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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1074 fasta sequence
[TCGGTGCGACGGCCGCCATGTCGACTGCGATGGGCGTCACGCTGACGGCTGCCATCGGTGGCGCCGACATGCCGGTCGTCATCACGGTGCTGAACTCGTACTCCGGCTGGGCGCTGTGCGCGGAAGGGTTCATGCTGAACAACAACCTGATGACGATCGTGGGCGCCCTGATCGGTTCGTCCGGTGCCATCCTGTCCTACATCATGTGCAAAGCGATGAACCGGTCGCTGCCGAACGTGATCCTGGGCGGGTACGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCG-GGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGG-AGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCG-AGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCAGATCAGGTGGTTGTGATGAAGCGTTCGCTTGGCGTCGG-TTACGCGGCAGTGGACAACCCGATC-TTCTACAAACCGAACACCTCGATGTTGCTCGG-TG-ACGCG-AAG-AAG-ACGTGCGACGCCCTGCTGGGCAA-GATTAAGGAAGACAACTGAGGGCAGAGTGACGAAATTATTGGGAAAGGGGGA-TT-TGGGTACTTTACTTCACTA-AGCGCCGTTTGCCGCACCGAGGCAGCANNCAGCAGCTAGGCCACCAANNNCACTTTAACTCTAACGCTGCACCTGGTAACTGTAACGAAAAANACCGCTGCGATAACCAACCGNTGGCCACTACNACTGCTCANCCAACTTCTATGGCTCTTACTGGTAACTGTGTACACAATAACAGCCGTNCAAG]
[+] EMBL BX614747 [TCGGTGCGACGGCCGCCATGTCGACTGCGATGGGCGTCACGCTGACGGCTGCCATCGGTGGCGCCGACATGCCGGTCGTCATCACGGTGCTGAACTCGTACTCCGGCTGGGCGCTGTGCGCGGAAGGGTTCATGCTGAACAACAACCTGATGACGATCGTGGGCGCCCTGATCGTTTCGTCCGGTGCCATCCTGTCCTACATCATGTGCAAAGCGATGAACCGGTCGCTGCCGAACGTGATCCTGGGCGGGTACGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCG GGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGG AGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCG AGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCAGATCAGGTGGTTGTGATGAAGCG ]
[+] EMBL BX607104 [ GAACTCGTACTCCGGCTGGGCGCTGTGCGCGGAAGGGTTCATGCTGAACAACAACCTGATGACGATCGTGGGCGCCCTGATCGGTTCGTCCGGTGCCATCCTGTCCTACATCATGTGCAAAGCGATGAACCGGTCGCTGCCGAACGTGATCTTGGGCGGGTACGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCG GGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGG AGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCG AGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCGGATCAGGTGGTTGTGATGAAGCGTTCGCTTGGCGTCGG TTACGCGGCAGTGGACAACCCGATC TTCTACAAACCGAACACCTCGATGTTGCTCGG TG ACGCG AAG AAG ACGTGCGACGCCCTGTTGGGCAA GATTAAGGAAGACAACT ]
[+] EMBL BX628753 [ GATCGGTTCGTCCGGTGCCATCCTGTCCTACATCATGTGCAAAGCGATGAACCGGTCGCTGCCGAACGTGATCCTGGGCGGGTACGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCG GGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGG AGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCG AGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCAGATCAGGTGGTTGTGATGAAGCGTTCGCTTGGCGTCGG TTACGCGGCAGTGGACAACCCGATT TTCTACAAACCGAACACCTCGATGTTGCTCGG TG ACGCG AAG AAG ACGTGCGACGCCCTGCTGGGCAA GATTAAGGAAGACAACTGAGGGCAGAGTGACGAAATTATTGGGAAAGGGGGA TT TGGGTACTTTACTTCACTA AGCGCCGTTTGCCG ]
[+] EMBL AL930602 [ gcagaatcCCCGAGGT TTGGCTGTGCGTGGCCAAGGCGCAGTA CCGATCGCGGTAGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGNCGTAGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCAGATCAGGTGGTTGTGATGAAGCGTTCGCTTGGCGTCGGCTTACGCGGCAGTGGACAACCCGATCTTTCTACAAACCGAACACCTCGATGTTGCTCGGCTGCACGCGCAAGCAAGCACGTGCGACGCCCTGCTGGGCAACGATTAAGGAAGACAACTGANGGCAGAGTGACGAAATTATCGGGAAAGGGGGACTTCTGGGTACTTTACTTCACTANAGCGCCGTTTGCCGCACCGAGGCAGCANNCAGCAGCTAGGCCACCAANNNCACTTTAACTCTAACGCTGCACCTGGTAACTGTAACGAAAAANACCGCTGCGATAACCAACCGNTGGCCACTACNACTGCTCANCCAACTTCTATGGCTCTTACTGGTAACTGTGTACACAATAACAGCCGTNCAAG]
[+] EMBL BX610144 [ GTGGCCAAGGCGCAGTACCCGATCGCGG AGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTTGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCG AGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCAGATCAGGTGGTTGTGATGAAGCGTTCGCTTGGCGTCGG TTACGCGGCAGTGGACAACCCGAT ]
consensusID : consensus_6822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence
[CCGCAGGTTATAACGGTCGCTGCGAACGTGATCTTTNGCGGGTTNCGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCGGGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGGAGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCAGACTGAACGTGCTGCTGGCGGACGGCGGGCGTCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGACGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCGAGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGCAAGAGCGGATCAGGTGGTTGTGATGAAGCGTACGACTTGGCGTCTACTTACGCGANCATNGACAACCCGAATCTTCTACAAACCGAAAACANCCTCGNTCTANGCTCNGNCATGACGCGCAAGAAANNACGTGCNAACGCGCACNTGCTTCNGGTCATGAATNACAGGANNGACAANACTGATGGCGANGAATCTTGGAGACCGGCAGGACCTCAAAAATTAGTTGGCGNAANGTGNCNCACTCAGC]
[+] EMBL AL694765 [CCGCAGGTTATAACGGTCGCTGCGAACGTGATCTTTNGCGGGTTNCGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCGGGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGGAGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCAGACTGAACGTGCTGCTGGCGGACGGCGGGCGTCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGACGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCGAGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGCAAGAGCGGATCAGGTGGTTGTGATGAAGCGTACGACTTGGCGTCTACTTACGCGANCATNGACAACCCGAATCTTCTACAAACCGAAAACANCCTCGNTCTANGCTCNGNCATGACGCGCAAGAAANNACGTGCNAACGCGCACNTGCTTCNGGTCATGAATNACAGGANNGACAANACTGATGGCGANGAATCTTGGAGACCGGCAGGACCTCAAAAATTAGTTGGCGNAANGTGNCNCACTCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6822#0 TCGGTGCGACGGCCGCCATGTCGACTGCGATGGGCGTCACGCTGACGGCTGCCATCGGTG 60
consensus_6822#1 ------------------------------------------------------------
consensus_6822#0 GCGCCGACATGCCGGTCGTCATCACGGTGCTGAACTCGTACTCCGGCTGGGCGCTGTGCG 120
consensus_6822#1 ------------------------------------------------------------
consensus_6822#0 CGGAAGGGTTCATGCTGAACAACAACCTGATGACGATCGTGGGCGCCCTGATCGGTTCGT 180
consensus_6822#1 ------------------------------------------------------------
consensus_6822#0 CCGGTGCCATCCTGTCCTACATCATGTGCAAAGCGATGAACCGGTCGCTGCCGAACGTGA 240
consensus_6822#1 ----------------------------CCGCAGGTTATAACGGTCGCTGC-GAACGTGA 31
* * * * ********** ********
consensus_6822#0 TCCTGGGCGGGT-ACGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGC 299
consensus_6822#1 TCTTTNGCGGGTTNCGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGC 91
** * ****** **********************************************
consensus_6822#0 ACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATC 359
consensus_6822#1 ACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATC 151
************************************************************
consensus_6822#0 ATCATCACGCCCGGGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGGAGATG 419
consensus_6822#1 ATCATCACGCCCGGGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGGAGATG 211
************************************************************
consensus_6822#0 GTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGC 479
consensus_6822#1 GTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGC 271
************************************************************
consensus_6822#0 CGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGA-GGCGGGCGTCCCGTACGACGACGT 538
consensus_6822#1 CGGATGCCGGGCAGACTGAACGTGCTGCTGGCGGACGGCGGGCGTCC-GTACGACGACGT 330
************ ******************** *********** ************
consensus_6822#0 GCTCGAGATGGAGGAGATCAACGAAGACTTTGACGA-GACTGATCTGGTGCTGGTGATCG 597
consensus_6822#1 GCTCGAGATGGAGGAGATCAACGAAGACTTTGACGACGACTGATCTGGTGCTGGTGATCG 390
************************************ ***********************
consensus_6822#0 GTGCGAACGACACGGTGAACAGTGCGGCCGAGGACGACCCGAACTCGATCATTGCCGGCA 657
consensus_6822#1 GTGCGAACGACACGGTGAACAGTGCGGCCGAGGACGACCCGAACTCGATCATTGCCGGCA 450
************************************************************
consensus_6822#0 TGCCGGTGCTGCGCGTCTGG--AAGGCAGATCAGGTGGTTGTGATGAAGCGTTCG-CTTG 714
consensus_6822#1 TGCCGGTGCTGCGCGTCTGGCAAGAGCGGATCAGGTGGTTGTGATGAAGCGTACGACTTG 510
******************** * ** ************************ ** ****
consensus_6822#0 GCGTCGG-TTACGCGGCAGTGGACAACCCGA-TCTTCTACAAACCGAACACCTCGATGTT 772
consensus_6822#1 GCGTCTACTTACGCGANCATNGACAACCCGAATCTTCTACAAACCGAAAACANCCTCGNT 570
***** ******* * ********** **************** ** * * *
consensus_6822#0 GCTCGGTGACGCGAAGAAGACGTGCGACGCCCTGCTGG-GCAAGATTAAGGAAGACAACT 831
consensus_6822#1 CTANGCTCNGNCATGACGCGCAAGAAANNACGTGCNAACGCGCACNTGCTTCNGGTCATG 630
* * * * * * * *** ** * * *
consensus_6822#0 GAGGGCAG-AGTGACGAAATTATTGGGAAAGGGGGATTTGGGTACTTTACTTCACTAAGC 890
consensus_6822#1 AATNACAGGANNGACAANACTGATGGCGANGAATC-TTGGAGACCGGCAGGACCTCAAAA 689
* *** * *** * * * *** * * ** * * * * * **
consensus_6822#0 GCCGTTTGCCGCACCGAGGCAGCANNCAGCAGCTAGGCCACCAANNNCACTTTAACTCTA 950
consensus_6822#1 ATTAGTTGGCGNAANGTGNCN-CACTCAGC------------------------------ 718
*** ** * * * * ** ****
consensus_6822#0 ACGCTGCACCTGGTAACTGTAACGAAAAANACCGCTGCGATAACCAACCGNTGGCCACTA 1010
consensus_6822#1 ------------------------------------------------------------
consensus_6822#0 CNACTGCTCANCCAACTTCTATGGCTCTTACTGGTAACTGTGTACACAATAACAGCCGTN 1070
consensus_6822#1 ------------------------------------------------------------
consensus_6822#0 CAAG 1074
consensus_6822#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||