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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1412 fasta sequence
[CCGCAGGCAGGCGGGCAGCACGAGACGTTTGAACTTGTGTGGCGTGTAAATATAAACACAAGCCCGTTCACTCCGTACCGCGCATTACACGATACGCGGTGCAGCTTGCAACTGCACGC-AAACCTG-CTTGCGCTAATTTGTCCGCAACTGCTCCACACGCAGAGGTCAAAAGAACGCGAGCCTCGGTTTATCTCCATCACCACGTGAAGTGATTGAACACGCTTTCACACAGGCTCGCCCGCAAGCAATGCCCAACGACGATACAACATCTGATGACATGCCAAACGGCGCTGGTGCAGCAGCGAAACGGTGGCTGCCAGCGAGCCTGATCGATGGCCACGGGCTGGACGACGGGCTCGGGATTGTGCTGCTGAATCGACCGATCCTGCTGGAGAAACACTACTTCACAACGCTATGGAATGGTGCAAAGGTGCGCGTA-CCGTCGACGGTGGAACGAACCGCTGGGTCGACTGGGTGAAGGGCAACATCAACAGCGAACACCTGCTCAAACCGCCCGATCTCGTGACCGGTGATTTCGACTCGTGCAACCAGGAGGCCATGGAGTACGTCGAGCAGCTGAAATGCACGATCGTTCACACGCCCGATCAAAATGCGACCGATTTCACCAAATCGCTGAAGGTGCTGAAATCGCACGGCTACGACAAGCAGCTGTCGCGCGTGCTGGCCCTCTGCGAATCGTCCGGCCGGCTCGACCAGATAATGGCCAACATCAACACGCTCTACCTGGCGGACGGCATTCTGCCCGGCGTGGACGTGTTTCTGCGATCGAGCAATTCACTATCCTGGTTGGTGCGGCCGGGCGAGCACACCATCGACATTCCGCAGCGACTCGTGAGCGAGCGGATCTGGTGTTCGCTCGTCCCGATCGGTCAGGGCTGCCAGTGTACGACCGACGGGCTGCGGTGGAATCTGGACGGCAGCAGGCCGCTTCAGTTCGGCAGTATTGTAAGTACCTCCAACACGTACGCGACCAACCGGGTACGCATCACGACCGACGGGCCGCTGCTGTGGTCCATGGGAACAACGCCGAAAGATATGTGATAGTAGGGGGGAAAAGGGAGAGGCGCGGGGAGAATGATTTTACCGTGTGACCTGCTGTGGAAAGCTTCAGAGTAATTGTGGCAAAG-CAGCAACTATGTTGCATCGCTTCCTTGGATTGGAATCTAAACGTCTGCCCGGCACGTGCACGGGGATAAATGAATGCAGTTGCGTCCTTTTGGCACCGTTAAACGTTCCCTGTTAAACCGAAAGGATGGTTTTAAAAGCTTGCATTTTAGTGACCCTTTGTTTGTGTCCCAAAACAACAACAACAACAAAAGCTGATTGTTTCCGCGGGACATGTATTAAAGCCCTGTACAATGTTGTAAATTTGATAAAAAGCGTGACAAAAC]
[+] EMBL BM609933 [CCGCAGGCAGGCGGGCAGCACGAGACGTTTGAACTTGTGTGGCGTGTAAATATAAACACAAGCCCGTTCACTCCGTACCGCGCATTACACGATACGCGGTGCAGCTTGCAACTGCACGC AAACCTG CTTGCGCTAATTTGTCCGCAACTGCTCCACACGCAGAGGTCAAAAGAACGCGAGCCTCGGTTTATCTCCATCACCACGTGAAGTGATTGAACACGCTTTCACACAGGCTCGCCCGCAAGCAATGCCCAACGACGATACAACATCTGATGACATGCCAAACGGCGCTGGTGCAGCAGCGAAACGGTGGCTGCCAGCGAGCCTGATCGATGGCCACGGGCTGGACGACGGGCTCGGGATTGTGCTGCTGAATCGACCGATCCTGCTGGAGAAACACTACTTCACAACGCTATGGAATGGTGCAAAGGTGCGCGTAGCCGTCGACGGTGGAACGAACCGCTGGGTCGACTGGGTGAAGGGCAACATCAACAGCGAACACCTGCTCAAACCGCCCGATCTCGTGACCGGTGATTTCGACTCGTGCAACCAGGAGGCCATGGAGTACGTCGAGCAGCTGAAATGCACGATCGTTCACACGCCCGATCAA ]
[+] EMBL CNS09R2N [ GGTGCCGCTTGCAACTGCACGCAAAACCTGTTTTGCGCTAATTTGTCCGCAACTGCTCCACACGCAGAGGTCAAAAGAACGCGAGCCTCGGTTTATCTCCATCACCACGTGAAGTGATTGAACACGCTTTCCCACAGGCTCGCTCGCAAGCAATGCCCAACGACGATACAACATCTGATGACATGCCAAACGGCGCTGGTGCAGCAGCGAAACGGTGGCTGCCAGCGAGCCTGATCGATGGCCACGGGCTGGACGACGGGCTCGGGATTGTGCTGCTGAATCGACCGATCCTGCTGGAGAAACACTACTTCACAACGCTATGGAATGGTGCAAAGGTGCGCGTA CCGTCGACGGTGGAACGAACCGCTGGGTCGACTGGGTGAAGGGCAACATCAACAGCGAACACCTGCTCAAACCGCCCGATCTCGTGACCGGTGATTTCGACTCGTGCAACCAGGAGGCCATGGAGTACGTCGAGCAGCTGAAATGCACGATCGTTCACACGCCCGATCAAAATGCGACCGATTTCACCAAATCGCTGAAGGTGCTGAAATCGCACGGCTACGACAAGCAGCTGTCGCGCGTGCTGGCCCTCTGCGAATCGTCCGGCCGGCTCGACCAGATAATGGCCAACATCAACACGCTCTACCTGGCGGACGGCATTCTGCCCGGCGTGGACGTGTTTCTGCGATCGAGCAATTCACTGTCCTGGTTGGTGCGGCCGGGCGAGCACACCATCGACATTCCGCAGCGACTCGTGAGCGAGCGGATCTGGTGTTCGCTCGTCCCGATCGGTCAGGGCTGCCAGTGTACGACCGACGGGCTGCGGTGGAATCTGGACGGCAGCAGG CGCTTCAGTTCGGCAGTATTGTAAGCACCTCCAACACGTACGCGACCAACCGGGTACGCATCACGACCGACGGGCCGCTGCTGTTGTCCATGGGAACAACGCCGAAAGAAATGTTATAAAAGGGGGG ]
[+] EMBL CNS09P3B [ CTGATGACATGCCAAACGGCGCTGGTGCAGCAGCGAAACGGTGGCTGCCAGCGAGCCTGATCGATGGCCACGGGCTGGACGACGGGCTCGGGATTGTGCTGCTGAATCGACCGATCCTGCTGGAGAAACACTACTTCACAACGCTATGGAATGGTGCAAAGGTGCGCGTA GCGTCGACGGTGGAACGAACCGCTGGGTCGACTGGGTGAAGGGCAACATCGACAGCGAACACCTGCTCAAACCGCCCGATCTCGTGACCGGTGATTTCGACTCGTGCAACCAGGAGGCCATGGAGTACGTCGAGCAGCTGAAATGCACGATCGTTCACACGCCCGATCAAAATGCGACCGATTTCACCAAATCGCTGAAGGTGCTGAAATCGCACGGCTACGACAAGCAGCTGTCGCGCGTGCTGGCCCTCTGCGAATCGTCCGGCCGGCTCGACCAGATAATGGCCAACATCAACACGCTCTACCTGGCGGACGGCATTCTGCCCGGCGTGGACGTGTTTCTGCGATCGAGCAATTCACTATCCTGGTTGGTGCGGCCGGGCGAGCACACCATCGACATTCCGCAGCGACTCGTGAGCGAGCGGATCTGGTGTTCGCTCGTCCCGATCGGTCAGGGCTGCCAGTGTACGACCGACGGGCTGCGGTGGAATCTGGACGGCAGCAGGCCGCTTCAGTTCGGCAGTATTGTAAGTACCTCCAACACGTACGCGACCAACCGGGTACGCATCACGACCGACGGGCCGCTGCTGTGGTCCATGGGAACAACGCCGAAAGATATGTGATAGTAGGGGGGAAAAGGGAGAGGCGCGGGGAGAATGATTTTACCGTGTGACCTGCTGTGGAAAGCTTCAGAGTAATTGTGGCAAAG CAGCAACTATGTTGCATCGCTTCCTTGGATTG ]
[-] EMBL CNS09P3C [ GATTTCCACTCGTGCAACCAGGAGGCCATGGAGTACGTCGAGCAGCTGAAATGCACGATCGTTTAAACGCCCGATCAAAATGCGACCGATTTCACCAAATCGCTGAAGGTGCTGAAATCGCACGGCTACGACAAGCCGGTTTCGCGCGTGCTGGCCCTCTGCGAATCGTCCGGCCGGCTCGACCAGATAATGGCCAACATCAACACGCTCTACCTGGCGGACGGCATTCTGCCCGGCGTGGACGTGTTTCTGCGATCGAGCAATTAACTATCCTGGTTGGTGCGGCCGGGCGAGAACACCATCGACATTCCGCAGCAACTCGTGAGCGAGCGGGTCTGGTGTTCGCTCGTCCCGATCGGTCAGGGCTGCCAGTGTACGACCGACGGGCTGCGGTGGAATCTGGACGGCAGCAGGCCGCTTCAGTTCGGCAGTATTGTAAGTACCTCCAAAACGTACGCGACCAACCGGGTACGCATCACGACCGACGGGCCGCTGCTGTGGTCCATGGGAACAACGCCGAAAGATATGTGATAGTAGGGGGGAAAAGGGAGAGGCGCGGGGAGAATGATTTTACCGTGTGACCTGCTGTGGAAAGCTTCAGAGTAATTGT GCAAAGCCAGCAACTTTGTTGCATCGCTTCCTTGGATTGGAATCTAAACGTCTGCCCGGCACGTGCACGGGGATAAATGAATGCAGTTGCGTCCTTTTGGCACCGTTAAACGTTCCCTGTTAAACCGAAAGGATGGTTTTAAAAGCTTGCATTTTAGTGACCCTTTGTTTGTGTCCCAAAACAACAACAACAACAAAAGCTGATTGTTTCCGCGGGACATGTATTAAAGCCCTGTACAATGTTGTAAATTTGATAAAAAGCGTGACAAAAC]
consensusID : consensus_6800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[CCCCGAGTTATAACGCTATGGAATGGTGCAAGGTGCGCGTAGCCGTCGACGGTGGAACGAACCGCTGGGTCGACTGGGTGAAGGGCAACATCAACAGCGAACACCTGCTCAAACCGCCCGATCTCGTGACCGGTGATTTCGACTCGTGCAACCAGGAGGCCATGGAGTACGTCGAGCAGCTGAAATGCACGATCGTTCACACGCCCGATCAAAATGCGACCGATTTCACCAAATCGCTGAAGGGTGCTGAAATTCGCACGGCTACAGACAANGCAAGCTCTTGTCGGCGCTGTGCTTGGCCCTCTGGCGCAATCGTTCCGGCCGGTCTCGACCAGATAATGGCCAAACATTCAACACAGCTCTACCCTTGGACTGGACAGGANATACTTGCCCGGCTGTGGGACCGTTGTTTCTTGCGATCCGGAAGAGCAAATTCCACTTGTCCTTGGGTCTGGAGTTGCGGGCCCGTNGGACGAAANCAAGCAAGCCCAATCGAACACANTTTCCCGGCAAGAGCNGAACTTCCCGATTGAAAGACCGAAN]
[+] EMBL AL694572 [CCCCGAGTTATAACGCTATGGAATGGTGCAAGGTGCGCGTAGCCGTCGACGGTGGAACGAACCGCTGGGTCGACTGGGTGAAGGGCAACATCAACAGCGAACACCTGCTCAAACCGCCCGATCTCGTGACCGGTGATTTCGACTCGTGCAACCAGGAGGCCATGGAGTACGTCGAGCAGCTGAAATGCACGATCGTTCACACGCCCGATCAAAATGCGACCGATTTCACCAAATCGCTGAAGGGTGCTGAAATTCGCACGGCTACAGACAANGCAAGCTCTTGTCGGCGCTGTGCTTGGCCCTCTGGCGCAATCGTTCCGGCCGGTCTCGACCAGATAATGGCCAAACATTCAACACAGCTCTACCCTTGGACTGGACAGGANATACTTGCCCGGCTGTGGGACCGTTGTTTCTTGCGATCCGGAAGAGCAAATTCCACTTGTCCTTGGGTCTGGAGTTGCGGGCCCGTNGGACGAAANCAAGCAAGCCCAATCGAACACANTTTCCCGGCAAGAGCNGAACTTCCCGATTGAAAGACCGAAN]
consensusID : consensus_6800#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence
[CCCAAAAATATTTTATAAAAGGGGGGGGGGGGGGGCAGGGGAAGTAGGGGGGGATGAATTTACCGTGTGACCTGCTGTGGAAAGCTTCAGAATAAGTGTGGCAAAGCCAGCGACTTTGTTGCATCGCTTCCTTGGATTGGAATCTAAACGTCTGCCCGGCACGTGCACGGGGATAAATGAATGCAGTAGCGTCCTTTTGACACCGTTAAACGTTCCCTGTTAAACCGAAAGGATGGTTTTAAAAGCTTGCATTTTAGTGACCCTTTGTTTGTGTCCCAAAACAACAACAACAACAAAAAGCTGATTGTATCCGCGTTGTTCGGACGACCATGTTTTAAAGCCCTGTACAAATGTTGTAAATTTGATAAAAAGCGTGACAAAACTGG]
[-] EMBL CNS09R2O [CCCAAAAATATTTTATAAAAGGGGGGGGGGGGGGGCAGGGGAAGTAGGGGGGGATGAATTTACCGTGTGACCTGCTGTGGAAAGCTTCAGAATAAGTGTGGCAAAGCCAGCGACTTTGTTGCATCGCTTCCTTGGATTGGAATCTAAACGTCTGCCCGGCACGTGCACGGGGATAAATGAATGCAGTAGCGTCCTTTTGACACCGTTAAACGTTCCCTGTTAAACCGAAAGGATGGTTTTAAAAGCTTGCATTTTAGTGACCCTTTGTTTGTGTCCCAAAACAACAACAACAACAAAAAGCTGATTGTATCCGCGTTGTTCGGACGACCATGTTTTAAAGCCCTGTACAAATGTTGTAAATTTGATAAAAAGCGTGACAAAACTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6800#0 CCGCAGGCAGGCGGGCAGCACGAGACGTTTGAACTTGTGTGGCGTGTAAATATAAACACA 60
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 AGCCCGTTCACTCCGTACCGCGCATTACACGATACGCGGTGCAGCTTGCAACTGCACGCA 120
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 AACCTGCTTGCGCTAATTTGTCCGCAACTGCTCCACACGCAGAGGTCAAAAGAACGCGAG 180
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 CCTCGGTTTATCTCCATCACCACGTGAAGTGATTGAACACGCTTTCACACAGGCTCGCCC 240
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 GCAAGCAATGCCCAACGACGATACAACATCTGATGACATGCCAAACGGCGCTGGTGCAGC 300
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 AGCGAAACGGTGGCTGCCAGCGAGCCTGATCGATGGCCACGGGCTGGACGACGGGCTCGG 360
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 GATTGTGCTGCTGAATCGACCGATCCTGCTGGAGAAACACTACTTCACAACGCTATGGAA 420
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 TGGTGCAAAGGTGCGCGTACCGTCGACGGTGGAACGAACCGCTGGGTCGACTGGGTGAAG 480
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 GGCAACATCAACAGCGAACACCTGCTCAAACCGCCCGATCTCGTGACCGGTGATTTCGAC 540
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 TCGTGCAACCAGGAGGCCATGGAGTACGTCGAGCAGCTGAAATGCACGATCGTTCACACG 600
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 CCCGATCAAAATGCGACCGATTTCACCAAATCGCTGAAGGTGCTGAAATCGCACGGCTAC 660
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 GACAAGCAGCTGTCGCGCGTGCTGGCCCTCTGCGAATCGTCCGGCCGGCTCGACCAGATA 720
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 ATGGCCAACATCAACACGCTCTACCTGGCGGACGGCATTCTGCCCGGCGTGGACGTGTTT 780
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 CTGCGATCGAGCAATTCACTATCCTGGTTGGTGCGGCCGGGCGAGCACACCATCGACATT 840
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 CCGCAGCGACTCGTGAGCGAGCGGATCTGGTGTTCGCTCGTCCCGATCGGTCAGGGCTGC 900
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 CAGTGTACGACCGACGGGCTGCGGTGGAATCTGGACGGCAGCAGGCCGCTTCAGTTCGGC 960
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 AGTATTGTAAGTACCTCCAACACGTACGCGACCAACCGGGTACGCATCACGACCGACGGG 1020
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 ------------------------------------------------------------
consensus_6800#0 CCGCTGCTGTGGTCCATGGGAACAACGCCGAAAGATAT---GTGATAGTAGGGGGGAAAA 1077
consensus_6800#2 ---------------------------CCCAAAAATAT---TTTATAAAAGGGGGGGGGG 30
consensus_6800#1 ---------------------------CCCCGAGTTATAACGCTATGGAATGGTGCAAGG 33
** * *** ** * ** *
consensus_6800#0 GGGAGAGGCGC-----GGGGAGAATGATTTTACCGTGTGACCTGCTGTGGAA-AGCTTCA 1131
consensus_6800#2 GGGGGCAGGGGAAGTAGGGGGGGATGAATTTACCGTGTGACCTGCTGTGGAA-AGCTTCA 89
consensus_6800#1 TGCGCGTAGCCGTCGACGGTGGAACGAACCGCTGGGTCGACTGGGTGAAGGGCAACATCA 93
* ** * * ** * *** * ** * * * ***
consensus_6800#0 G-AGTAATTG--TGGCAAAGC-AGCAACTATGTTGCATCGCTTCCTTGGATTGGAATCTA 1187
consensus_6800#2 G-AATAAGTG--TGGCAAAGCCAGCGACTTTGTTGCATCGCTTCCTTGGATTGGAATCTA 146
consensus_6800#1 ACAGCGAACACCTGCTCAAACCGCCCGATCTCGTG-ACCGGTGATTTCGACTCG--TGCA 150
* * ** ** * * * * ** * ** * ** ** * * * *
consensus_6800#0 AACGTCTGCCCGGCACGTGCACGGGGATAAATGAATGCAGTTGCGTCCTTTTGGCACCGT 1247
consensus_6800#2 AACGTCTGCCCGGCACGTGCACGGGGATAAATGAATGCAGTAGCGTCCTTTTGACACCGT 206
consensus_6800#1 ACCAGGAGGCCATGGAGTACGTCGAGCAGCTGAAATGCACGATCGTTCACACGCCCGATC 210
* * * ** ** * * * ****** *** * * *
consensus_6800#0 TAAACGTTCCCTGTTAAACCGAAAGGATG---GTTTTAAAAGCTTGCATT-TTAGTGACC 1303
consensus_6800#2 TAAACGTTCCCTGTTAAACCGAAAGGATG---GTTTTAAAAGCTTGCATT-TTAGTGACC 262
consensus_6800#1 AAAATGCGACCGATTTCACCAAATCGCTGAAGGGTGCTGAAATTCGCACGGCTACAGACA 270
*** * ** ** *** ** * ** * * ** * *** ** ***
consensus_6800#0 CTTTGTTTGTGTCCCAAAACAACAACAACAACAAAA-GCTGATTGTTTCCGCG------- 1355
consensus_6800#2 CTTTGTTTGTGTCCCAAAACAACAACAACAACAAAAAGCTGATTGTATCCGCGTTGTTCG 322
consensus_6800#1 ANGCAAGCTCTTGTCGGCGCTGTGCTTGGCCCTCTGGCGCAATCGTTCCGGCCGGTCTCG 330
* * * * ** ** * **
consensus_6800#0 ----GGACATGTATTAAAGCCCTGTACAA-TGT---TGTAAATTTGATAAAAAGCG-TGA 1406
consensus_6800#2 GAC-GACCATGTTTTAAAGCCCTGTACAAATGT---TGTAAATTTGATAAAAAGCG-TGA 377
consensus_6800#1 ACCAGATAATGGCCAAACATTCAACACAGCTCTACCCTTGGACTGGACAGGANATACTTG 390
* *** ** * *** * * * * * ** * * *
consensus_6800#0 CAAAAC------------------------------------------------------ 1412
consensus_6800#2 CAAAACTGG--------------------------------------------------- 386
consensus_6800#1 CCCGGCTGTGGGACCGTTGTTTCTTGCGATCCGGAAGAGCAAATTCCACTTGTCCTTGGG 450
* *
consensus_6800#0 ------------------------------------------------------------
consensus_6800#2 ------------------------------------------------------------
consensus_6800#1 TCTGGAGTTGCGGGCCCGTNGGACGAAANCAAGCAAGCCCAATCGAACACANTTTCCCGG 510
consensus_6800#0 ---------------------------------
consensus_6800#2 ---------------------------------
consensus_6800#1 CAAGAGCNGAACTTCCCGATTGAAAGACCGAAN 543
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||