cluster # 6804

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Anopheles gambiae
cluster # 6804 cluster # 6804 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6804#0 length = 781 sequences # 3

consensus_6804#1 length = 747 sequences # 2
consensus_6804#2 length = 509 sequences # 1

consensusID : consensus_6804#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 781
fasta sequence

                              [TTAACGAAACGAGAAACGGGAAGGAACAAAAACAAAAATGGCAGGTAAGAGAAAGGTAGAGCAAAAAGCGAAACCCTCCAATAACGGTCAATCACAATCGGAGTTTCGAAAAATTAACTGTGACAGCAAAGGAAAGTAAACGGAAAGCGCTTAAATTTTTAAGGATGGTAGCAGCGGTGGCGTGTGTAGAGAAACAGTGTACATTTTATACCAAAACTAATGATCATTTAATATTTTGTTTAATAACTTTTTCGCGACTAAGAGAAGGAGGGCGGCTTACTACACCGGGCGTGTAGGTTGGTTGCAAGATACTAAACGATAAATATTAATGCAAAAAAAGAAGTGAATACATCTTATATATTATATATATATACACTGAAAAGTAACATGCATACAGACGATGAAGAAAAGGAAGATGAATGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGACCAAAAGAAGTTTTGAATGTATAAAAAAAGAAACACACACGCAAGGATCGATCACACAATTGGCGCCGGATGTATGTATGTATGTATGTATGTATGTATGGGATATATATAGCTATATATTTATATACACATATTAAGAACCGAACGGATGTTAGATCATCGGTGGGGTAACCAAGAGTGTGAAGCGCGCAGTTTTGAAATGCAAAAGTGAGCAAGGAAGAGAGCGATAAAGGTGAAATAATATACATTAGTTGCTTGTGCGAATCTGAATATAGAGAAAAGTTGGAAAGGTGAAATAATAAAAGAAGCAAAACGTA]

[+] EMBL BX618269             [TTAACGAAACGAGAAACGGGAAGGAACAAAAACAAAAATGGCAGGTAAGAGAAAGGTAGAGCAAAAAGCGAAACCCTCCAATAACGGTCAATCACAATCGGAGTTTCGAAAAATTAACTGTGACAGCAAAGGAAAGTAAACGGAAAGCGCTTAAATTTTTAAGGATGGTAGCAGCGGTGGCGTGTGTAGAGAAACAGTGTACATTTTATACCAAAACTAATGATCATTTAATATTTTGTTTAATAACTTTTTCGCGACTAAGAGAAGGAGGGCGGCTTACTACACCGGGCGTGTAGGTTGGTTGCAAGATACTAAACGATAAATATTAATGCAAAAAAAGAAGTGAATACATCTTATATATTATATATATATACACTGAAAAGTAACATGCATACAGACGATGAAGAAAAGGAAGATGAATGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGACCAAAAGAAGTTTTGAATGTATAAAAAAAGAAACACACACGCAAGGATCGATCACACAATTGGCGCCGGATGTATGTATGTATGTATGTATGTATGTATGGGATATATATAGCTATATATTTATATACACATATTAAGAACCGAACGGATGTTAGATCATCGGTGGGGTAACCAAGAGTGTGAAGCGCGCAGTTTTGAAATGCAAAAGTGAGCAAGGAAGAGAGCGATAAAGGTGAAATAATATACATTAGTT                                                                ]
[+] EMBL BM603881             [                                                                                                       ccgCGAAAAATTAACTGTGACAGCAAAGGAAAGTAAACGGAAAGCGCTTAAATTTTTAAGGATGGTAGCAGCGGTGGCGTGTGTAGAGAAACAGTGTACATTTTATACCAAAACTAATGATCATTTAATATTTTGTTTAATAACTTTTTCGCGACTAAGAGAAGGAGGGCGGCTTACTACACCGGGCGTGTAGGTTGGTTGCAAGATACTAAACGATAAATATTAATGCAAAAAAAGAAGTGAATACATCTTATATATTATATATATATACACTGAAAAGTAACATGCATACAGACGATGAAGAAAAGGAAGATGAATGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGACCAAAAGAAGTTTTGAATGTATAAAAAAAGAAACACACACGCAAGGATCGATCACACAATTGGCGCCGG    ATGTATGTATGTATGTATGTATGTATGGGATATATATAGCTATATATTTATATACACATATTAAGAACCGAACGGATGTTAGATCATCGGTGGGGTAACCAAGAGTGTGAAGCGCGCAGTTTTGAAATGCAAAAGTGAGCAAGGAAGAGAGCGATAAAGGTGAAATAATATACATTAGTTGCTTGTGCGAATCTGAATATAGAGAAAAGTTGGAAAGGTGAAATAATAAAAGAAGCAAAACGTA]
[+] EMBL BX612591             [                                                                                                                                                                                                                                                                                                                                                                            ATATATATACACTGAAAAGTAACATGCATACAGACGAAGAAGAAAAGGAAGAAGAATGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGA                                                                                                                                                                                                                                                                                                                             ]




>consensus_6804#0
TTAACGAAACGAGAAACGGGAAGGAACAAAAACAAAAATGGCAGGTAAGAGAAAGGTAGA
GCAAAAAGCGAAACCCTCCAATAACGGTCAATCACAATCGGAGTTTCGAAAAATTAACTG
TGACAGCAAAGGAAAGTAAACGGAAAGCGCTTAAATTTTTAAGGATGGTAGCAGCGGTGG
CGTGTGTAGAGAAACAGTGTACATTTTATACCAAAACTAATGATCATTTAATATTTTGTT
TAATAACTTTTTCGCGACTAAGAGAAGGAGGGCGGCTTACTACACCGGGCGTGTAGGTTG
GTTGCAAGATACTAAACGATAAATATTAATGCAAAAAAAGAAGTGAATACATCTTATATA
TTATATATATATACACTGAAAAGTAACATGCATACAGACGATGAAGAAAAGGAAGATGAA
TGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGACCAAAAGAAGTTTTGA
ATGTATAAAAAAAGAAACACACACGCAAGGATCGATCACACAATTGGCGCCGGATGTATG
TATGTATGTATGTATGTATGTATGGGATATATATAGCTATATATTTATATACACATATTA
AGAACCGAACGGATGTTAGATCATCGGTGGGGTAACCAAGAGTGTGAAGCGCGCAGTTTT
GAAATGCAAAAGTGAGCAAGGAAGAGAGCGATAAAGGTGAAATAATATACATTAGTTGCT
TGTGCGAATCTGAATATAGAGAAAAGTTGGAAAGGTGAAATAATAAAAGAAGCAAAACGT
A

consensusID : consensus_6804#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 747
fasta sequence

                              [AACAAAAACAAAAATGGCAGGTAACAGAAAGGTAGAGCAAAAAGCGAAACCCTCCAATAACGGTCAATCACAATCGGAGTTTCGGAAAATTAACTGTGACAGCAAAGGCTTAAATTTTTAAGGAAGGTAGCAGCGGTGGCGTGTGTAGAGAAACAGTGTACATTTTATACCAAAACTAATGATCATTTAATATTTTGTTTAATAACTTTTTCGCGACTAAGAGAAAGAGGGCGGCTTACTACACCGGGCGTGTAGGTTGGTTGCAAGATACTAAACGATAAATATTAATGCAAAAAAAAGAAGTGAATACATCTTATATATTATATATATATACACTGAAAAGTAACATGCATACAGACGATAAAGAAAAGGAAGATGAATGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGACCAAAAGAAGTTTTGAATGTATAAAAAAAGAAACACACACGCAAGGATCGATCACACAATTGGCGCCGGATGTATGTATGTATGTATGTATGTATGTATGGGATATATATAGCTATATATTTATATACACATATTAAGAACCGAACGGATGTTAGATCATCGGTGGGGTAACCAAGAGTGTGAAGCGCGCAGTTTTGAAATGCAAAAGTGAGCAAGGAAGAGAGCGATAAAGGTGAAATAATATACATTAGTTGCTTGTGCGAATCTGAATATAGAGAAAAGTTGGAAAGGTGAAATAATAAAAGAAGCAAAACGTAATTAAA]

[+] EMBL BX625913             [AACAAAAACAAAAATGGCAGGTAACAGAAAGGTAGAGCAAAAAGCGAAACCCTCCAATAACGGTCAATCACAATCGGAGTTTCGGAAAATTAACTGTGACAGCAAAGGCTTAAATTTTTAAGGAAGGTAGCAGCGGTGGCGTGTGTAGAGAAACAGTGTACATTTTATACCAAAACTAATGATCATTTAATATTTTGTTTAATAACTTTTTCGCGACTAAGAGAAAGAGGGCGGCTTACTACACCGGGCGTGTAGGTTGGTTGCAAGATACTAAACGATAAATATTAATGCAAAAAAAAGAAGTGAATACATCTTATATATTATATATATATACACTGAAAAGTAACATGCATACAGACGATAAAGAAAAGGAAGATGAATGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGACCAAAAGAAGTTTTGAATGTATAAAAAAAGAAACACACACGCAAGGATCGATCACACAATTGGCGCCGGATGTATGTATGTATGTATGTATGTATGTATGGGATATATATAGCTATATATTTATATACACATATTAAGAACCGAACGGATGTTAGATCATCGGTGGGGTAACCAAGAGTGTGAAGCGCGCAGTTTTGAAATGCAAAAGTGAGCAAGGAAGAGAGCGATAAAGGTGAAATAATATACATTAGTTGCTTGTGCGAATCTGAATATAGAGAAAAGTTGGAAAGGTGAAATAATAAAAGAAGCAAAACGTAATTAAA]
[+] EMBL BX621356             [ ACAAAAACAAAAATGGCAGGTAACAGAAAGGTAGAGCAAAAAGCGAAACCCTCCAATAACGGTCAATCACAATCGGAGTTTCGGAAAATTAACTGTGACAGCAAAGGCTTAAATTTTTAAGGAAGGTAGCAGCGGTGGCGTGTGTAGAGAAACAGTGTACATTTTATACCAAAACTAATGATCATTTAATATTTTGTTTAATAACTTTTTCGCGACTAAGAGAAAGAGGGCGGCTTACTACACCGGGCGTGTAGGTTGGTTGCAAGATACTAAACGATAAATATTAATGCAAAAAAAAGAAGTGAATACATCTTATATATTATATATATATACACTGAAAAGTAACATGCATACAGACGATAAAGAAAAGGAAGATGAATGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGACCAAAAGAAGTTTTGAATGTATAAAAAAAGAAACACACACGCAAGGATCGATCACACAATTGGCGCCGGATGTATGTATGTATGTATGTATGTATGTATGGGATATATATAGCTATATATTTATATACACATATTAAGAACCGAACGGATGTTAGATCATCGGTGGGGTAACCAAGAGTGTGAAGCGCGCAGTTTTGAAATGCAAAAGTGAGCAAGGAAGAGAGCGATAAAGGTGAAATAATATACATTAGTTGCTTGTGCGAATCTGAATATAGAG AAAGNTGGAAAGGTGAAAT ATTAAAGAAGC AAACGTAATTAA ]




>consensus_6804#1
AACAAAAACAAAAATGGCAGGTAACAGAAAGGTAGAGCAAAAAGCGAAACCCTCCAATAA
CGGTCAATCACAATCGGAGTTTCGGAAAATTAACTGTGACAGCAAAGGCTTAAATTTTTA
AGGAAGGTAGCAGCGGTGGCGTGTGTAGAGAAACAGTGTACATTTTATACCAAAACTAAT
GATCATTTAATATTTTGTTTAATAACTTTTTCGCGACTAAGAGAAAGAGGGCGGCTTACT
ACACCGGGCGTGTAGGTTGGTTGCAAGATACTAAACGATAAATATTAATGCAAAAAAAAG
AAGTGAATACATCTTATATATTATATATATATACACTGAAAAGTAACATGCATACAGACG
ATAAAGAAAAGGAAGATGAATGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAG
TCGACCAAAAGAAGTTTTGAATGTATAAAAAAAGAAACACACACGCAAGGATCGATCACA
CAATTGGCGCCGGATGTATGTATGTATGTATGTATGTATGTATGGGATATATATAGCTAT
ATATTTATATACACATATTAAGAACCGAACGGATGTTAGATCATCGGTGGGGTAACCAAG
AGTGTGAAGCGCGCAGTTTTGAAATGCAAAAGTGAGCAAGGAAGAGAGCGATAAAGGTGA
AATAATATACATTAGTTGCTTGTGCGAATCTGAATATAGAGAAAAGTTGGAAAGGTGAAA
TAATAAAAGAAGCAAAACGTAATTAAA

consensusID : consensus_6804#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [GATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGATCAAAAGAAGTTTTGAATGTATAAAAAAAGAAACACACACACAAACGTACACAACCACACAGTTACACGTTAGAACATCGCAAATTGATACACAAATACACACACACACACACACACACACACACACACACACACACACTTGTATTAGCGGACAATCATGACAAAGAGCTCGGGTGGGAAGGGAAAAACGATCGGGAATGGGTTGCACAATGTTTGGTTGGTACGTGAAGTAAACGTGGTTGGGAGTTCTCAAACAGCCAACTTTTCAGTATTTCAGGATGCCATCCGAAGCAAGGTGTGTGTGTGTGTGTGTGTGTGTACATACCACTAATTCGTAACGTAAACATACTAATTCGACCAAAACGTTGGACCAGCGGCACGTGGAAAGCATCATTTTGAACCGTTTATCGTCGATCGTAGTGTAAAAAAGCTCCTTCTACCCACAACACCAATTTGATATAGAGAC]

[+] EMBL BX614203             [GATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGATCAAAAGAAGTTTTGAATGTATAAAAAAAGAAACACACACACAAACGTACACAACCACACAGTTACACGTTAGAACATCGCAAATTGATACACAAATACACACACACACACACACACACACACACACACACACACACACTTGTATTAGCGGACAATCATGACAAAGAGCTCGGGTGGGAAGGGAAAAACGATCGGGAATGGGTTGCACAATGTTTGGTTGGTACGTGAAGTAAACGTGGTTGGGAGTTCTCAAACAGCCAACTTTTCAGTATTTCAGGATGCCATCCGAAGCAAGGTGTGTGTGTGTGTGTGTGTGTGTACATACCACTAATTCGTAACGTAAACATACTAATTCGACCAAAACGTTGGACCAGCGGCACGTGGAAAGCATCATTTTGAACCGTTTATCGTCGATCGTAGTGTAAAAAAGCTCCTTCTACCCACAACACCAATTTGATATAGAGAC]




>consensus_6804#2
GATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGATCAAAAGAAGTTTTGAA
TGTATAAAAAAAGAAACACACACACAAACGTACACAACCACACAGTTACACGTTAGAACA
TCGCAAATTGATACACAAATACACACACACACACACACACACACACACACACACACACAC
ACTTGTATTAGCGGACAATCATGACAAAGAGCTCGGGTGGGAAGGGAAAAACGATCGGGA
ATGGGTTGCACAATGTTTGGTTGGTACGTGAAGTAAACGTGGTTGGGAGTTCTCAAACAG
CCAACTTTTCAGTATTTCAGGATGCCATCCGAAGCAAGGTGTGTGTGTGTGTGTGTGTGT
GTACATACCACTAATTCGTAACGTAAACATACTAATTCGACCAAAACGTTGGACCAGCGG
CACGTGGAAAGCATCATTTTGAACCGTTTATCGTCGATCGTAGTGTAAAAAAGCTCCTTC
TACCCACAACACCAATTTGATATAGAGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6804#0      TTAACGAAACGAGAAACGGGAAGGAACAAAAACAAAAATGGCAGGTAAGAGAAAGGTAGA 60
consensus_6804#1      ------------------------AACAAAAACAAAAATGGCAGGTAACAGAAAGGTAGA 36
consensus_6804#2      ------------------------------------------------------------
                                                                                  

consensus_6804#0      GCAAAAAGCGAAACCCTCCAATAACGGTCAATCACAATCGGAGTTTCGAAAAATTAACTG 120
consensus_6804#1      GCAAAAAGCGAAACCCTCCAATAACGGTCAATCACAATCGGAGTTTCGGAAAATTAACTG 96
consensus_6804#2      ------------------------------------------------------------
                                                                                  

consensus_6804#0      TGACAGCAAAGGAAAGTAAACGGAAAGCGCTTAAATTTTTAAGGATGGTAGCAGCGGTGG 180
consensus_6804#1      TGACAGCAAAGG-----------------CTTAAATTTTTAAGGAAGGTAGCAGCGGTGG 139
consensus_6804#2      ------------------------------------------------------------
                                                                                  

consensus_6804#0      CGTGTGTAGAGAAACAGTGTACATTTTATACCAAAACTAATGATCATTTAATATTTTGTT 240
consensus_6804#1      CGTGTGTAGAGAAACAGTGTACATTTTATACCAAAACTAATGATCATTTAATATTTTGTT 199
consensus_6804#2      --------------GATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAGTCGATCA 46
                                     *  *  *  *  * ** *      *  *  * *  *  *      

consensus_6804#0      TAATAACTTTTTCGCGACTAAGAGAAGGAGGGCGGCTTACTACACCGGGCGTGTAGGTTG 300
consensus_6804#1      TAATAACTTTTTCGCGACTAAGAGAAAGAGGGCGGCTTACTACACCGGGCGTGTAGGTTG 259
consensus_6804#2      AAAGAAGTTTTGAATGTATAAAAAAAGAAACACA-CACACAAACGTACACAACCACAC-A 104
                       ** ** ****    *  *** * **  *   *  *  ** *       *    *     

consensus_6804#0      GTTGCAAGATACTAAACGATAAATATTAATGCAAAAAAA-GAAGTGAATACATCTTATAT 359
consensus_6804#1      GTTGCAAGATACTAAACGATAAATATTAATGCAAAAAAAAGAAGTGAATACATCTTATAT 319
consensus_6804#2      GTTACACGTTA--GAACATCGCAAATTGATACACAAATA-CACACACACACA-CACACAC 160
                      *** ** * **   ***     * *** ** ** *** *  *     * *** *  * * 

consensus_6804#0      ATTATATATATATACACTGAAAAGTAACATGCATACAGACGATGAAGAAAAGGAAGATGA 419
consensus_6804#1      ATTATATATATATACACTGAAAAGTAACATGCATACAGACGATAAAGAAAAGGAAGATGA 379
consensus_6804#2      AC-ACACACACACACACACACACTTG---TATTAGCGGACAATCATGACAAAGAGCTCGG 216
                      *  * * * * * ****  * *  *    *     * *** ** * ** ** **    * 

consensus_6804#0      ATGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAG--TCGACCAAAAGAAGTTT 477
consensus_6804#1      ATGATCGACCTCTAAACACTACTGGGCACTACTAGTCGAAG--TCGACCAAAAGAAGTTT 437
consensus_6804#2      GTGGGAAGGG---AAAAACGATCGGGAATGGGTTGCACAATGTTTGGTTGGTACGTGAAG 273
                       **          *** ** *  *** *    * *   **   * *      *   *   

consensus_6804#0      TGAATGTATAAAAAAAGAAACACACACGCAAGGATCGATCACACAATTGGCGCCGGATGT 537
consensus_6804#1      TGAATGTATAAAAAAAGAAACACACACGCAAGGATCGATCACACAATTGGCGCCGGATGT 497
consensus_6804#2      TAAACGTGGTTGGGAGTTCTCAAACAGCCAACTTTTCAGTATTTCAG-GATGCCATCCGA 332
                      * ** **       *     ** ***  ***   *  *  *    *  *  ***    * 

consensus_6804#0      ATGTATGTATGTATGTATGTATGTATGGGATATATATAGCTATATATTTATATACACATA 597
consensus_6804#1      ATGTATGTATGTATGTATGTATGTATGGGATATATATAGCTATATATTTATATACACATA 557
consensus_6804#2      AGCAAGGTGTGTGTGTGTGTGTGTGTGTG-TACATACCACTAATTCGTAACGTAAACATA 391
                      *   * ** *** *** *** *** ** * ** ***   ***  *  * *  ** *****

consensus_6804#0      TTAAGAACCGAACGGA-TGTTAGATCATCGGTGGGGTAACCAAGAGTGTGAAGCGCGCAG 656
consensus_6804#1      TTAAGAACCGAACGGA-TGTTAGATCATCGGTGGGGTAACCAAGAGTGTGAAGCGCGCAG 616
consensus_6804#2      CTAAT--TCGACCAAAACGTTGGACCAGCGGCA-------------CGTGGAAAGCATCA 436
                       ***    *** *  *  *** ** ** ***                *** *  **    

consensus_6804#0      TTTTGAAATGCAAAAGTGAGCAAGGAAGAGAGCGATAAAGGTGAAATAATATACATTAGT 716
consensus_6804#1      TTTTGAAATGCAAAAGTGAGCAAGGAAGAGAGCGATAAAGGTGAAATAATATACATTAGT 676
consensus_6804#2      TTTTGAACCGT-----TTATCGTCGATCGTAGTG-------TAAAAAAGCTCCTTCTACC 484
                      *******  *      * * *   **    ** *       * *** *        **  

consensus_6804#0      TGCTTGTGCGAATCTGAATATAGAGAAAAGTTGGAAAGGTGAAATAATAAAAGAAGCAAA 776
consensus_6804#1      TGCTTGTGCGAATCTGAATATAGAGAAAAGTTGGAAAGGTGAAATAATAAAAGAAGCAAA 736
consensus_6804#2      CACA-ACACCAATTTGA-TATAGAGAC--------------------------------- 509
                        *     * *** *** ********                                  

consensus_6804#0      ACGTA------ 781
consensus_6804#1      ACGTAATTAAA 747
consensus_6804#2      -----------