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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 976 fasta sequence
[GCCTGCGCACTGTTGAACCGCACGCTTCGTGATACGCAAGTAGCTCGTCCCTGGTTTGCGCAAGTTTTAAACCTTAGATTTCGCACGATGAGTTTGTCCCGGTTCCGTTTGATTACGTTCGATGTACATAATACGCTGCTACAGTTCCGCTCTAGCCCAGGCAAGAAGTATGGTGAAATTGGTGCAATGTTCGGTATAAGCAACAACAACAACCAACTAGTCTCAAACTACGTCCAAAGCTGGCACAAAATGAATCGGCTCCATCCGAACTTTGGACTGAAGACGAAAATTACCTAC-AAACAATGGTGGCAGATGATGATAGACGGCATTTTTAATGAAAATGGTACACACAACACGCCGCCAGAGAAGATTGAACAGATGACCGAGCATTTCATGGAGTACTTCAAAACGAGCGTCTTTTGGCAACATTGCTATGGTTCGGTGGACTTTCTGAATTACCTGAAGCTTCAGCGGCATGTGGAGTCCGGTGGCCAGAAAGAACCACCGTTCAAGCTGGGAGTGATCTCAAACTTTGACCCCCGGCTAGACGTATTGTTGCGGAACATGAAAATCAACCACTATTTCGACTTTGTGCTGAACTCGTATGATGTGGGCTATATGAAACCGGCCCCGGAAATATTTGACCGTGCGATGAAGGCAGCCGAGATTAAGGATCTCAAACCACACCAATGTTTACATATTGGGGCGACACCGGCGACCGATTACTTTGGCGCACGAAATGCTGGATGGTACAGTCTGCTGGTGCACGAAAAGTCGGCGGAAGAGTTGACACGCAAATACGGCCAGTTGGTCGAGGACAACCATGTGTTTTCTAGTCTGTTTGATATTCACAAGAAGATATCGAATGATTACATGAGATGGTAAATGATATTAGCTGTGTGTGAGTGAGTGAAAATGTTACACTTTATGAATAAAACTGTTTTCAATTTGAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CNS09KXT [GCCTGCGCACTGTTGAACCGCACGCTTCGTGATACGCAAGTAGCTCGTCCCTGGTTTGCGCAAGTTTTAAACCTTAGATTTCGCACGATGAGTTTGTCCCGGTTCCGTTTGATTACGTTCGATGTACATAATACGCTGCTACAGTTCCGCTCTAGCCCAGGCAAGAAGTATGGTGAAATTGGTGCAATGTTCGGTATAAGCAACAACAACAACCAACTAGTCTCAAACTACGTCCAAAGCTGGCACAAAATGAATCGGCTCCATCCGAACTTTGGACTGAAGACGAAAATTACCTAC AAACAATGGTGGCAGATGATGATAGACGGCATTTTTAATGAAAATGGTACACACAACACGCCGCCAGAGAAGATTGAACAGATGACCGAGCATTTCATGGAGTACTTCAAAACGAGCGTCTTTTGGCAACATTGCTATGGTTCGGTGGACTTTCTGAATTACCTGAAGCTTCAGCGGCATGTGGAGTCCGGTGGCCAGAAAGAACCACCGTTCAAGCTGGGAGTGATCTCAAACTTTGACCCCCGGCTAGACGTATTGTTGCGGAACATGAAAATCAACCACTATTTCGACTTTGTGCTGAACTCGTATGATGTGGGCTATATGAAACCGGCCCCGGAAATATTTGACCGTGCGATGAAGGCAGCCGAGATTAAGGATCTCAAACCACACCAATGTTTACATATTGGGGCGACACCGGCGACCGATTACTTTGGCGCACGAAATGCTGGATGGTACAGTCTGCTGGTGCACGAAAAGTCGGCGGAAGAGTTGACACGCAAATACGGCCAGTTGGTCGAGGACAACCATGTGTTTTCTAGTCTGTTTGATATTCACAAGAAGATATCGAATGATTACATGAGATGGTAAATGATATTAGCTGTGTGTGAGTGAGTGAAAATGTTACACTTTATGAATAAAACTGTTTTCAATTTGAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BX606681 [ GCACGCTTCGTGATACGCAAGTAGCTCGTCCCTGGTTTGCGCAAGTTTTAAACCTTAGATTTCGCACGATGAGTTTGTCCCGGTTCCGTTTGATTACGTTCGATGTACATAATACGCTGCTACAGTTCCGCTCTAGCCCAGGCAAGAAGTATGGTGAAATTGGTGCAATGTTCGGTATAAGCAACAACAACAACCAACTAGTCTCAAACTACGTCCAAAGCTGGCACAAAATGAATCGGCTCCATCCGAACTTTGGACTGAAGACGAAAATTACCTAC AAACAATGGTGGCAGATGATGATAGACGGCATTTTTAATGAAAATGGTACACACAACACGCCGCCAGAGAAGATTGAACAGATGACCGAGCATTTCATGGAGTACTTCAAAACGAGCGTCTTTTGGCAACATTGCTATGGTTCGGTGGACTTTCTGAATTACCTGAAGCTTCAGCGGCATGTGGAGT ]
[+] EMBL BX611658 [ ACGCTTCGTGATACGCAAGTAGCTCGTCCCTGGTTTGCGCAAGTTTTAAACCTTAGATTTCGCACGATGAGTTTGTCCCGGTTCCGTTTGATTACGTTCGATGTACATAATACGCTGCTACAGTTCCGCTCTAGCCCAGGCAAGAAGTATGGTGAAATTGGTGCAATGTTCGGTATAAGCAACAACAACAACCAACTAGTCTCAAACTACGTCCAAAGCTGGCACAAAATGAATCGGCTCCATCCGAACTTTGGACTGAAGACGAAAATTACCTAC AAACAATGGTGGCAGATGATGATAGACGGCATTTTTAATGAAAATGGTACACACAACACGCCGCCAGAGAAGATTGAACAGATGACCGAGCATTTCATGGAGTACTTCAAAACGAGCGTCTTTTGGCAACATTGCTATGGTTCGGTGGACTTTCTGAATTACCTGAAGCTTCAGCGGCATGTGGAGTCCGGTGGCCAGAAAGAACCACCGTTCAAGCTGGGAGTGATCTCAAACTTTGACCCCCGGCTAGACGTATTGTTGCGGAACATGAAAATCAACCACTATTTCGACT ]
[-] EMBL CNS09KXU [ AGTAGCTCGTCCCTGGTTTGCGCAAGTTTTAAACCTTAGATTTCGCACGATGAGTTTGTCCCGGTTCCGTTTGATTACGTTCGATGTACATAATACGCTGCTACAGTTCCGCTCTAGCCCAGGCAAGAAGTATGGTGAAATTGGTGCAATGTTCGGTATAAGCAACAACAACAACCAACTAGTCTCAAACTACGTCCAAAGCTGGCACAAAATGAATCGGCTCCATCCGAACTTTGGACTGAAGACGAAAATTACCTAC AAACAATGGTGGCAGATGATGATAGACGGCATTTTTAATGAAAATGGTACACACAACACGCCGCCAGAGAAGATTGAACAGATGACCGAGCATTTCATGGAGTACTTCAAAACGAGCGTCTTTTGGCAACATTGCTATGGTTCGGTGGACTTTCTGAATTACCTGAAGCTTCAGCGGCATGTGGAGTCCGGTGGCCAGAAAGAACCACCGTTCAAGCTGGGAGTGATCTCAAACTTTGACCCCCGGCTAGACGTATTGTTGCGGAACATGAAAATCAACCACTATTTCGACTTTGTGCTGAACTCGTATGATGTGGGCTATATGAAACCGGCCCCGGAAATATTTGACCGTGCGATGAAGGCAGCCGAGATTAAGGATCTCAAACCACACCAATGTTTACATATTGGGGCGACACCGGCGACCGATTACTTTGGCGCACGAAATGCTGGATGGTACAGTCTGCTGGTGCACGAAAAGTCGGCGGAAGAGTTGACACGCAAATACGGCCAGTTGGTCGAGGACAACCATGTGTTTTCTAGTCTGTTTGATATTCACAAGAAGATATCGAATGATTACATGAGATGGTAAATGATATTAGCTGTGTGTGAGTGAGTGAAAAT TTACACTTTATGAATAAAACTG TTTCAA TTGAAA ]
[-] EMBL BX611657 [ ATTACCTACAAAACAATGGTGGCAGATGATGATAGACGGCATTTTTAATGAAAATGGTACACACAACACGCCGCCAGAGAAGATTGAACAGATGACCGAGCATTTCATGGAGTACTTCAAAACGAGCGTCTTTTGGCAACATTGCTATGGTTCGGTGGACTTTCTGAATTACCTGAAGCTTCAGCGGCATGTGGAGTCCGGTGGCCAGAAAGAACCACCGTTCAAGCTGGGAGTGATCTCAAACTTTGACCCCCGGCTAGACGTATTGTTGCGGAACATGAAAATCAACCACTATTTCGACTTTGTGCTGAACTCGTATGATGTGGGCTATATGAAACCGGCCCCGGAAATATTTGACCGTGCGATGAAGGCAGCCGAGATTAAGGATCTCAAACCACACCAATGTTTACATATTGGGGCGACACCGGCGACCGATTACTTTGGCGCACGAAATGCTGGATGGTACAGTCTGCTGGTGCACGAAAAGTCGGCGGAAGAGTTGACACGCAAATACGGCCAGTTGGTTGAGGACAACCATGTGTTTTCTAGTCTGTTTGATATTCACAAGAAGATATCGAATGATTACATGAGATGGTAAATGATATTAGCTGTGTGTGAGTGAGTGAAAATGTTACACTTTATGAATAAAACTGTT ]
consensusID : consensus_6850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[CGAGGTTAACGCTTCGTGATACGCAAGTAGCTCGTCCCTGGTTTGCGCAAGTTTTAAACCTTAGATTTCGCACGATGAGTTTGTCCCGGTTCCGTTTGATTACGTTCGATGTACATAATACGCTGCTACAGTTCCGCTCTAGCCCAGGCAAGAAGTATGGTGAAATTGGTGCAATGTTCCGGTATAAGCAACCAACAACAACCAACTAGTCTCAAAACTACGTCCAAAGCTTGGCACAAAACTGAATCGGTCCATCCGGAGACTTTTGGACCTCGACNACGCACCGACANACACTTTACCCTACCAAAACACANTTGGTGGGCCAGAATTGACTGAATTAGNANCGGGGCATTTATACANACACTTGGAAAACAATGGGTNACACACAACAAAANAAGCGCGCCGGCCAGCAGCANAAGCACTTTCGCAACCAAGAATTGAACCCGAAAGCCAATTTCACATGGGGAACGGATAACGCTTATTCCAAAAAACAAACCCGGAANGCCCNGTTCTATCAGATTCAGCGAGAGCANAACCCAAAATTATGGGCCNNACATGGNNGAATCANACCAGCGATNNGGNAGACNTATTTATACCCNTGGNACATTTTTAACCCCCNTTGGACAAGAGCCCATTCACAAGNAGCCTGAGGGANCTATGGTTAGGGGAAAGGTATACACGGGTTGGAGCCACAGAACAAGAACAC]
[+] EMBL AL695158 [CGAGGTTAACGCTTCGTGATACGCAAGTAGCTCGTCCCTGGTTTGCGCAAGTTTTAAACCTTAGATTTCGCACGATGAGTTTGTCCCGGTTCCGTTTGATTACGTTCGATGTACATAATACGCTGCTACAGTTCCGCTCTAGCCCAGGCAAGAAGTATGGTGAAATTGGTGCAATGTTCCGGTATAAGCAACCAACAACAACCAACTAGTCTCAAAACTACGTCCAAAGCTTGGCACAAAACTGAATCGGTCCATCCGGAGACTTTTGGACCTCGACNACGCACCGACANACACTTTACCCTACCAAAACACANTTGGTGGGCCAGAATTGACTGAATTAGNANCGGGGCATTTATACANACACTTGGAAAACAATGGGTNACACACAACAAAANAAGCGCGCCGGCCAGCAGCANAAGCACTTTCGCAACCAAGAATTGAACCCGAAAGCCAATTTCACATGGGGAACGGATAACGCTTATTCCAAAAAACAAACCCGGAANGCCCNGTTCTATCAGATTCAGCGAGAGCANAACCCAAAATTATGGGCCNNACATGGNNGAATCANACCAGCGATNNGGNAGACNTATTTATACCCNTGGNACATTTTTAACCCCCNTTGGACAAGAGCCCATTCACAAGNAGCCTGAGGGANCTATGGTTAGGGGAAAGGTATACACGGGTTGGAGCCACAGAACAAGAACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6850#0 GCCTGCGCACTGTTGAACCGCACGCTTCGTGATACGCAAGTAGCTCGTCCCTGGTTTGCG 60
consensus_6850#1 -------------CGAGGTTAACGCTTCGTGATACGCAAGTAGCTCGTCCCTGGTTTGCG 47
** ***************************************
consensus_6850#0 CAAGTTTTAAACCTTAGATTTCGCACGATGAGTTTGTCCCGGTTCCGTTTGATTACGTTC 120
consensus_6850#1 CAAGTTTTAAACCTTAGATTTCGCACGATGAGTTTGTCCCGGTTCCGTTTGATTACGTTC 107
************************************************************
consensus_6850#0 GATGTACATAATACGCTGCTACAGTTCCGCTCTAGCCCAGGCAAGAAGTATGGTGAAATT 180
consensus_6850#1 GATGTACATAATACGCTGCTACAGTTCCGCTCTAGCCCAGGCAAGAAGTATGGTGAAATT 167
************************************************************
consensus_6850#0 GGTGCAATGTTC-GGTATAAGCAAC-AACAACAACCAACTAGTCTCAAA-CTACGTCCAA 237
consensus_6850#1 GGTGCAATGTTCCGGTATAAGCAACCAACAACAACCAACTAGTCTCAAAACTACGTCCAA 227
************ ************ *********************** **********
consensus_6850#0 AGCT-GGCACAAAA-TGAATCGGCTCCATCCGAACTTTGGACTGAAGACGAAAATTACCT 295
consensus_6850#1 AGCTTGGCACAAAACTGAATCGG-TCCATCCGGAG---------------------ACTT 265
**** ********* ******** ******** * ** *
consensus_6850#0 ACAAACAATGGTGGCAGATGATGATAGACGGCATTTTTAATGAAAATGGTACACACAACA 355
consensus_6850#1 TTGGACCTCGACNACGCAC--CGACANACACTTTACCCTACCAAAA-----CACANTTGG 318
** * * * ** * ** * * **** ****
consensus_6850#0 CGCCGCCAGAGAAGATTGAACAGATGACCGAGCATTTCATGGAGTACTTCAAAACGAGCG 415
consensus_6850#1 TGG-GCCAGAATTGACTGAATTAGNANCGGGGCATTTATACANACACTTGGAAAACAATG 377
* ****** ** **** * * ****** **** *** * *
consensus_6850#0 TCTTTTGGCAACATTGCTATGGTTCGGTGGACTTTCTGAATTACCTGAAGCTTCAGCGGC 475
consensus_6850#1 ------GGTNACAC----ACAACAAAANAAGCGCGCCGG-------------CCAGCAGC 414
** *** * * * * **** **
consensus_6850#0 ATGTGGAGTCCGGTGGCCAGAAAGAACCACCGTTCAAGCTGGGAGT-GATCTCAAACTTT 534
consensus_6850#1 ANAAGCACTTTCGCAACCAAGAA---------TTGAACCCGAAAGCCAATTTCACA---T 462
* * * * * *** ** ** ** * * ** ** *** * *
consensus_6850#0 GACCCCCGGCTAGACGTATTGTTGCGGAACATGAAAATCAACCACTATTTCGACTTTGTG 594
consensus_6850#1 GGGGAACGGATA-ACGC-TTATTCCAAAA------AACAAACCCGGAANGCCCNGTTCTA 514
* *** ** *** ** ** * ** ** **** * * ** *
consensus_6850#0 CTGAACTCGTATGATGTGGGCTATATGAAACCGGCCCCGGAAATATTTGACCGTGCGATG 654
consensus_6850#1 TCAGATTCA---------------GCGAGAGCANAACCCAAAATTATGGGCCNNAC-ATG 558
* ** ** * * ** **** * * ** * ***
consensus_6850#0 AAGGCAGCCGAGATTAAGGATCTCAAACCACACCAATGTTTACATATTGGGGCGACACCG 714
consensus_6850#1 GNNGAATC--ANACCAGCGATNNGGNA-------GACNTATTTATACCCNTGGNACATTT 609
* * * * * * *** * * * * *** * ***
consensus_6850#0 GCGACCGATTACTTTGGCGCACGAAATGCTGGATGGTACAGTCTGCTGGTGCACGAAAAG 774
consensus_6850#1 TTAACC---CCCNTTGG---ACAAGA-GCCCATTCACA-AGNAGCCTGAGGGANCTATGG 661
*** * **** ** * * ** * * ** *** * * * *
consensus_6850#0 TCGGCGGAAGAGTTGACACGCAAATACGGCCAGTTGGTCGAGGACAACCATGTGTTTTCT 834
consensus_6850#1 TTAGGGGAAAGGT--ATACACGGGTTGGAGCCACAGAACAAGAACAC------------- 706
* * **** ** * ** * * * * * * ** ***
consensus_6850#0 AGTCTGTTTGATATTCACAAGAAGATATCGAATGATTACATGAGATGGTAAATGATATTA 894
consensus_6850#1 ------------------------------------------------------------
consensus_6850#0 GCTGTGTGTGAGTGAGTGAAAATGTTACACTTTATGAATAAAACTGTTTTCAATTTGAAA 954
consensus_6850#1 ------------------------------------------------------------
consensus_6850#0 AAAAAAAAAAAAAAAAAAAAAA 976
consensus_6850#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||