These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1134 fasta sequence [CCGCCAAGACCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAACAGCAGCAGCAGCAGCAG---CAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCGGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAAGAAGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTTCCGGAGGTGTGGGCCGCACCGGGCGAGCTGATCGGCTGCATCCAGCAGGACTACGGCGTACTGTCACAGGAGATCGTGCTGCTGAACAGTGACATTAACACGATGTTCCGCATACCGATACCGTTCCTGAACGCGCTGCGCATGCCGAAGGAGACACACTTTCGCGTGCTGGACCGGGACCGGATGACGCAGAAGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACTACTCCGACCCGACGATGGACGTCAAGTTTAAGTCGCTGTTCATAGCGGCCGCCTTCATGCTGGAATATCTTTACTTTCAATCGAATTGTTGTTAAGAGGACGTGTGTTGTGGACCCCCATCACCACTGATGAAGTGAGAGACAGGAAAAGCAATTTCATACTGAATTGAGCAGAGCAGTACATATTTATAAAGTACACATTCTTTCGTTTGATAAGAAAAGAAACATTAAAAAATGGCATGATGT] [+] EMBL BM609297 [CCGCCAAGACCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAA CAGCAGCAGCAGCAG CAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAACATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACTGGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGGGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAAGAAGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTTCC ] [+] EMBL CNS08GAF [ tttccatatCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAACAGCAGCAGCAGCAGCAGCACCAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCGCTA CAGCTCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCGGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGTGCCGGG ] [+] EMBL BX621837 [ TACGTTCACTCTACGCCGGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAACAGCAGCAGCAGCAGCAG CAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTC ] [+] EMBL BX628287 [ GCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGAAGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTCCTGGAGGTGTGGGCCGCACCGGGCGAGCTGATCGGCTGCATCCAGCAGGACTACGGCGTACTGTCACAGGAGATCGTGCTGCTGAACAGTGACATTAACACGATGTTCCGCATACCGATACCGTTCCTGAACGCGCTGCGCATGCCGAAGGAGACACACTTTCGCGTGCTGGACCGGGACCGGATGACGCAGAAGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACTACTCCGACCCGACGATG ] [-] EMBL CNS08GAG [ CGTGCTGGACCGGGATCGGATGACGCAGAAGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACTACTCCGACCCGACGATGGACGTCAAGTTTAAGTCGCTGTTCATAGCGGCCGCCTTCATGCTGGAATATCTTTACTTTCAATCGAATTGTTGTTAAGAGGACGTGTGTTGTGGACCCCCATCACCACTGATGAAGTGAGAGACAGGAAAAGCAATTTCATACTGAATTGAGCAGAGCAGTACATATTTATAAAGTACACATTCTTTCGTTTGATAAGAAAAGAAACATTAAAAAATGGCATGATGT] consensusID : consensus_6809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATGTAAGACCGTTGAACAGCCGTTTTGAACAATCGCTCATAATCCTACTTCGGACGCGTACCCCATTTTGCAGTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGAAG] [+] EMBL BM617692 [CCGCGGACGCGTGGGCGGACGCGTGGGTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATGTAAGACCGTTGAACAGCCGTTTTGAACAATCGCTCATAATCCTACTTCGGACGCGTACCCCATTTTGCAGTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6809#0 CCGCCAAGACCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGA 60 consensus_6809#1 ------------------------------------------------------------ consensus_6809#0 GTTCCACCACAACAGCAGCAGCAGCAGCAGCAGCAGCAGGCGCCGGAGTTTTACGGTCCA 120 consensus_6809#1 ---------------------CCGCGGACGCGTGGGCGGACGC-GTGGGTTTACGGTCCA 38 * ** * ** ** * *** * * *********** consensus_6809#0 GACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCA 180 consensus_6809#1 GACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCA 98 ************************************************************ consensus_6809#0 CCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCA 240 consensus_6809#1 CCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCA 158 ************************************************************ consensus_6809#0 CAATCGCAGCAGCATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCGGGG 300 consensus_6809#1 CAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGG 218 ************* ****************************************** *** consensus_6809#0 GACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGTGCCGGGCTC 360 consensus_6809#1 GACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTC 278 ******************************************** *************** consensus_6809#0 GACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAAT-- 418 consensus_6809#1 GACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATGT 338 ********************************************************** consensus_6809#0 ------------------------------------------------------------ consensus_6809#1 AAGACCGTTGAACAGCCGTTTTGAACAATCGCTCATAATCCTACTTCGGACGCGTACCCC 398 consensus_6809#0 ---------TACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAA 469 consensus_6809#1 ATTTTGCAGTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAA 458 *************************************************** consensus_6809#0 ACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGC 529 consensus_6809#1 ACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGC 518 ************************************************************ consensus_6809#0 TACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAAGA 589 consensus_6809#1 TACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGA 578 ********************************************************* ** consensus_6809#0 AGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTTCCGGAGGTGTGGG 649 consensus_6809#1 AG---------------------------------------------------------- 580 ** consensus_6809#0 CCGCACCGGGCGAGCTGATCGGCTGCATCCAGCAGGACTACGGCGTACTGTCACAGGAGA 709 consensus_6809#1 ------------------------------------------------------------ consensus_6809#0 TCGTGCTGCTGAACAGTGACATTAACACGATGTTCCGCATACCGATACCGTTCCTGAACG 769 consensus_6809#1 ------------------------------------------------------------ consensus_6809#0 CGCTGCGCATGCCGAAGGAGACACACTTTCGCGTGCTGGACCGGGACCGGATGACGCAGA 829 consensus_6809#1 ------------------------------------------------------------ consensus_6809#0 AGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACT 889 consensus_6809#1 ------------------------------------------------------------ consensus_6809#0 ACTCCGACCCGACGATGGACGTCAAGTTTAAGTCGCTGTTCATAGCGGCCGCCTTCATGC 949 consensus_6809#1 ------------------------------------------------------------ consensus_6809#0 TGGAATATCTTTACTTTCAATCGAATTGTTGTTAAGAGGACGTGTGTTGTGGACCCCCAT 1009 consensus_6809#1 ------------------------------------------------------------ consensus_6809#0 CACCACTGATGAAGTGAGAGACAGGAAAAGCAATTTCATACTGAATTGAGCAGAGCAGTA 1069 consensus_6809#1 ------------------------------------------------------------ consensus_6809#0 CATATTTATAAAGTACACATTCTTTCGTTTGATAAGAAAAGAAACATTAAAAAATGGCAT 1129 consensus_6809#1 ------------------------------------------------------------ consensus_6809#0 GATGT 1134 consensus_6809#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||