These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CCGCAGCGGCGTACGTGACGTACATCAACAACAACGACGCGCTGAGGGCGATCCAAAGCGTTAACAACATCATGATCGATGGTCGACTGATAAAGACGAGCTTAGGTACGACGAAGTACTGTAGCCACTTTATGAAAAACCAAACCTGTCCCAAGCCGGACTGCATGTACTTGCACGAGCTCGGCGACCAGGAGGCTAGCTTTACGAAGGAGGAGATGCACCAAGGGAAGCATCAAGAGTACGAGAAGCGGCTGCACGATGCCATGCAGGCGCAGTTAGGTCTGACGTCTGCAGCAGGAGGGCATGGCAGCAACGGCAGTGGTAGTGCGGCGGCAACGGCAGCGACGGCGGCGTCCTCTGGCGGTGGTACGGCCACCGCGGCCCCGACCGCCGGCCTGGTGTCGTCGACGGCGGCGGCAGTGGTGGCGGCGTCGGCGACGACGGCAGCGGCGGCTGTTGCGGCGGGAACAACTGCAGTTAATGGGAATAGCGCCGGCAACAAGGAAAACTCGAACCGAAGCGACCGAAAGCACGAAACGAAATCTCGCTCGAAAGGAGGCAAAAACAAGCAGCAGCAGCAGCAACAGCAGCAACAACACAACAACAAAAATAGTCACGACAATTCCAGTAATCATAAAGATAGTACAAGCAACGTGACTAGTGCCAACGGTGTTGTTGCTGCTGCGAA] [+] EMBL BM587319 [CCGCAGCGGCGTACGTGACGTACATCAACAACAACGACGCGCTGAGGGCGATCCAAAGCGTTAACAACATCATGATCGATGGTCGACTGATAAAGACGAGCTTAGGTACGACGAAGTACTGTAGCCACTTTATGAAAAACCAAACCTGTCCCAAGCCGGACTGCATGTACTTGCACGAGCTCGGCGACCAGGAGGCTAGCTTTACGAAGGAGGAGATGCACCAAGGGAAGCATCAAGAGTACGAGAAGCGGCTGCACGATGCCATGCAGGCGCAGTTAGGTCTGACGTCTGCAGCAGGAGGGCATGGCAGCAACGGCAGTGGTAGTGCGGCGGCAACGGCAGCGACGGCGGCGTCCTCTGGCGGTGGTACGGCCACCGCGGCCCCGACCGCCGGCCTGGTGTCGTCGACGGCGGCGGCAGTGGTGGCGGCGTCGGCGACGACGGCAGCGGCGGCTGTTGCGGCGGGAACAACTGCAGTTAATGGGAATAGCGCCGGCAACAAGGAAAACTCGAACCGAAGCGACCGAAAGCACGAAACGAAATCTCGCTCGAAAGGAGGCAAAAACAAGCAGCAGCAGCAGCAACAGCAGCAACAACACAACAACAAAAATAGTCACGACAATTCCAGTAATCATAAAGATAGTACAAGCAACGTGACTAGTGCCAACGGTGTTGTTGCTGCTGCGAA] consensusID : consensus_681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAAGCACGAAACGAAATCTCGCTCGAAAGGAGGCAAAAACAAGCAGCAGCAGCAGCAACAGCAGCAACAACACAACAACAAAAATAGTCACGACAATTCCAGTAATCATAAAGATAGTACAAGCAACGTGACTAGTGCCAACGGTGTTGTTGCTGCTGCGAAGGGTGGCAGTGCGGCGTTGGTAAACGGCAAAGGAAGCAAGGCTTCGAACGGAAAGCAGCAGCAGCGGAACGGTGCTAGCAACGCCCCAGAAGCTCACGAGCATGCGATTGTGAACGGTAACAGCAAGGAGGCACAGAACAATAGCAAAAACCTGAAGCAGCAGCAGCGCGAACGCGAACGGGAACAGCGGGAGCAGCAATCCCTGCTCAAGGGAAGCAGTGATAGCGGCGAGCAGCAGCAACAGCAGCAGCAGAAACAGCAGCAACCACCACAGAGCAAAAAGCGAGAAGCTAACGGCACCAGCAATGGCCCCACGGCGACCAGCATTAGCAATGGGAACGCAAATGGAAACGGCCATATTATCAATAATGATCTGGACGATGACGATGACGAGCTGGACTTTGAGGATCTGGACAATGACGCACTGTCGTCGGACAATGATGGCAAAACGGATTCGCCTTCGTTAAGTAGTTCGGCTTCCTCCCGGAAC] [+] EMBL BM575209 [CCGCCCACGCGTCCGCCCACGCGTCCGAAAGCACGAAACGAAATCTCGCTCGAAAGGAGGCAAAAACAAGCAGCAGCAGCAGCAACAGCAGCAACAACACAACAACAAAAATAGTCACGACAATTCCAGTAATCATAAAGATAGTACAAGCAACGTGACTAGTGCCAACGGTGTTGTTGCTGCTGCGAAGGGTGGCAGTGCGGCGTTGGTAAACGGCAAAGGAAGCAAGGCTTCGAACGGAAAGCAGCAGCAGCGGAACGGTGCTAGCAACGCCCCAGAAGCTCACGAGCATGCGATTGTGAACGGTAACAGCAAGGAGGCACAGAACAATAGCAAAAACCTGAAGCAGCAGCAGCGCGAACGCGAACGGGAACAGCGGGAGCAGCAATCCCTGCTCAAGGGAAGCAGTGATAGCGGCGAGCAGCAGCAACAGCAGCAGCAGAAACAGCAGCAACCACCACAGAGCAAAAAGCGAGAAGCTAACGGCACCAGCAATGGCCCCACGGCGACCAGCATTAGCAATGGGAACGCAAATGGAAACGGCCATATTATCAATAATGATCTGGACGATGACGATGACGAGCTGGACTTTGAGGATCTGGACAATGACGCACTGTCGTCGGACAATGATGGCAAAACGGATTCGCCTTCGTTAAGTAGTTCGGCTTCCTCCCGGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_681#0 ------CCGCAGCGGCGTACGTGACGTACATCA-ACAACAACGACGCGCT--GAGGGCGA 51 consensus_681#1 CCGCCCACGCGTCCGCCCACGCGTCCGAAAGCACGAAACGAAATCTCGCTCGAAAGGAGG 60 *** * ** *** * * * * ** *** * * **** * ** * consensus_681#0 TCCAAAGCGTTAACAACATCATGATCGATGGTCGACTGATAAAGACGAGCTTAGGTACGA 111 consensus_681#1 CAAAAACAAGCAGCAGCAGCAGCAACAGCAGCAACAACACAACAACAAAAATAGTCACGA 120 *** * ** ** ** * * * * ** ** * *** **** consensus_681#0 CGAAGTACTGTAGCCACTTTATGAAAAACCAAACCTGTCCCAAGCCGGACTGCATGTACT 171 consensus_681#1 C-AATTCCAGTAATCA--TAAAGATAGTACAAGC--AACGTGACTAGTGCCAACGGTGTT 175 * ** * * *** ** * * ** * *** * * * * * ** * consensus_681#0 TGCACGAGCTCGGCGACCAGGAGGCTAGCTTTACGAAGGAGGAGATGCACCAAGGGAAGC 231 consensus_681#1 GTTGCTGCTGCGAAGGGTGGCAGTGCGGCGTTGGTAAACGGCAAAGG----AAGCAAGGC 231 * ** * * ** ** ** ** * * * * *** * ** consensus_681#0 ATCAAGAGTACGAGAAGCGGCTGCACGATGCCATGCAGGCGCAGTTAGGTCTGACGTCTG 291 consensus_681#1 TTCGA----ACGGAAAGCAGCAGCA----GCGGAACGGTGCTAGCAACGCCCCA-----G 278 ** * *** **** ** *** ** * * ** * * * * * consensus_681#0 CAGCAGGAGGGCATGGCAGCAACGGCAGTGGTAGTGCGGCGGCAACGGCAGCGACGGCGG 351 consensus_681#1 AAGCTCACGAGCATGCGATTGTGAACGGTAACAGCAAGGAGGCACAG--AACAATAGCAA 336 *** * ***** * * ** ** ** **** * * * * ** consensus_681#0 CGTCCTCTGGCGGTGGTACGGCCACCGCGGCCCCGACCGCCGGC--CTGGTGTCGTCGA- 408 consensus_681#1 AAACCTGAAGCAGCAGCAGCGCGAACGCGAACGGGAACAGCGGGAGCAGCAATCCCTGCT 396 *** ** * * * ** * **** * ** * *** * * ** * consensus_681#0 CGGCGGCGGCAGTGGTGGCGGCGTCGGCGACGACGGCAGCGGCGGCTGTTGCGGCGGGAA 468 consensus_681#1 CAAGGGAAGCAGTGATAGCGGCG--AGCAGCAGCAACAGCAGCAGCAGAAACAGCAGCAA 454 * ** ****** * ****** ** * * **** ** ** * * ** * ** consensus_681#0 CAACTGCAGT-TAATGGGAATAGCGCCGGCAACAAGGAAAACTCGAACCGAAGCGACCGA 527 consensus_681#1 CCACCACAGAGCAAAAAGCGAGAAGCTAACGGCACCAGCAA-TGGCCCCACGGCGACCAG 513 * ** *** ** * ** * ** ** * * ** ****** consensus_681#0 AAGCACGAAACGAAATCTCGCTCGAAAGGAGGCAAAAACAAGCAGCAGCAGCAGCAACAG 587 consensus_681#1 CATTAGCAATGGGAACGCAAATGGAAACGGCCATATTATCAATAATGATCTGGACGATGA 573 * * ** * ** * **** * * * * * * * consensus_681#0 CAGCAACAA-CACAACAACAAAAATAGTCACGACAATTC-CAGTAATC--ATAAAGATAG 643 consensus_681#1 CGATGACGAGCTGGACTTTGAGGATCTGGACAATGACGCACTGTCGTCGGACAATGATGG 633 * ** * * ** * ** ** * * * * ** ** * ** *** * consensus_681#0 TACAAGCAACGTGACTAGTGCCAACGGTGTTGTTGCTGCTGCGAA- 688 consensus_681#1 CAAAACGGATTCGCCTTCGTTAAGTAGTTCGGCTTCCTCCCGGAAC 679 * ** * * ** * ** * * * * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||