cluster # 682

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 682 cluster # 682 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_682#0 length = 655 sequences # 1

consensus_682#1 length = 575 sequences # 1

consensusID : consensus_682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCGCGGAACTACCTGTACATAGCAGATCGAATATCAAATTACGATATACACAAAATGGCGTGTTGTCGTCATCTGTAATGAGAAAATCCTATGGAAAAATTCAGCTGCATGACCGAGCTGATCGACCGACTGCTGCAGAACTACGTTCAATGGCAATGCGTCAACAACATCAGATTGATACTCAGCACCAGATGCTTGCGGCAAAGGAACAACGTTTACGTTTCCTTAAATCACAGGAAACACGTAATGCTGTTTCGGTTGCTGAAGCTGAGCGTCTTCGTCGATTGCGCGAGCGTGTTGAAGCCCAGGAATCAAAATTGCGACGCCTCAGGGCTTTGAGGGGACAAGTAGATTTACAAAAAACCTATAACGTTACGCTGGGTAATGACCTTGACTCGATACGAGCGCTATTCAGTGAGAAGGAAAAGGAGCTTACTCTTGCAGTAGCTAAAGTTGAAGCGTTAACACGCCAGCTTGAAGAGCTACGACGTGATCGACGAGGTGTCGGTAATGGTACAAATGGCATTTCATACAGTCTTAATTCAAATCCCCACAACAATAATGCTACACCAGCGGCGAAAGAGTTGGAAAAATTGCGCTTGGAACTTGCTTATCGTAATCAATTATCCATGCAACAGAATGCCCGCTTAAATAT]

[+] EMBL BM589797             [CCGCGGAACTACCTGTACATAGCAGATCGAATATCAAATTACGATATACACAAAATGGCGTGTTGTCGTCATCTGTAATGAGAAAATCCTATGGAAAAATTCAGCTGCATGACCGAGCTGATCGACCGACTGCTGCAGAACTACGTTCAATGGCAATGCGTCAACAACATCAGATTGATACTCAGCACCAGATGCTTGCGGCAAAGGAACAACGTTTACGTTTCCTTAAATCACAGGAAACACGTAATGCTGTTTCGGTTGCTGAAGCTGAGCGTCTTCGTCGATTGCGCGAGCGTGTTGAAGCCCAGGAATCAAAATTGCGACGCCTCAGGGCTTTGAGGGGACAAGTAGATTTACAAAAAACCTATAACGTTACGCTGGGTAATGACCTTGACTCGATACGAGCGCTATTCAGTGAGAAGGAAAAGGAGCTTACTCTTGCAGTAGCTAAAGTTGAAGCGTTAACACGCCAGCTTGAAGAGCTACGACGTGATCGACGAGGTGTCGGTAATGGTACAAATGGCATTTCATACAGTCTTAATTCAAATCCCCACAACAATAATGCTACACCAGCGGCGAAAGAGTTGGAAAAATTGCGCTTGGAACTTGCTTATCGTAATCAATTATCCATGCAACAGAATGCCCGCTTAAATAT]




>consensus_682#0
CCGCGGAACTACCTGTACATAGCAGATCGAATATCAAATTACGATATACACAAAATGGCG
TGTTGTCGTCATCTGTAATGAGAAAATCCTATGGAAAAATTCAGCTGCATGACCGAGCTG
ATCGACCGACTGCTGCAGAACTACGTTCAATGGCAATGCGTCAACAACATCAGATTGATA
CTCAGCACCAGATGCTTGCGGCAAAGGAACAACGTTTACGTTTCCTTAAATCACAGGAAA
CACGTAATGCTGTTTCGGTTGCTGAAGCTGAGCGTCTTCGTCGATTGCGCGAGCGTGTTG
AAGCCCAGGAATCAAAATTGCGACGCCTCAGGGCTTTGAGGGGACAAGTAGATTTACAAA
AAACCTATAACGTTACGCTGGGTAATGACCTTGACTCGATACGAGCGCTATTCAGTGAGA
AGGAAAAGGAGCTTACTCTTGCAGTAGCTAAAGTTGAAGCGTTAACACGCCAGCTTGAAG
AGCTACGACGTGATCGACGAGGTGTCGGTAATGGTACAAATGGCATTTCATACAGTCTTA
ATTCAAATCCCCACAACAATAATGCTACACCAGCGGCGAAAGAGTTGGAAAAATTGCGCT
TGGAACTTGCTTATCGTAATCAATTATCCATGCAACAGAATGCCCGCTTAAATAT

consensusID : consensus_682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [CCGCAACTTACGATATACACAAAATGGCGTGTTGTCGTCATCTGTAATGAGAAAATCCTATGGAAAAGTAATTAGAGAAAATACAGTTAACTTATTTGTGTGAAAATCTAATAATATAAATACTTGTAGAGTTTATGTTCGAAATCAATATTATCGATGTTTCGGGCATTCCAGTAGTGAAAATGGTGGTGTTTGTGAATGTACACGTCTAGAGCATTTCTTCAATATTGAAATATTTGGTAGTTTATAACAGGTTGAAGCATATCTGGATTCCACCAACATGTTGTGAAAAACTATTGTGCTGTTACGCGTGGAAATACGTGACCATTTATAATAGTCTTTTGTAAAACAGTGAAGTTGTACATTACTAGATAGCTTCATTATTCTTTACTAGCATAAAATTGTCTTGTGAAGTGAGCATTTCGTGTGTTTTATTACAATCGAATACGAACGAGTTTCAATTGGTTTTATTACATGTAATTCAACACTAATCTTATTCTGAATTTTGTTAAATGTATATCATGGAATGAAGCAACCGAGTTATAGTGAAGATAATATTCAGCTGCATGACCGAG]

[+] EMBL BM643524             [CCGCAACTTACGATATACACAAAATGGCGTGTTGTCGTCATCTGTAATGAGAAAATCCTATGGAAAAGTAATTAGAGAAAATACAGTTAACTTATTTGTGTGAAAATCTAATAATATAAATACTTGTAGAGTTTATGTTCGAAATCAATATTATCGATGTTTCGGGCATTCCAGTAGTGAAAATGGTGGTGTTTGTGAATGTACACGTCTAGAGCATTTCTTCAATATTGAAATATTTGGTAGTTTATAACAGGTTGAAGCATATCTGGATTCCACCAACATGTTGTGAAAAACTATTGTGCTGTTACGCGTGGAAATACGTGACCATTTATAATAGTCTTTTGTAAAACAGTGAAGTTGTACATTACTAGATAGCTTCATTATTCTTTACTAGCATAAAATTGTCTTGTGAAGTGAGCATTTCGTGTGTTTTATTACAATCGAATACGAACGAGTTTCAATTGGTTTTATTACATGTAATTCAACACTAATCTTATTCTGAATTTTGTTAAATGTATATCATGGAATGAAGCAACCGAGTTATAGTGAAGATAATATTCAGCTGCATGACCGAG]




>consensus_682#1
CCGCAACTTACGATATACACAAAATGGCGTGTTGTCGTCATCTGTAATGAGAAAATCCTA
TGGAAAAGTAATTAGAGAAAATACAGTTAACTTATTTGTGTGAAAATCTAATAATATAAA
TACTTGTAGAGTTTATGTTCGAAATCAATATTATCGATGTTTCGGGCATTCCAGTAGTGA
AAATGGTGGTGTTTGTGAATGTACACGTCTAGAGCATTTCTTCAATATTGAAATATTTGG
TAGTTTATAACAGGTTGAAGCATATCTGGATTCCACCAACATGTTGTGAAAAACTATTGT
GCTGTTACGCGTGGAAATACGTGACCATTTATAATAGTCTTTTGTAAAACAGTGAAGTTG
TACATTACTAGATAGCTTCATTATTCTTTACTAGCATAAAATTGTCTTGTGAAGTGAGCA
TTTCGTGTGTTTTATTACAATCGAATACGAACGAGTTTCAATTGGTTTTATTACATGTAA
TTCAACACTAATCTTATTCTGAATTTTGTTAAATGTATATCATGGAATGAAGCAACCGAG
TTATAGTGAAGATAATATTCAGCTGCATGACCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_682#0      CCGCGGAACTACCTGTACATAGCAGATCGAATATCAAATTACGATATACACAAAATGGCG 60
consensus_682#1      -------------------------------CCGCAACTTACGATATACACAAAATGGCG 29
                                                       *** **********************

consensus_682#0      TGTTGTCGTCATCTGTAATGAGAAAATCCTATGGAAAAATTCAGCTGCATGACCGAGCTG 120
consensus_682#1      TGTTGTCGTCATCTGTAATGAGAAAATCCTATGGAAAAGT--AATTAGAGAA--AATACA 85
                     ************************************** *  *  *  *  *   *    

consensus_682#0      ATCGACCGACTGCTGCAGAACTACGTTCAATGGCAATGCGTCAACAACATCAGATTGATA 180
consensus_682#1      GTTAACTTATTTGTGTGAAAATCTAAT-AATATAAATACTT-------GTAGAGTTTATG 137
                      *  **  * *  **   ** *    * ***   *** * *        *    ** ** 

consensus_682#0      CTCAGCACCAGATGCTTGCGGCAAAGGAACAACGTTTACGTTTCCTTAAATCACAGGAAA 240
consensus_682#1      TTCGAAATCA-ATATT-----------ATCGATGTTT-CGGGCATTCCAGTAGTGAAAA- 183
                      **   * ** **  *           * * * **** **     *  * *      ** 

consensus_682#0      CACGTAATGCTGTTT-CGGTTGCTGAAGCTGAGCGTCTTCGTCGATTGCGCGAGCGTGTT 299
consensus_682#1      ----TGGTGGTGTTTGTGAATGTACACGTCTAGAGCATTTCTTCAATATTGAAATATTTG 239
                         *  ** *****  *  **   * *   ** *  **  *  * *     *   * * 

consensus_682#0      GAAGCCCAGGAATCAAAATTGCGACGCCTCAGGGCTTTGAGGGGACAAGTAGATTTACAA 359
consensus_682#1      GTAGTTTATAAC---AGGTTGAAGCATATCTGGATTCC-----ACCAACATGTTGTGAAA 291
                     * **   *  *    *  ***   *   ** **  *         ***   * * *  **

consensus_682#0      AAAACCTATAACGTTACGCTGGGTAATGACCTTGACTCGATACGAGCGCTATTCAGTGAG 419
consensus_682#1      AACTATTGTGCTGTTACGCGTGGAAATA--CGTGACCATTTATAATAGTC-TTTTGTAAA 348
                     **    * *   *******  ** ***   * ****    **  *  *   **  ** * 

consensus_682#0      AAGGAAAAGGAGCTTACTCTTGCAGTAGCTAAAGT-TGAAGCGTTAACACG---CCAGCT 475
consensus_682#1      ACAGTGAAGTTGTACATTACTA-GATAGCTTCATTATTCTTTACTAGCATAAAATTGTCT 407
                     *  *  ***  *   * *  *    *****  * * *       ** **         **

consensus_682#0      TGAAGAGCTACGACGTGATCGACGAGGTGTCGGTAATGGTACAAATGGCATTTCATACAG 535
consensus_682#1      TGTGAAGTGAGCATTTCGTGTGTTTTATTACAATCG-AATACGAACGA-GTTTCAATTGG 465
                     **   **  *  *  *  *        *  *  *     *** ** *   *****    *

consensus_682#0      TCTTAATTCAAATCCCCACAACAATAATGCTACACCAGCGGCGAAAGAGTTGGAAAAATT 595
consensus_682#1      TTTTATTACATGTAATT-CAACACTAATCTTATTCTGAATTTTGTTAAATGTATATCATG 524
                     * *** * **  *     ***** ****  **  *            * *    *  ** 

consensus_682#0      GCGCTTGGAACTTGCTTATCGTAATCAATTATCCATGCAACAGAATGCCCGCTTAAATAT 655
consensus_682#1      GAA--TGAAGCAACCGAGTTATAGTGAAGATAATATTCAGCTGCATGACCGAG------- 575
                     *    ** * *   *   *  ** * **      ** ** * * *** ***