These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1187 fasta sequence [CCGGTTTTGTAAACACTGTTCTACTCCAACTATCAAACCGCTCCCACGGTATCGTCTTCAAATGACGCCGGATGCAGCGACCTCTTTCTTCAATAGACCTTGAATGAAACGTAATCTAATAGCGAGTGTGTTATGCGGATTGCATGAATGTTGGCGTTTGTAGAACGAGCATTAAGGAAATGGAAGGAAAAGGCATTAGGCAGTGATTATATGGCTTCAGCTGTGCGGCTTACATCGGGAAGGCTCTAGCAAAAAGCAGCGTTCAGTGTATGACATAATGCAGGGCAGGCAAAACACATCCTTCGGTGGTGTGAAAATGTCACAACATCAGAAAAAGGAGGAACACACAAAAAAAAACGAAATACAAAATCAGGTGATAAAAACAACATCCATCAAGTGCAGATGAAGGACAGTGCAAAAACATAATGTCTTGCTCTGCTCGGTTTTGCGGTAACACAGCAAGCGTGTCACATTGCGAGTGTAAGCACACAGACGCACACACACACACACACACCAGTAACAAACAATAACATCGTAATGGAAGGATGTTAGTGCCAGTGATACAGATGAGGACAACAATGTAACGTGCAGACCAATCTTGAATGGCGTGAAATAGAACGGTAAAAAAACGCAGTATTTGTCATGCAGAAGAAAGAACCCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATATTAGACGCAACCACAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAAC-AAAAAAAAAAGCAAGCAAGCAACAAACAGCTACTAAAAGAAGATGAAGAAAGGAGGGAGAAAAATATAATAATTCACATAATACGCACACCCAAGAAGCCCACATGGATTGAGTATGTTTTGCTTTTGAGCAGAAGACACACGGCGTAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGACACACACATACAGCCATAAAAAGCATAAAAGCAACAGC-AAAAAAAAAGACGAAACAGGACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAAAAACAAACAGAAAAAAACAGAGCAAACGGCAACGCAAAGGCATGGCAAAGGCATGAAGAAGTTAA] [+] EMBL BM602335 [CCGGTTTTGTAAACACTGTTCTACTCCAACTATCAAACCGCTCCCACGGTATCGTCTTCAAATGACGCCGGATGCAGCGACCTCTTTCTTCAATAGACCTTGAATGAAACGTAATCTAATAGCGAGTGTGTTATGCGGATTGCATGAATGTTGGCGTTTGTAGAACGAGCATTAAGGAAATGGAAGGAAAAGGCATTAGGCAGTGATTATATGGCTTCAGCTGTGCGGCTTACATCGGGAAGGCTCTAGCAAAAAGCAGCGTTCAGTGTATGACATAATGCAGGGCAGGCAAAACACATCCTTCGGTGGTGTGAAAATGTCACAACATCAGAAAAAGGAGGAACACACAAAAAAAAACGAAATACAAAATCAGGTGATAAAAACAACATCCATCAAGTGCAGATGAAGGACAGTGCAAAAACATAATGTCTTGCTCTGCTCGGTTTTGCGGTAACACAGCAAGCGTGTCACATTGCGAGTGTAAGCACACAGACGCACACACACACACACACACCAGTAACAAACAATAACATCGTAATGGAAGGATGTTAGTGCCAGTGATACAGATGAGGACAACAATGTAACGTGCAGACCAATCTTGAATGGCGTGAAATAGAACGGTAAAAAAACGCAGTATTTGTCATGCAGAAGAAAGAAACCCCAACCAAACAC ] [+] EMBL BX613058 [ AAAAAAACGCAGTATTTGTCATGCAGAAGAAAGAACCCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATATTAGACGCAACCACAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAAC AAAAAAAAAAGCAAGCAAGCAACAAACAGCTACTAAAAGAAGATGAAGAAAGGAGGGAGAAAAATATAATAATTCACATAATACGCACACCCAAGAAGCCCACATGGATTGAGTATGTTTTGCTTTTGAGCAGAAGACACACGGCGTAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGACACACACATACAGCCATAAAAAGCATAAAAGCAACAGC AAAAAAAAAGACGAAACAGGACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAAAAACAAACAGAAAAAAACAGAGCAAACGGCAACGCAAAGGCATGGCAAAGGCATGAAGAAGTTAA] [+] EMBL BX610863 [ TTTGTCATGCAGAAGAAAGAACCCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATAGTAGACGCAACCACAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAAAGCAAGCAAGCAACAAACAGCTACTAAAAGAAGATGAAGAAAGGAGGGAGAAAAATATAATAATTCACATAATACGCACACCCAAGAAGCCCACATGGATTGAGTATGGTTTGCTTTTGAGCAGAAGACACACGGCGTAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGACACACACATACAGCCATAAAAAGCATAAAAGCAACAGCAAAAAAAAAAGACGAAACAGGACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAAAAACAAACAGAAAAAAACAGAGCAAATGGCAACGCAAAGGCATGGCAAAGGCATGAAGA ] [+] EMBL BX610864 [ CACAAAAAAAAAACTCACAAGGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATCACAGGAATATACAGACAAGCTCCGGCAACAAACAAAAAAAAAAAGCAAGCAAGCAACAAACAGCTACTAAAAGAAGAAGAAGA ] consensusID : consensus_6848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [CAGAAGAAAGAAACCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATAGTAGACGCAACCAAAAAAAAAAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAAGCAAGCAAGCAACAAACATCTACTAAAAGAAGATGAAGAAAGGAGGGAGGAAAATATAATAATTCACATAATACGCACACCGAAGAAGCCCACATGGATTGAGTATGGTTTGCTTTTGAGCAGAACACACAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGATACACACATACAGCCATAAAAAGCATAAAAGCTACAGCAAAAAAAGGCAAAACAGAACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAATAAACAGAAAAAAAACAGAGCAAACGGCAACGCAAAGGCATGAAGAAGTTAATGTATTACGCAGAAAAAAAGAGACAAGAAAAGGCAAAGCAAGTCACATGATGCATGATGG] [+] EMBL BX615523 [CAGAAGAAAGAAACCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATAGTAGACGCAACCAAAAAAAAAAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAAGCAAGCAAGCAACAAACATCTACTAAAAGAAGATGAAGAAAGGAGGGAGGAAAATATAATAATTCACATAATACGCACACCGAAGAAGCCCACATGGATTGAGTATGGTTTGCTTTTGAGCAGAACACACAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGATACACACATACAGCCATAAAAAGCATAAAAGCTACAGCAAAAAAAGGCAAAACAGAACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAATAAACAGAAAAAAAACAGAGCAAACGGCAACGCAAAGGCATGAAGAAGTTAATGTATTACGCAGAAAAAAAGAGACAAGAAAAGGCAAAGCAAGTCACATGATGCATGATGG] consensusID : consensus_6848#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 111 fasta sequence [GGGAAACCAGCAGACAGGAGCAGACATCACAGGAAGATACAGACAAGCGGCGGCAACAAACAAAAAAAAAAAGCAAGCAAGCAACAAACAGCGACTAAAAGAAGAAGAAGA] [+] EMBL BX610862 [GGGAAACCAGCAGACAGGAGCAGACATCACAGGAAGATACAGACAAGCGGCGGCAACAAACAAAAAAAAAAAGCAAGCAAGCAACAAACAGCGACTAAAAGAAGAAGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6848#0 CCGGTTTTGTAAACACTGTTCTACTCCAACTATCAAACCGCTCCCACGGTATCGTCTTCA 60 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ------------------------------------------------------------ consensus_6848#0 AATGACGCCGGATGCAGCGACCTCTTTCTTCAATAGACCTTGAATGAAACGTAATCTAAT 120 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ------------------------------------------------------------ consensus_6848#0 AGCGAGTGTGTTATGCGGATTGCATGAATGTTGGCGTTTGTAGAACGAGCATTAAGGAAA 180 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ------------------------------------------------------------ consensus_6848#0 TGGAAGGAAAAGGCATTAGGCAGTGATTATATGGCTTCAGCTGTGCGGCTTACATCGGGA 240 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ------------------------------------------------------------ consensus_6848#0 AGGCTCTAGCAAAAAGCAGCGTTCAGTGTATGACATAATGCAGGGCAGGCAAAACACATC 300 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ------------------------------------------------------------ consensus_6848#0 CTTCGGTGGTGTGAAAATGTCACAACATCAGAAAAAGGAGGAACACACAAAAAAAAACGA 360 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ------------------------------------------------------------ consensus_6848#0 AATACAAAATCAGGTGATAAAAACAACATCCATCAAGTGCAGATGAAGGACAGTGCAAAA 420 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ------------------------------------------------------------ consensus_6848#0 ACATAATGTCTTGCTCTGCTCGGTTTTGCGGTAACACAGCAAGCGTGTCACATTGCGAGT 480 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ------------------------------------------------------------ consensus_6848#0 GTAAGCACACAGACGCACACACACACACACACACCAGTAACAAACAATAACATCGTAATG 540 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ------------------------------------------------------------ consensus_6848#0 GAAGGATGTTAGTGCCAGTGATACAGATGAGGACAACAATGTAACGTGCAGACCAATCTT 600 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ------------------------------------------------------------ consensus_6848#0 GAATGGCGTGAAATAGAACGGTAAAAAAACGCAGTATTTGTCATGCAGAAGAAAGAACCC 660 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 ---------------------------------------------CAGAAGAAAGAAACC 15 consensus_6848#0 CAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATATTAGACGCAACCACA 720 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 CAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATAGTAGACGCAACCAAA 75 consensus_6848#0 AAAAAAAAA-------CTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATAC 773 consensus_6848#2 -----------------------------------GGGAAACCAGCAGACAGGAGCAGAC 25 consensus_6848#1 AAAAAAAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATAC 135 * ********** ********* ** consensus_6848#0 ATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAA-GCAAGCAAGCAAC 832 consensus_6848#2 ATCACAGGAAGATACAGACAAGCGGCGGCAACAAACAAAAAAAAAAAGCAAGCAAGCAAC 85 consensus_6848#1 ATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAA-GCAAGCAAGCAAC 194 ** ******* ************ ********************* ************* consensus_6848#0 AAACAGCTACTAAAAGAAGATGAAGAAAGGAGGGAGAAAAATATAATAATTCACATAATA 892 consensus_6848#2 AAACAGCGACTAAAAGAAGAAGAAGA---------------------------------- 111 consensus_6848#1 AAACATCTACTAAAAGAAGATGAAGAAAGGAGGGAGGAAAATATAATAATTCACATAATA 254 ***** * ************ ***** consensus_6848#0 CGCACACCCAAGAAGCCCACATGGATTGAGTATGTTTTGCTTTTGAGCAGAAGACACACG 952 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 CGCACACCGAAGAAGCCCACATGGATTGAGTATGGTTTGCTTTTGAGCAGAACACACA-- 312 consensus_6848#0 GCGTAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGACA 1012 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 -----AGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGATA 367 consensus_6848#0 CACACATACAGCCATAAAAAGCATAAAAGCAACAGCAAAAAAAAAGACGAAACAGGACAT 1072 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 CACACATACAGCCATAAAAAGCATAAAAGCTACAGCAAAAAA--AGGCAAAACAGAACAT 425 consensus_6848#0 GTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAAAAACAAACAG 1132 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 GTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAATAA--ACAGA 483 consensus_6848#0 AAAAAAACAGAGCAAACGGCAACGCAAAGGCATGGCAAAG-----GCATGAAGAAGTTAA 1187 consensus_6848#2 ------------------------------------------------------------ consensus_6848#1 AAAAAAACAGAGCAAACGGCAACGCAAAGGCATGAAGAAGTTAATGTATTACGCAGAAAA 543 consensus_6848#0 -------------------------------------------- consensus_6848#2 -------------------------------------------- consensus_6848#1 AAAGAGACAAGAAAAGGCAAAGCAAGTCACATGATGCATGATGG 587 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||