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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1469 fasta sequence
[CCGGTTCTCGACGCCGGTGCGATGGTTGCGCTGGCGAAGAAATGGCGAACGGTGCCACCACGCTACCATTGCGAAGCGGGCGCAATCACCCAGATGCACCGGATACCTTCGTCGGGCTCGCTGTACCTGCCGATCAAGACGAACGCTTGCAAGGGAACCGACACGGAGGTACGCTATCTGGAGCATGTGCAGGCCGTCATCACGGCGAACGCCAGCAGACGTGGGGATTTGGAGCTGTTCCTCACCTCGCCGATGGGCACTAGATCAATGATACTGAGCAAACGGGCTAATGACGATGATCGACGCGATGGCTTCACCAAATGGCCGTTCATGACGACCCACACCTGGGGCGAATATCCGCAGGGCACATGGATGTTGGAGGCCACCTTCAACTCGCAGGAAAGTCGCTCCGGCTGGATCAAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCGGCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATGTAACCGTCTGTAATGTAACTCA------CACAC--ACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAAAGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCATAGCGCATATATAGATCTCTATACATATATACATAGATATATATATTTATACATATGGATGTTTGTAGTATTTATGTTCATGAGGGGTAGCTGAGAAGAGCTGTATATCTCTTACCTTGTAGAGCAGCTTGCCAACATCATCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCATGTTAACCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTAAGAAATGTGAACTGTGTGGGTGTGTGCGTGTGTGCGGCACCGAACACAAATTCAATCCCATTTTCGGTTCCGTTTGCGGTTAGCCCAGCTAGCTACACTCAGGTCTAGGTCTGGTTGGGCCGGGACACTCCCGGCGCAGCGAGACAAGGTGAAGGGCTGTAAGGAAAACAATTGCAACAGGAAGGCCCAACGTGGTGGAGCGCACACCGTTCCGAGCGATGGACACCGTCCGGTTCCAATTGTTGTCTATTTATACATAGCAGAGAGAAAGAGAGATAGGTGGAGAGAGTAGTGCACCCGTTATTACGTTTCCAAAGGAAGATTCTACCGATAGTTCCGCGTTGGGTTGTTGGGATTTTTGGTTACGTGTTTTAAATATCTATTTTGCTCCATCCGTTACTCCGTATCAGCTCCATCATTCGTCCTCTAAGCGTATTGATTTGTATATAGACGTATAAAATACAAATGCAACTATATTTACTAAAAACCAAGTATCTAGCAAGTGATGATTTCGTTGT]
[+] EMBL BM633599 [CCGGTTCTCGACGCCGGTGCGATGGTTGCGCTGGCGAAGAAATGGCGAACGGTGCCACCACGCTACCATTGCGAAGCGGGCGCAATCACCCAGATGCACCGGATACCTTCGTCGGGCTCGCTGTACCTGCCGATCAAGACGAACGCTTGCAAGGGAACCGACACGGAGGTACGCTATCTGGAGCATGTGCAGGCCGTCATCACGGCGAACGCCAGCAGACGTGGGGATTTGGAGCTGTTCCTCACCTCGCCGATGGGCACTAGATCAATGATACTGAGCAAACGGGCTAATGACGATGATCGACGCGATGGCTTCACCAAATGGCCGTTCATGACGACCCACACCTGGGGCGAATATCCGCAGGGCACATGGATGTTGGAGGCCACCTTCAACTCGCAGGAAAGTCGCTCCGGCTGGATCAAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCGGCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATGTAACCGTCTGTAATGTAACTCA CACAC ACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGT ]
[+] EMBL BX609756 [ GGCCACCTTCAACTCACAGGAAAGTCGCTCCGGCTGGATTAAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCGGCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATATAACCGTCTGTAATGTAACTCACACTCTCACACATACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAAAGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCATAGCGCATATATAGATCTCTATACATATATACATAGATATATATATTTATACATATGGATGTTTGTAGTATTTATGTTCATGAGGGGTAGCTGAGAAGAGCTGTATATCTCTTACCTTGTAGAGCAGCTTGCCAACATCATCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCATGTTAACCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTA ]
[+] EMBL BM591681 [ ccgAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATGTAACCGTCTGTAATGTAACTCA CACAC ACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAAAGACCTTCTACACAACCAGTACGCCCCAAAGGTATATGGTG TCCTGGAATGGCAGCATAGCGCATATATAGATCTCTATACATATATACATAGATATATATATTTATACATATGGATGTTTGTAGTATTTATGTTCATGAGGGGTAGCTGAGAAGAGCTGTATATCTCTTACCTTGTAGAGCAGCTTGCCAACATCATCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCATGTTAATCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTAAGAAATGTGAACTGTGTGGGTGTGTGCGTGTGTGCGGCACCGAACACAAATTCAATCCCATTTTCCGTTCGGTTCGCGGTTAGCCCAGCTAGCTACACTCAGGTCTAGGTCTGGTTGGGCCGGGACACTCCCGGGGCAGTGAGACAAGGTGAAGGGCTGTAAGGAAAACGATTGCAACAGGAAGGGCCAACGTGGTGGAGCGC ]
[+] EMBL BX617617 [ TATGGATGTTTGTAGTATTTATGTTCATGAGGGGTAGCTGAGAAGAGCTGTATATCTCTTACCTTGTAGAGCAGCTTGCCAACATCATCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCATGTTAACCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTAAGAAATGTGAACTGTGTGGGTGTGTGCGTGTGTGCGGCACCGAACACAAATTCAATCCCATTTTCGGTTCCGTTTGCGGTTAGCCCAGCTAGCTACACTCAGGTCTAGGTCTGGTTGGGCCGGGACACTCCCGGCGCAGCGAGACAAGGTGAAGGGCTGTAAGGAAAACAATTGCAACAGGAAGGCCCAACGTGGTGGAGCGCACACCGTTCCGAGCGATGGACACCGTCCGGTTCCAATTGTTGTCTATTTATACATAGCAGAGAGAAAGAGAGATAGGTGGAGAGAGTAGTGCACCCGTTATTACGTTTCCAAAGGAAGATTCTACCGATAGTTCCGCGTTGGGTTGTTGGGATTTTTGGTTACGTGTTTTAAATATCTATTTTGCTCCATCCGTTACTCCGTATCAGCTCCATCATTCGTCCTCTAAGCGTATTGATTTGTATATAGACGTATAAAATACAAATGCAACTATATTTACTAAAAACCAAGTATCTAGCAAGTGATGATTTCGTTGT]
[+] EMBL BX609647 [ TCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCATGTTAACCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTAAGAAATGTGAACTGTGTGGGTGTGTGCGTGTGTGCGGCACCGAACACAAATTCAATCCCATTTTCGGTTCCGTTTGCGGTTAGCCCAGCTAGCTACACTCAGGTCTAGGTCTGGTTGGGCCGGGACACTCCCGGCGCAGCGAGACAAGGTGAAGGGCTGTAAGGAAAACAATTGCAACAGG AGGCCCAACGTGGTGGAGCGCACACCGTTCCGAGCGATGGACACCGTCCGGTTCCAATTGTTGTCTATTTATACATAGCAGAGAGAAAGAGAGATAGGTGGAGAGAGTAGTGCACCCGTTATTACGTTTCCAAAGGAAGATTCTACCGATAGTTCCGCGTTGGGTTGTTGGGATTTTTGGTTACGTGTTTTAAATATCTATTTTGCTCCATCCGTTACTCCGTATCAGCTCCATCATTCGTCCTCTAAGCGTATTGATTTGTATATAGACGTATAAAATACAAATGCAAC ]
consensusID : consensus_6832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[CAGAATCCCCCGAGGTTTTGGAGCCCACCTTCAACTCACAGGAAAGTCGCTCCGNCTGGATTAAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCGGCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATATAACCGTCTGTAATGTAACTCACACTCTCACACATACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAAAGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCACTAGCGCAATATACTACGACTCCTCCTAATAACATACTATACACTACNNCACTACTACTACTACTTNCTACTANCACTTACTGCGNACTGCTCCNGCTACCCTACTCTCTCACCTGCTCTCCACTTGACGCGCGAGCTACGCCTGGAANCAAAGCAGCCTGTTCANTACTTCCTCTTACCATATGCTCACGCACGCCAACGCTTGCCCAACAACTCAACTCCTACAA]
[+] EMBL AL694875 [CAGAATCCCCCGAGGTTTTGGAGCCCACCTTCAACTCACAGGAAAGTCGCTCCGNCTGGATTAAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCGGCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATATAACCGTCTGTAATGTAACTCACACTCTCACACATACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAAAGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCACTAGCGCAATATACTACGACTCCTCCTAATAACATACTATACACTACNNCACTACTACTACTACTTNCTACTANCACTTACTGCGNACTGCTCCNGCTACCCTACTCTCTCACCTGCTCTCCACTTGACGCGCGAGCTACGCCTGGAANCAAAGCAGCCTGTTCANTACTTCCTCTTACCATATGCTCACGCACGCCAACGCTTGCCCAACAACTCAACTCCTACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6832#0 CCGGTTCTCGACGCCGGTGCGATGGTTGCGCTGGCGAAGAAATGGCGAACGGTGCCACCA 60
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 CGCTACCATTGCGAAGCGGGCGCAATCACCCAGATGCACCGGATACCTTCGTCGGGCTCG 120
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 CTGTACCTGCCGATCAAGACGAACGCTTGCAAGGGAACCGACACGGAGGTACGCTATCTG 180
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 GAGCATGTGCAGGCCGTCATCACGGCGAACGCCAGCAGACGTGGGGATTTGGAGCTGTTC 240
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 CTCACCTCGCCGATGGGCACTAGATCAATGATACTGAGCAAACGGGCTAATGACGATGAT 300
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 CGACGCGATGGCTTCACCAAATGGCCGTTCATGACGACCCACACCTGGGGCGAATATCCG 360
consensus_6832#1 ----------------------------------------------------------CA 2
*
consensus_6832#0 CAGGGCACATGGATGTTGGAGGCCACCTTCAACTCGCAGGAAAGTCGCTCCGGCTGGATC 420
consensus_6832#1 GAATCCCCCGAGGTTTTGGAGCCCACCTTCAACTCACAGGAAAGTCGCTCCGNCTGGATT 62
* * * * * ****** ************* **************** ******
consensus_6832#0 AAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCG 480
consensus_6832#1 AAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCG 122
************************************************************
consensus_6832#0 GCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAAT 540
consensus_6832#1 GCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAAT 182
************************************************************
consensus_6832#0 TAAAATGTAACCGTCTGTAATGTAACTCACAC--------ACACACACACGTACACGTAC 592
consensus_6832#1 TAAAATATAACCGTCTGTAATGTAACTCACACTCTCACACATACACACACGTACACGTAC 242
****** ************************* * ******************
consensus_6832#0 ACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAA 652
consensus_6832#1 ACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAA 302
************************************************************
consensus_6832#0 AGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCA- 711
consensus_6832#1 AGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCAC 362
***********************************************************
consensus_6832#0 TAGCGCATATATAGATCTCTATACATATATACATAGATATATATATTTATACATATGGAT 771
consensus_6832#1 TAGCGCA-ATATAC-------TACGACTCCTCCTAATAACATAC---TATACACTACNNC 411
******* ***** *** * * ** * *** ******
consensus_6832#0 GTTTGTAGTATTTATGTTCATGAGGGGTAGCTGAGAAGAGCTGTATATCTCTTACCTTGT 831
consensus_6832#1 ACTACTACTACTACTTNCTACTANCACTTACTGCGNACTGCTCCNGCTACCCTACTCT-- 469
* ** ** * * * * * *** * * *** * * *** *
consensus_6832#0 AGAGCAGCTTGCCAACATCATCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCA 891
consensus_6832#1 -------CTCACCTGCTC-------TCCACTTGACGCGCGAGCTACGCCTGGAANCAAAG 515
** ** * * ** * ** ** *** * ** * * ** **
consensus_6832#0 TGTTAACCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTA 951
consensus_6832#1 ---CAGCCTGTTCANTACTTCCTCTTACCATA--TGCTCACGCACGCCAACGCTTGCCCA 570
* ** * * **** **** ** * * * * * * *
consensus_6832#0 AGAAATGTGAACTGTGTGGGTGTGTGCGTGTGTGCGGCACCGAACACAAATTCAATCCCA 1011
consensus_6832#1 ACAACT-CAACTCCTACAA----------------------------------------- 588
* ** * * *
consensus_6832#0 TTTTCGGTTCCGTTTGCGGTTAGCCCAGCTAGCTACACTCAGGTCTAGGTCTGGTTGGGC 1071
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 CGGGACACTCCCGGCGCAGCGAGACAAGGTGAAGGGCTGTAAGGAAAACAATTGCAACAG 1131
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 GAAGGCCCAACGTGGTGGAGCGCACACCGTTCCGAGCGATGGACACCGTCCGGTTCCAAT 1191
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 TGTTGTCTATTTATACATAGCAGAGAGAAAGAGAGATAGGTGGAGAGAGTAGTGCACCCG 1251
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 TTATTACGTTTCCAAAGGAAGATTCTACCGATAGTTCCGCGTTGGGTTGTTGGGATTTTT 1311
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 GGTTACGTGTTTTAAATATCTATTTTGCTCCATCCGTTACTCCGTATCAGCTCCATCATT 1371
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 CGTCCTCTAAGCGTATTGATTTGTATATAGACGTATAAAATACAAATGCAACTATATTTA 1431
consensus_6832#1 ------------------------------------------------------------
consensus_6832#0 CTAAAAACCAAGTATCTAGCAAGTGATGATTTCGTTGT 1469
consensus_6832#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||