTCTCTTGCTCCGTTTATCTCGCTCTCACTCTCTTTCGTGTCCCATTCCACGCGGAATTTCCAACTCGGCTTATGACGAGTGGAAAACAAGTAGGTTAGCGTAGGATTTCAAATGTAGGATTTTCCTGACCCCTCACGTGGCGTCACTCAACCACAGGCCAGCGGAATTCCCAATGCCGTTCCATGCGATATATGTTGGTCGAGATGACGATTCGAACTTACTAACTGACGAAAGATTTGATTAGAAATGTGATACTTTAGCTACGGGATATTTACACCGAAAGAGGGAAGAA ACACACATACACACACATACACACACTTACTATTATTGTACACGGCGATAGGTTTATAGGCAAATTTATAGTTATATATACGAGCAAAACGGGACAGATGAAGAT ] [+] EMBL BM610045 [ ccgCTCGGCTTATGACGAGTGGAAAACAAGTAGGTTAGCGTAGGATTTCAAATGTAGGATTTTCCTGACCCCTCACGTGGCGTCACTCAACCACTGGCCAGCGGAGTTCCCAATGCCGTTCCACGCGATATATGTTGGTCGAGATGACGATTCGAACTTACTAACTGACGAAAGATTTGATTAGAAATGTGATACTTTAGCTACGGGATATTTACACCGAAAGAGGGAAGAAACACACACACACACACACATACACACACTTACTATTATTGTACACGGCGATAGGTTTATAGGCAAATTTATAGTTATATATACGAGCAAAACGGGACAGATGAAGATTAATGCGTGGAGACAGTGCAACTGGCGCACGACAGAGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAA ] [+] EMBL BX608046 [ CAAAAGGCGCACGACAGAGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGTAAATTAATTGTCCATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGTGTGTGTGTGTTGCATATTTATACAACAATTATACCTGATATTTCGTTTCTACTGTAATTCAGCTACAGTGGATAGGGTTGTTCCACCTTTACAAAAAAAAGCTCAAATTTAATCACCAGCACACACGATTGCGTAATTTCTTGATTCAATATTTATCCCATTGCTGCAGAGTGTTCTATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATAAATCGTAAACTATTTTTCCATTTTGAGGCTTAAAACTTAATGAAAAGCAATTGAAGAGATTTCTGTGCTCGCTCTTGTACATCTTGTAGCTTGGGTGGATTGTTAGGGAAAGAAATTGTGCAGCATAAGCGCAGATTAGTTTGCCTGCTCCAATCCAAGGCGACGGCGCACACCGAATTGACCACTATTAAGGAGCGAGGGTTCGATATTACGATATTACATTAATAACAATAATAATATTCGCAAATGTTTTGGGTGC ] [+] EMBL BX626704 [ AATTAATTGTCCATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGTGTGTGTGTGTTGCATATTTATACAACAATTATACCTGATATTTCGTTTCTACTGTAATTCAGCTACAGTGGATAGGGTTGTTCCACCTTTACAAAAAAAAGCTCAAATTTAATCACCAGCACACACGATTGCGTAATTTCTTGATTCAATATTTATCCCATTGCTGCAGAGTGTTCTATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATAAATCGTAAACTATTTTTCCATTTTGAGGCTTAAAACTTAATGAAAAGCAATTGAAGAGATTTCTGTGCTCGCTCTTGTACATCTTGTAGCTTGGGTGGATTGTTAGGGAAAGAAATTGTGCAGCATAAGCGCAGATTAGTTTGCCTGCTCCAATCCAAGGCGACGGCGCACACCGAATTGACCACTATTAAGGAGCGAGGGTTCGATATTACGATATTACATTAATAACAATAATAATATTCGCAAATGTTTTGGGTGCTATTACTTTGGATAAATGTGAGAAGCGGTTCTCATCGTCGGAGANGCAAACACCGTCCGGTACCACGGTGAATGATTCGCATTTTACACGTGGACGCGGACGGCTACCTTTCTAGAGTCTATTACAATGGTACAATTCCTAAGGGGTAGCGAC] consensusID : consensus_6795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [GCAGAATCGCCACGAGNGTAATTATGCGTGGAGACAGTGCACACTGGCGCACGACAGAGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGTAAATTAATTGTACATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGTGTGTGTTGCATATTTATACATCAATCATACCTGGATACTTCGTCTCTACTGTAATTCGGCTACAGTGGATAGCGTTGTTTCACCTTTACAAGAAAAAGCTCAAATTTAATCACCAGCACACACGGTTGCGTTATTTCTTGGTTCAATATTTATCCCATTGCTGCAGAGATGTTCTATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATCAATCGTAAACTATTGTTTGCCATGTTTGAGGCTTAAAACTTAACTGAAAGAGCAATTGAAGAGATTTCTGGTGCTCGCTCTTGTACATCTTGTAGCTNGGGGTGGATNGTCAAAGGGAAATTGGAATTGTGCAGGCATAAGCGCAGATATACCGATAGTNCGGTCTGCTCCCAATGTAATGGCAAACGGGGCACACACGAAATGGAACAACTAT] [+] EMBL BX468994 [GCAGAATCGCCACGAGNGTAATTATGCGTGGAGACAGTGCACACTGGCGCACGACAGAGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGTAAATTAATTGTACATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGTGTGTGTTGCATATTTATACATCAATCATACCTGGATACTTCGTCTCTACTGTAATTCGGCTACAGTGGATAGCGTTGTTTCACCTTTACAAGAAAAAGCTCAAATTTAATCACCAGCACACACGGTTGCGTTATTTCTTGGTTCAATATTTATCCCATTGCTGCAGAGATGTTCTATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATCAATCGTAAACTATTGTTTGCCATGTTTGAGGCTTAAAACTTAACTGAAAGAGCAATTGAAGAGATTTCTGGTGCTCGCTCTTGTACATCTTGTAGCTNGGGGTGGATNGTCAAAGGGAAATTGGAATTGTGCAGGCATAAGCGCAGATATACCGATAGTNCGGTCTGCTCCCAATGTAATGGCAAACGGGGCACACACGAAATGGAACAACTAT] consensusID : consensus_6795#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 112 fasta sequence [ATCACGCTCTCACTCTCTTGCGTGTCCCATTCCACGCGGAAATACCAACTCGGCTTATGACGAGTGGAAAACAAGTAGGTTAGCGTAGGAATTCAAATGTAGGAATGGCCTG] [+] EMBL BX617887 [ATCACGCTCTCACTCTCTTGCGTGTCCCATTCCACGCGGAAATACCAACTCGGCTTATGACGAGTGGAAAACAAGTAGGTTAGCGTAGGAATTCAAATGTAGGAATGGCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6795#0 ------------------------------------------------------------ consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 GCAGAATCGCCACGAGNGTAATTATGCGTGGAGACAGTGCACACTGGCGCACGACAGAGA 60 consensus_6795#0 ------------------------------------------------------------ consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 AGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGG 120 consensus_6795#0 ------------------------------------------------------------ consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 CAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGTAAA 180 consensus_6795#0 ------------------------------------------------------------ consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 TTAATTGTACATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGT 240 consensus_6795#0 ----------------------------------------CCGAAGAAACTTTGTTTTGT 20 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 GTGTGTTGCATATTTATACATCAATCATACCTGGATACTTCGTCTCTACTGTAATTCGGC 300 consensus_6795#0 TGCAATATAGGATATAAAGGAGCAGTTAAACTCATAACTACATGTATCATCTATGACACT 80 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 TACAGTGGATAGCGTTGTTTCACCTTTACAAGAAAAAGCTCAAATTTAATCACCAGCACA 360 consensus_6795#0 CTTAGCTAGGTAAGAATTTAGGATAATGGAAAGTTTCCCACCCGTTTCTCTTGCTCCGTT 140 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 CACGGTTGCGTTATTTCTTGGTTCAATATTTATCCCATTGCTGCAGAGATGTTCTATAGT 420 consensus_6795#0 TATCTCGCTCTCACTCTCTTTCGTGTCCCATTCCACGCGGA--ATTTCCAACTCGGCTTA 198 consensus_6795#2 -ATCACGCTCTCACTCTCTTGCGTGTCCCATTCCACGCGGA--AATACCAACTCGGCTTA 57 consensus_6795#1 CGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATCAATCGTAAACTATTGTT 480 * * ** ** * ** ** * * * * * * * ** * consensus_6795#0 TGACGAGTGGAAAACAAGTAGGTTAGCGTAGGATTTCAAATGTAGGATTTTCCTGACCCC 258 consensus_6795#2 TGACGAGTGGAAAACAAGTAGGTTAGCGTAGGAATTCAAATGTAGGAATGGCCTG----- 112 consensus_6795#1 TGCCATGTTTGAGGCTTAAAACTTAAC-TGAAAGAGCAATTGAAGAGATTTCTGGTGCTC 539 ** * ** * * * *** * * * *** ** ** * * * consensus_6795#0 TCACGTGGCGTCACTCAACCACAGGCCAGCGGAATTCCCAATGCCGTTCCATGCGATATA 318 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 GCTCTTGTACATCTTGTAGCTNGGGGTGGATNGTCAAAGGGAAATTGGAATTGTGCAGGC 599 consensus_6795#0 TGTTGGTCGAGATGACGATTCGAACTTACTAACTGACGAAAGATTTGATTAGAAATGTGA 378 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ATAAGCGCAGATATACCGATAGTNCGGTCTGCTCCCAATGTAATGGCAAACGGGGCACAC 659 consensus_6795#0 TACTTTAGCTACGGGATATTTACACCGAAAGAGGGAAGAAACACACATACACACACATAC 438 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ACGAAATGGAACAACTAT------------------------------------------ 677 consensus_6795#0 ACACACTTACTATTATTGTACACGGCGATAGGTTTATAGGCAAATTTATAGTTATATATA 498 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 CGAGCAAAACGGGACAGATGAAGATTAATGCGTGGAGACAGTGCAACTGGCGCACGACAG 558 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 AGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTA 618 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 GGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGT 678 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 AAATTAATTGTCCATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTG 738 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 TGTGTGTGTGTGTTGCATATTTATACAACAATTATACCTGATATTTCGTTTCTACTGTAA 798 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 TTCAGCTACAGTGGATAGGGTTGTTCCACCTTTACAAAAAAAAGCTCAAATTTAATCACC 858 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 AGCACACACGATTGCGTAATTTCTTGATTCAATATTTATCCCATTGCTGCAGAGTGTTCT 918 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 ATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATAAATCGTAAACTA 978 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 TTTTTCCATTTTGAGGCTTAAAACTTAATGAAAAGCAATTGAAGAGATTTCTGTGCTCGC 1038 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 TCTTGTACATCTTGTAGCTTGGGTGGATTGTTAGGGAAAGAAATTGTGCAGCATAAGCGC 1098 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 AGATTAGTTTGCCTGCTCCAATCCAAGGCGACGGCGCACACCGAATTGACCACTATTAAG 1158 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 GAGCGAGGGTTCGATATTACGATATTACATTAATAACAATAATAATATTCGCAAATGTTT 1218 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 TGGGTGCTATTACTTTGGATAAATGTGAGAAGCGGTTCTCATCGTCGGAGANGCAAACAC 1278 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 CGTCCGGTACCACGGTGAATGATTCGCATTTTACACGTGGACGCGGACGGCTACCTTTCT 1338 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 ------------------------------------------------------------ consensus_6795#0 AGAGTCTATTACAATGGTACAATTCCTAAGGGGTAGCGAC 1378 consensus_6795#2 ---------------------------------------- consensus_6795#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||