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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1340 fasta sequence
[CCGGTTGTTTAGTTCGGCACCAGGGGGTTTCCGGCCCAGTTTGATTCCAATGTAGGAAGGTACTGATTGGGTTTTTAATACATTTTACGCAAAGAGCACACGAGATGAAGATGCTACTCTTCTTGTCTGTGATAACCGTTTGTTTGCATCTCTTCACAACGCAAGTGTCTGCAGAATGCTACTCCCCGTCGTTCAACTTTGCGAGTTACACCCATCCCGAGCTGCTAGATCTCACAACTCCACCGGGTAGCGTGATTGCAAGCTTCCCCGTAGAGAACGTACGATCGGCCACCGTAGTGCAACAGCCCAGCTACCTCGAAACACGCATCGTCGGAACGGACCTGCAATTTCTCACTACGGCGGCCTTCGCGCAGTACGAAGAGCGCGAGATACAAACAGTGATAATACTTCAAGTTTCCTATCAGTGCACCACCACCACAAAGAATGGACTCTATCGACACAATCTAAAGCTGGCCAACAATCATGCGCCGAGCTTTCTGCAGGATGCTTACGAAGCCGTAGTTCCGCTACCACTACCAAAAACACTTTGACGTTACGCCGTTCATTGCAAACGGAGCAGGAATAATGGCGCGGGACATTGATTTGATAAACAATGCTGTTACGTTCAGTGTGACTGAGAACGATTACATGCTTATAGAGAGCCACACCGTGCCGAATGATCCGAAGCAGTTCAAAGCAATCTTGCGGCTGAAGGAGCAGGTGTTAAAGATGCCCAACAAGCTGGAACTTACCGTCACGGCAACTGATGCTGGGGTGCCTCAAAAATCGACCCAAGTTAGTGTTGTTATCGATCCGGATCTTTCCATCGTGTACGATGATCCTCCCGTGTTTAAGGAAACGTTCATTAACACTACCATCGCAAAGGATCTACTTCTTCGGGTGGAGTTAATTCCCGGTACCGAAACGTACGATGTACAGTACAGCTTGCAAGGTACGGATGCTCAATACTTCACACAAACGGTGTGGGATAATAATACTGGGATGGATTTGAAAGTGATCGATCTAGAGCCCATTCCAAAAGCGAAACCAATACTCAATGTTGTCGCCGTTGCTAAACGTAGTCAGTTACAAGCGACATCCTGTGTGGTATTAGTCCATATTCCACCGGAGAGCGATCCGGAAGTCCCCACCACAACAGTAGACAAAGTGTTGAGTGTGTTGCATTTTGAACGAGATGTCCGAACATCAGGACATATTTCCTCTCGCGAGAGAGAGTTGCACCTACAGCATACAATCTCAAACGCCTGGTGATTATTTCTTCATAGAAGATGCAACCATACCTTCGCTATCCTCGAAAGCATTCGATCGAGAAGAGAAGG]
[+] EMBL BM604579 [CCGGTTGTTTAGTTCGGCACCAGGGGGTTTCCGGCCCAGTTTGATTCCAATGTAGGAAGGTACTGATTGGGTTTTTAATACATTTTACGCAAAGAGCACACGAGATGAAGATGCTACTCTTCTTGTCTGTGATAACCGTTTGTTTGCATCTCTTCACAACGCAAGTGTCTGCAGAATGCTACTCCCCGTCGTTCAACTTTGCGAGTTACACCCATCCCGAGCTGCTAGATCTCACAACTCCACCGGGTAGCGTGATTGCAAGCTTCCCCGTAGAGAACGTACGATCGGCCACCGTAGTGCAACAGCCCAGCTACCTCGAAACACGCATCGTCGGAACGGACCTGCAATTTCTCACTACGGCGGCCTTCGCGCAGTACGAAGAGCGCGAGATACAAACAGTGATAATACTTCAAGTTTCCTATCAGTGCACCACCACCACAAAGAATGGACTCTATCGACACAATCTAAAGCTGGCCAACAATCATGCGCCGAGCTTTCTGCAGGATGCTTACGAAGCCGTAGTTCCGCTACCACTACCAAAAACACTTTGACGTTACGCCGTTCATTGCAAACGGAGCAGGAATAATGGCGCGGGACATTGATTTGATAAACAATGCTGTTACGTTCAGTGTGACTGAGAACGATTACATGCTTATAGAGAGCCA ]
[+] EMBL BM604732 [ ccgGTTTAGTTCGGCACCAGGGGGTTTCCGGCCCAGTTTGATTCCAATGTAGGAAGGTACTGGTTTGATTTTTAATACATTTTACGCAAAGAGCACACGAGATGAAGATGCTACACTTCTTGTCTGTGATAACCGTTTGTTTGCATCTCTACGTAACGCAAGTGTCGGCAGAATGCTACTCCCCATCGTTCAACTTTGCGAGTTACACCCATCCCGAGCTGCTAGATCTCACAACTCCACCGGGAAGCGTGATTGCAAGCTTCCCCGTAGAGAACGTACGATCGGCCACCGTAGTGCAACAGCCCAGCTACCTAGAAGCACGCATCGTCGAAACGGACCTGCAATTTCTCACTACGGCGGCCTTCGCACAGTACGAAGAGCGCGAGATACAAACAGTGATAATACTTCAAGTGTCCTATC ]
[+] EMBL BM635361 [ ccgTGCAAACGGAGCAGGAATAATGGCGCGGGACATTGATTTGATAAACAATGCTGTTACGTTCAGTGTGACTGAGAACGATTACATGCTTATAGAGAGCCACACCGTGCCGAATGATCCGAAGCAGTTCAAAGCAATCTTGCGGCTGAAGGAGCAGGTGTTAAAGATGCCCAACAAGCTGGAACTTACCGTCACGGCAACTGATGCTGGGGTGCCTCAAAAATCGACCCAAGTTAGTGTTGTTATCGATCCGGATCTTTCCATCGTGTACGATGATCCTCCCGTGTTTAAGGAAACGTTCATTAACACTACCATCGCAAAGGATCTACTTCTTCGGGTGGAGTTAATTCCCGGTACCGAAACGTACGATGTACAGTACAGCTTGCAAGGTACGGATGCTCAATACTTCACACAAACGGTGTGGGATAATAATACTGGGATGGATTTGAAAGTGATCGATCTAGAGCCCATTCCAAAAGCGAAACCAATACTCAATGTTGTCGCCGTTGCTAAACGTAGTCAGTTACAAGCGACATCCTGTGTGGTATTAGTCCATATTCCACCGGAGAGCGATCCGGAAGTCCCCACCACAACAGTAGACAAAGTGTTGAGTGTGTTGCATTTTGAACGAGATGTCC ]
[+] EMBL BM603859 [ ccgCGAAGCAGTTTAAAGCAATCCTGCGGCTCAAGGAGCAGGTGTTAAAGATGCCCAACAAGCTGGAACTTACCGTCACGGCCACTGATGCTGGTGTGCCTCAAAAATCGACCCAAGTTAGTGTTGTTATCGATCCGGATCTTTCCATCGTGTACGATGATCCTCCCGTGTTTAAGGAAACGTTCATTAACACTACCATCGAAAAGGATCTACTTCTTCGGGTGGAGTTAATTCCCGGTACCGAAACGTACGATGTACAGTACAGCTTGCAAGGTACGGATGCTCAATACTTCACACAAACGGTGTGGGAGAATAATACTGGGATGGATTTGAAAGTGATCGATCTAGGGGACATCCCAAAAGCGAAACCAATACTCAATGTTGTCGCCGTTGCTAAACGTAGTCAGTTACAAGCGACATCCTGTGTGGTATTGGTCCATATTCCACCGGATAGCGATCCGGAAGTTCCCGCCACAACGGTAGACAAAGTGTTGAGTGTGTTGCA TTTGAACGAGATGTCCGAACATCAGGACATATTTCCTCTCGCGAGAGAGAGTTGCACCTACAGCATACAATCTCAAACGCCTGGTGATTATTTCTTCATAGAAGATGCAACCATACCTTCGCTATCCTCGAAAGCATTCGATCGAGAAGAGAAGG]
consensusID : consensus_6805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[GACCCACGCGTCCGCGTTCAGTGTGACTGAGAACGATTACATGCTTATAGAGAGCCACACCGTGCCGAATGATCCGAAGCAGTTCAAAGCAATCTTGCGGGTGAAGGAGCAGGTGTTAAAGATGCCCAACAAGCTGGAACTTACCGTCACGGCAACTGATGCTGGGGTGCCTCAAAAATCGACCCAAGTTAGTGTTGTTATCGATCCGGATCTTTCCATCGTGTACGATGATCCTCCCGTGTTTAAGGAAACGTTCATTAACACTACCATCGCAAAGGATCTACTTCTTCGGGTGGAGTTAATTCCCGGTACCGAAACGTACGATGTACAGTACAGCTTGCAAGGTACGGATGCTCAATACTTCACACAAACGGTGTGGGAGAATAATACTGGGATGGATTTGAAAGTGATCGATCTAGAGCCCATTCCAAAAGCGAAACCAATACTCAATGTTGTCGCCGTTGCTAAACGTAGTCAGTTACAAGCGACATCCTGTGTGGTATTAGTCCATATTCCACCGGAGAGCGATCCGGAAGTCCCCACCACAAC]
[+] EMBL BM652714 [GACCCACGCGTCCGCGTTCAGTGTGACTGAGAACGATTACATGCTTATAGAGAGCCACACCGTGCCGAATGATCCGAAGCAGTTCAAAGCAATCTTGCGGGTGAAGGAGCAGGTGTTAAAGATGCCCAACAAGCTGGAACTTACCGTCACGGCAACTGATGCTGGGGTGCCTCAAAAATCGACCCAAGTTAGTGTTGTTATCGATCCGGATCTTTCCATCGTGTACGATGATCCTCCCGTGTTTAAGGAAACGTTCATTAACACTACCATCGCAAAGGATCTACTTCTTCGGGTGGAGTTAATTCCCGGTACCGAAACGTACGATGTACAGTACAGCTTGCAAGGTACGGATGCTCAATACTTCACACAAACGGTGTGGGAGAATAATACTGGGATGGATTTGAAAGTGATCGATCTAGAGCCCATTCCAAAAGCGAAACCAATACTCAATGTTGTCGCCGTTGCTAAACGTAGTCAGTTACAAGCGACATCCTGTGTGGTATTAGTCCATATTCCACCGGAGAGCGATCCGGAAGTCCCCACCACAAC]
consensusID : consensus_6805#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[CCGTTTGATTCCAATGTAGGAAGGTACTGGTTTGATTTTTAATACATTTTACGCAAAGAGCACACGAGATGAAGATGCTACACTTCTTGTCTGTGATAACCGTTTGTTTGCATCTCTACGTAACGCAAGGTAACAACAGGTGCAGGTGGAAAAATCATGACCAATAATACCAATATCTTCTGTCCCAGTGTCGGCAGAATGCTACTCCCCATCGTTCAACTTTGCGAGTTACACCCATCCCGAGCTGCTAGATCTCACAACTCCACCGGGAAGCGTGATTGCAAGCTTCCCCGTAGAGAACGTACGATCGGCCACCGTAGTGCAACAGCCCAGCTACCTCGAAGCACGCATCGTCGAAACGGACCTGCAATTTCTCACTACGGCGGCCTTCGCACAGTACGAAG]
[+] EMBL BM649846 [CCGTTTGATTCCAATGTAGGAAGGTACTGGTTTGATTTTTAATACATTTTACGCAAAGAGCACACGAGATGAAGATGCTACACTTCTTGTCTGTGATAACCGTTTGTTTGCATCTCTACGTAACGCAAGGTAACAACAGGTGCAGGTGGAAAAATCATGACCAATAATACCAATATCTTCTGTCCCAGTGTCGGCAGAATGCTACTCCCCATCGTTCAACTTTGCGAGTTACACCCATCCCGAGCTGCTAGATCTCACAACTCCACCGGGAAGCGTGATTGCAAGCTTCCCCGTAGAGAACGTACGATCGGCCACCGTAGTGCAACAGCCCAGCTACCTCGAAGCACGCATCGTCGAAACGGACCTGCAATTTCTCACTACGGCGGCCTTCGCACAGTACGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6805#0 CCGGTTGTTTAGTTCGGCACCAGGGGGTTTCCGGCCCAGTTTGATTCCAATGTAGGAAGG 60
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 TACTGATTGGGTTTTTAATACATTTTACGCAAAGAGCACACGAGATGAAGATGCTACTCT 120
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 TCTTGTCTGTGATAACCGTTTGTTTGCATCTCTTCACAACGCAAGTGTCTGCAGAATGCT 180
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 ACTCCCCGTCGTTCAACTTTGCGAGTTACACCCATCCCGAGCTGCTAGATCTCACAACTC 240
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 CACCGGGTAGCGTGATTGCAAGCTTCCCCGTAGAGAACGTACGATCGGCCACCGTAGTGC 300
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 AACAGCCCAGCTACCTCGAAACACGCATCGTCGGAACGGACCTGCAATTTCTCACTACGG 360
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 CGGCCTTCGCGCAGTACGAAGAGCGCGAGATACAAACAGTGATAATACTTCAAGTTTCCT 420
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 ATCAGTGCACCACCACCACAAAGAATGGACTCTATCGACACAATCTAAAGCTGGCCAACA 480
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 ATCATGCGCCGAGCTTTCTGCAGGATGCTTACGAAGCCGTAGTTCCGCTACCACTACCAA 540
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 AAACACTTTGACGTTACGCCGTTCATTGCAAACGGAGCAGGAATAATGGCGCGGGACATT 600
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 GATTTGATAAACAATGCTGTTACGTTCAGTGTGACTGAGAACGATTACATGCTTATAGAG 660
consensus_6805#1 --------GACCCACGCGTCCGCGTTCAGTGTGACTGAGAACGATTACATGCTTATAGAG 52
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 AGCCACACCGTGCCGAATGATCCGAAGCAGTTCAAAGCAATCTTGCGGCTGAAGGAGCAG 720
consensus_6805#1 AGCCACACCGTGCCGAATGATCCGAAGCAGTTCAAAGCAATCTTGCGGGTGAAGGAGCAG 112
consensus_6805#2 ---------------------------CCGTTTGAT----TCCAATGTAGGAAGGTACTG 29
* *** * ** * ***** * *
consensus_6805#0 GTGTTAAAGATGCCCAACAAGCTGGAACTTACCGTCACGGCAACTGATGCTGGGGTGCCT 780
consensus_6805#1 GTGTTAAAGATGCCCAACAAGCTGGAACTTACCGTCACGGCAACTGATGCTGGGGTGCCT 172
consensus_6805#2 GTTT----GATTTTTAATACATT-----TTACGCAAAGAGCACACGAGATGAAGATGCTA 80
** * *** ** * * **** * *** ** * ***
consensus_6805#0 CAAAAATCGACCCAAGTTAGTGTTGTTATCGATCCGGATCTTTCCATCGTGTACGATGAT 840
consensus_6805#1 CAAAAATCGACCCAAGTTAGTGTTGTTATCGATCCGGATCTTTCCATCGTGTACGATGAT 232
consensus_6805#2 CACTTCTTGTCTGTGATAACCGTTT------GTTTGCATCTCTACGTAACGCAAGGTAAC 134
** * * * * * *** * * **** * * * * * * * *
consensus_6805#0 C-CTCCCGTGTTTAAGGAAACGTTCATTAACACTACCATCGCAAAGGATCTACTTCTTCG 899
consensus_6805#1 C-CTCCCGTGTTTAAGGAAACGTTCATTAACACTACCATCGCAAAGGATCTACTTCTTCG 291
consensus_6805#2 AACAGGTGCAGGTGGAAAAATCATGACCAATAATACCAATATCTTCTGTCCCAGTGTCGG 194
* * * *** * * ** * ***** ** * * *
consensus_6805#0 GGTGGAGTTAATTCCCGGTACCGAAACGTACGATGTACAGTACAGCTTGCAAGGTACGGA 959
consensus_6805#1 GGTGGAGTTAATTCCCGGTACCGAAACGTACGATGTACAGTACAGCTTGCAAGGTACGGA 351
consensus_6805#2 CAGAATGCTACTCCCCATCGTTCAACTTTGCGAGTTACA---CCCATCCCGAGCTGCTAG 251
* ** * *** ** * *** **** * * * ** * *
consensus_6805#0 TGCTCAATACTTCACACAAACGGTGTGGGATAATAATACTGGGATGGATTTGAAAGTGAT 1019
consensus_6805#1 TGCTCAATACTTCACACAAACGGTGTGGGAGAATAATACTGGGATGGATTTGAAAGTGAT 411
consensus_6805#2 ATCTCACAACTCCAC-CGGGAAGCGTGATTGCAAGCTTCCCCGTAGAGAACGTA--CGAT 308
**** *** *** * * *** * * * * * * * ***
consensus_6805#0 CGATCTAGAGCCCATTCCAAAAGCGAAACCAATACTCAATGTTGTCGCCGTTGCTAAACG 1079
consensus_6805#1 CGATCTAGAGCCCATTCCAAAAGCGAAACCAATACTCAATGTTGTCGCCGTTGCTAAACG 471
consensus_6805#2 CGGCC---ACCGTAGTGCAACAGCCCAGCTAC--CTCGAAGCACGCATCGTCGAAACGGA 363
** * * * * * *** *** * * * *** * * * *** * *
consensus_6805#0 TAGTCAGTTACAAGCGACATCCTGTGTGGTATTAGTCCATATTCCACCGGAGAGCGATCC 1139
consensus_6805#1 TAGTCAGTTACAAGCGACATCCTGTGTGGTATTAGTCCATATTCCACCGGAGAGCGATCC 531
consensus_6805#2 CCTGCAATTTCTCACTACGGCGGCCTTCGCAC-AGTACGAAG------------------ 404
** ** * * ** * * * * *** * *
consensus_6805#0 GGAAGTCCCCACCACAACAGTAGACAAAGTGTTGAGTGTGTTGCATTTTGAACGAGATGT 1199
consensus_6805#1 GGAAGTCCCCACCACAAC------------------------------------------ 549
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 CCGAACATCAGGACATATTTCCTCTCGCGAGAGAGAGTTGCACCTACAGCATACAATCTC 1259
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 AAACGCCTGGTGATTATTTCTTCATAGAAGATGCAACCATACCTTCGCTATCCTCGAAAG 1319
consensus_6805#1 ------------------------------------------------------------
consensus_6805#2 ------------------------------------------------------------
consensus_6805#0 CATTCGATCGAGAAGAGAAGG 1340
consensus_6805#1 ---------------------
consensus_6805#2 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||