These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1116 fasta sequence [AAAGCAAATGAAGAGTGTATCAGACCTAAATGAATTTAATCAACGGCTAGAAGACGAAACGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATTACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCAGAGCTAGACGAATTTAATCGTCGACTACGAAACGAGG-AAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTACAACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTGAGTTACAAAAGAAAACCGGAACAACACTAAATGCCC-GCGATACAGTACTACAGCTAGTTGTTGAAATATGGCTCAACATTTGACTACCGTATGCTATGCGACGATGAAGAGATCTATGGCAAATCACAAAGATTATTCGTGCTATAGTTTGTATGAAAATAAATGATAGAAATACAGCCAGTGC] [+] EMBL CNS08KZM [AAAGCAAATGAAGAGTGTATCAGACCTAAATGAATTTAATCAACGGCTAGAAGACGAAACGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATTACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAAACAGAGCTAGACGAATTTAATCGTTGACTACGAAACGAGG AAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTACAACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTTAGTTACAAAAGAAAACCGGAACAACACTAAAT ] [+] EMBL CNS08G4N [ AAGCAAATGAAGAGTGTATCAGACCTAAATGAATTTAATCAACGGCTAGAAGACGAAACGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATTACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGCGGTATACTGCCAGCTTCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCAGAGCTAGACGAATTTAATCGTCGACTACGAAACGAGG AAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTAT ] [+] EMBL CNS08UCB [ CAAATGAAGAGTGTATCAGACCTAAATGAATTTAATCAACGGCTAGAAGACGAAACGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATTACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCAGAGCTAGACGAATTTAATCGTCGACTACGAAACGAGG AAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGTTGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTACAACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTGAGTTACAAAAGAAAACCGGAACAACACTAAATGCCCGGCGATACAGTACTACAGCTAGTTGTTGAAATATGGCTCAAC ] [-] EMBL CNS08UCC [ ATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCCGCTGGCGAGGGCGCAAAAGTTTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTTGCTGGCGAACACCCTTACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACAAACAAGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCAGAGCTAGACGAATTTAATCGTCGACTACGAAACGAGG AAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTACAACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTGAGTTACAAAAGAAAACCGGAACAACACTAAATGCCC GCGATACAGTACTACAGCTAGTTGTTGAAATATGGCTCAACATTTGACTACCGTATGCTATGCGACGATGAAGAGATCTATGGCAAATCACAAAGATTATTCGTGCTATAGTTTGTATGAAAATAAATGATAGAAATACAGCCA ] [-] EMBL CNS08KZN [ CGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACAAACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCAGAGCTAGACGAATTTAATCGTTGACTACGAAACGAGGTTAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTACAACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTGAGTTACAAAAGAAAACCGGAACAACACTAAATGCCC GCGATACAGTACTACAGCTAGTTGTTGAAATATGGCTCAACATTTGACTACCGTATGCTATGCGACGATGAAGAGATCTATGGCAAATCACAAAGATTATTCGTGCTATAGTTTGTATGAAAATAAATGATAGAAATACAGCCAGTGC] consensusID : consensus_6835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCTAGAAGACGAAAAGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATCACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAACAAAGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACAGCCTCACAAGCGACGTATACCGGATGGGTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGTACGTTCAATCTGAAGCAGGTTAGCAGCGAGCCAGTGTGTGCTAAACGAATTTAATCGTCGACTACGAAACGAGGAATATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTT] [+] EMBL BM629966 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCTAGAAGACGAAAAGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATCACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAACAAAGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACAGCCTCACAAGCGACGTATACCGGATGGGTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGTACGTTCAATCTGAAGCAGGTTAGCAGCGAGCCAGTGTGTGCTAAACGAATTTAATCGTCGACTACGAAACGAGGAATATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6835#0 AAAGCAAATGAAGAGTGTATCAGACCTAAATGAATTTAATCAAC--GGCTAGAAGACGAA 58 consensus_6835#1 -------------------CCGCCCACGCGTCCGCCCACGCGTCCGGGCTAGAAGACGAA 41 * * * * * * ************** consensus_6835#0 ACGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGAT 118 consensus_6835#1 AAGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGAT 101 * ********************************************************** consensus_6835#0 TACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGC 178 consensus_6835#1 CACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGC 161 *********************************************************** consensus_6835#0 TGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGT 238 consensus_6835#1 TGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGT 221 ************************************************************ consensus_6835#0 AGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGC 298 consensus_6835#1 AGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGC 281 ************************************************************ consensus_6835#0 CTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGAT 358 consensus_6835#1 CTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGAT 341 ************************************************************ consensus_6835#0 GAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCT 418 consensus_6835#1 GAACAACAAAGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCT 401 ***** *** ************************************************** consensus_6835#0 TCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTT 478 consensus_6835#1 TCCTTCGCTGGCGAACAGCCTCACAAGCGACGTATACCGGATGGGTCGGTGCGAGTAGTT 461 ***************** ************************** *************** consensus_6835#0 CCGCTTTGTTTAGCACACACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCA 538 consensus_6835#1 CCGCTTTGTTTAGCACACACTGGCTGTACGTTCAATCTGAAGCAGGTTAGCAGCGAGCCA 521 ************************** ** ****************************** consensus_6835#0 GAG----CTAGACGAATTTAATCGTCGACTACGAAACGAGGAAAATATGAAGCAGGTGAT 594 consensus_6835#1 GTGTGTGCTAAACGAATTTAATCGTCGACTACGAAACGAGGAATATATGAAGCAGGTGAT 581 * * *** ******************************** **************** consensus_6835#0 AAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCT 654 consensus_6835#1 AAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCT 641 ************************************************************ consensus_6835#0 CGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAA 714 consensus_6835#1 CGACATTCTTTT------------------------------------------------ 653 ************ consensus_6835#0 AATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGA 774 consensus_6835#1 ------------------------------------------------------------ consensus_6835#0 TGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGC 834 consensus_6835#1 ------------------------------------------------------------ consensus_6835#0 AAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTAC 894 consensus_6835#1 ------------------------------------------------------------ consensus_6835#0 AACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTGAGTTACAAAAGAAAACCGGAAC 954 consensus_6835#1 ------------------------------------------------------------ consensus_6835#0 AACACTAAATGCCCGCGATACAGTACTACAGCTAGTTGTTGAAATATGGCTCAACATTTG 1014 consensus_6835#1 ------------------------------------------------------------ consensus_6835#0 ACTACCGTATGCTATGCGACGATGAAGAGATCTATGGCAAATCACAAAGATTATTCGTGC 1074 consensus_6835#1 ------------------------------------------------------------ consensus_6835#0 TATAGTTTGTATGAAAATAAATGATAGAAATACAGCCAGTGC 1116 consensus_6835#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||