These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 993 fasta sequence [CCGGAAAAAAAATGGATATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGGGAGAGAAAGAGGAAAAAATAAGAAATGTTACACAAATGTTATGTTTGCGAAAGTTTATGTTTAGTAGCGTAATATTAGTGGTAGTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAGGGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAATTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGACCATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAATAGTGTCTTAAAATATAAAAACAAAGCAGAACACTATAAACAAACCTCCCTCCTCCATTTTCCCTTTCCCATTCTACACTAACCCGCGTGTTTAGGAATTGTAATATCATCCCAAAGGTTTTTTGTTTTAGTAATTGGTAGGACGTTAGCAATAGCTGTGAGACAGGTGCGTAATATGCCGGTGTAATTAGTGTGCGCTGATTAGTATGGTGTGGAGTGGCACTACTGTGGCGGAGAAAAACGATCGTGATCGCATCAGCCCATCCATCGTAGCAATCCATGACACGTTGGCAATCCCTCACCTGGGAAACGG] [+] EMBL BM616709 [CCGGAAAAAAAATGGATATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGGGAGAGAAAGAGGAAAAAATAAGAAATGTTACACAAATGTTATGTTTGCGAAAGTTTATGTTTAGTAGCGTAATATTAGTGGTAGTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAGGGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAATTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGACCATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAATAGTGTCTT ] [+] EMBL BX628490 [ GTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAGGGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAATTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGACCATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAAT ] [+] EMBL BX610666 [ TAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAATAGTGTCTTAAAATATAAAAACAAAGCAGAACACTATAAACAAACCTCCCTCCTCCATTTTCCCTTTCCCATTCTACACTAACCCGCGTGTTTAGGAATTGTAATATCATCCCAAAGGTTTTTTGTTTTAGTAATTGGTAGGACGTTAGCAATAGCTGTGAGACAGGTGCGTAATATGCCGGTGTAATTAGTGTGCGCTGATTAGTATGGTGTGGAGTGGCACTACTGTGGCGGAGAAAAACGATCGTGATCGCATCAGCCCATCCATCGTAGCAATCCATGACACGTTGGCAATCCCTCACCTGGGAAACGG] [+] EMBL BX618078 [ CTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCGGTCCCAAAAAGGAAGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGGCCCACAGCTATGAGAAAACGCGGGAAAACCC ] [+] EMBL BX610667 [ TAGGAATTTTCAAGGAGCCGGTCCCAAAAAGGAGGCCATAGAGTCCAATCCCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCGGGAATACA ] consensusID : consensus_6858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 745 fasta sequence [GCTGCTTATCTCATACAACGACACAAACATAACAGAAAAAAAACTTAACAATGTTTAAAAAGAAACATTGCGAAAGTTACCAAAATTTACATCGCTCGCAAATCCAGCTACTATTAAAATTTAACACCGCTATTTCTCTTTCTCTCTTTCCCCTCCCTCTGCCCGTTATCCGTCCAATGGTCCGCGTTTCTCTTTCTAGCAATGCCCATGGGCCAGATGCCGGTGTTGGAGGTCGATGGTAAGCGTGTGCACCAATCTCTGGCAATGTGCCGGTATGTGGCCAAGCAGATCAATCTGGCCGGTGATAATCCGTTAGAGGCTCTGCAAATCGATGCCATTGTCGATACGATCAATGATTTTCGTCTAAAAATTGCGATTGTCGCCTACGAACCGGACGATATGGTGAAGGAGAAAAAAATGGTCACCCTGAACAACGAGGTGATTCCGTTTTATCTGACTAAGCTGAACGTGATCGCCAAGGAGAACAATGGCCACCTGGTGCTTGGCAATCCGACCTGGGCTGATGTTTATTTTGCTGGTATCCTAGACTATCTAAACTACCTGACCAAGACAAATCTGCTCGAGAACTTCCCGAACTTGCAGGAGGTGGTCCAGAAGGTGCTAGATAATGAGAATGTCAAAGCTTACATTGCTAAGAGACCCATCACCGAAGTTTAGACGGATGGTGTGATTTGCCGAGAAGAGCAACTTTTAAAATGCAATCACCTTGAATATGATTCTTTTT] [+] EMBL BX615317 [GCTGCTTATCTCATACAACGACACAAACATAACAGAAAAAAAACTTAACAATGTTTAAAAAGAAACATTGCGAAAGTTACCAAAATTTACATCGCTCGCAAATCCAGCTACTATTAAAATTTAACACCGCTATTTCTCTTTCTCTCTTTCCCCTCCCTCTGCCCGTTATCCGTCCAATGGTCCGCGTTTCTCTTTCTAGCAATGCCCATGGGCCAGATGCCGGTGTTGGAGGTCGATGGTAAGCGTGTGCACCAATCTCTGGCAATGTGCCGGTATGTGGCCAAGCAGATCAATCTGGCCGGTGATAATCCGTTAGAGGCTCTGCAAATCGATGCCATTGTCGATACGATCAATGATTTTCGTCTAAAAATTGCGATTGTCGCCTACGAACCGGACGATATGGTGAAGGAGAAAAAAATGGTCACCCTGAACAACGAGGTGATTCCGTTTTATCTGACTAAGCTGAACGTGATCGCCAAGGAGAACAATGGCCACCTGGTGCTTGGCAATCCGACCTGGGCTGATGTTTATTTTGCTGGTATCCTAGACTATCTAAACTACCTGACCAAGACAAATCTGCTCGAGAACTTCCCGAACTTGCAGGAGGTGGTCCAGAAGGTGCTAGATAATGAGAATGTCAAAGCTTACATTGCTAAGAGACCCATCACCGAAGTTTAGACGGATGGTGTGATTTGCCGAGAAGAGCAACTTTTAAAATGCAATCACCTTGAATATGATTCTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6858#0 CCGGAAAAAAAATGGATATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 60 consensus_6858#1 ------------------------------------------------------------ consensus_6858#0 GAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGGGAGA 120 consensus_6858#1 ------------------------------------------------------------ consensus_6858#0 GAAAGAGGAAAAAATAAGAAATGTTACACAAATGTTATGTTTGCGAAAGTTTATGTTTAG 180 consensus_6858#1 ------------------------------------------------------------ consensus_6858#0 TAGCGTAATATTAGTGGTAGTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAG 240 consensus_6858#1 ------------------------------GCTGCTTATCTCATACAA-CGACACAAACA 29 *** ** ** * * ** ** *** consensus_6858#0 GGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAA 300 consensus_6858#1 TAACAGAAAAA-AAACTTAACAATGTTTAAAAAGAAACATTGCGAAAGTTACCAAAAT-- 86 ** * ** *** * * **** ** * * ** **** consensus_6858#0 TTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGAC 360 consensus_6858#1 -TTACATCGCTCGCAAAT---CCAGCTACTATTAAAATTTAACACCGCTATTTCTCTTTC 142 * *** * *** * * * * ** ** * * * consensus_6858#0 CATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACAC 420 consensus_6858#1 TCTCTT-TCCCCTCCCTCTGCCCGTTATC--CGTCCAATGGTCCGCGTTTCTCTTTCTAG 199 * ** * * ** * * * * * * * ** * * * * * consensus_6858#0 TGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATG 480 consensus_6858#1 CAATGCCCATGGGC-CAGATGCCGGTGTTGGAGGTCGATGGTAAGCGTGTGCACCAATCT 258 * *** * * * ** * *** * * * ** * * ** consensus_6858#0 AACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAAT 540 consensus_6858#1 CTGGCAATGTGCCGGTATGTGGCCA----AGCA-----GATCAATCTGGCCGGTGATAAT 309 ****** * * *** * **** * * * ** * *** consensus_6858#0 TTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTC 600 consensus_6858#1 CCGTTAGAGGC---TCTGCAAATCGATGCCATTG---TCGATA--CGATCAATGATTTTC 361 ** ** ** *** ******** * * ** * * **** *** consensus_6858#0 ACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACC 660 consensus_6858#1 GTCTAAAAATTGCGATTGTCGCCTACGAACCGGACGATATGGTGAAGGAGAAAAAAATGG 421 * ** * * *** * ** * ** * *** * *** consensus_6858#0 CTGTAATACATAATAAA-CAATAGTGTCTTAAAATATAAAAACAAAGCAGAACACTATAA 719 consensus_6858#1 TCACCCTGAACAACGAGGTGATTCCGTTTTATCTGACTAAGCTGAACGTGATCGCCAAGG 481 * * ** * ** ** *** * ** ** ** * * * consensus_6858#0 ACAAACCTCCCTCCTCCATTTTCCCTTTCCCATTCTACACTAACCCGCGTGTTTAGGAAT 779 consensus_6858#1 AGAACAATGGCCACCTGGTGCTTGGCAATCCGACCTGGGCTGATGTTTATTTTGCTGGTA 541 * ** * * * * * ** ** ** * * ** * consensus_6858#0 TGTAATATCATCCCAAAGGTTTTTTGTTTTAGTAATTGGTAGGACGTTAGCAATAGCTGT 839 consensus_6858#1 TCCTAGACTATCTAAACTACCTGACCAAGACAAATCTGCTCGAGAACTTCCCGAACTTGC 601 * * * *** ** * * ** * * * * * ** consensus_6858#0 GAGACA-GGTGCGTAATATGCCGGTGTAATTAGTGTGCGCTGATTAGTATGGTGTGGAGT 898 consensus_6858#1 AGGAGGTGGTCCAGAAGGTGCTAG-ATAATGAGAATGTCAAAGCTTACATTGCTAAGAGA 660 ** *** * ** *** * **** ** ** * ** * *** consensus_6858#0 GGCACTACTGTGGCGGAGAAAAACGATCGTGATCGCATCAGCCCATCCATCGTAGCAATC 958 consensus_6858#1 CCCATCACCGAAGTTTAGACGGATGGT-GTGATTTGCCGAGAAGAGCAACTTTTAAAATG 719 ** ** * * *** * * * ***** ** * * * * *** consensus_6858#0 CATGACACGTTGGCAATCCCTCACCTGGGAAACGG 993 consensus_6858#1 CA-ATCACCTTGAATATGATTCTTTTT-------- 745 ** *** *** ** ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||