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Anopheles gambiae
cluster # 6858 cluster # 6858       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6858#0 length = 993 sequences # 5  
consensus_6858#1 length = 745 sequences # 1  

consensusID : consensus_6858#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 993
fasta sequence
                              [CCGGAAAAAAAATGGATATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGGGAGAGAAAGAGGAAAAAATAAGAAATGTTACACAAATGTTATGTTTGCGAAAGTTTATGTTTAGTAGCGTAATATTAGTGGTAGTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAGGGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAATTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGACCATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAATAGTGTCTTAAAATATAAAAACAAAGCAGAACACTATAAACAAACCTCCCTCCTCCATTTTCCCTTTCCCATTCTACACTAACCCGCGTGTTTAGGAATTGTAATATCATCCCAAAGGTTTTTTGTTTTAGTAATTGGTAGGACGTTAGCAATAGCTGTGAGACAGGTGCGTAATATGCCGGTGTAATTAGTGTGCGCTGATTAGTATGGTGTGGAGTGGCACTACTGTGGCGGAGAAAAACGATCGTGATCGCATCAGCCCATCCATCGTAGCAATCCATGACACGTTGGCAATCCCTCACCTGGGAAACGG]

[+] EMBL BM616709             [CCGGAAAAAAAATGGATATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGGGAGAGAAAGAGGAAAAAATAAGAAATGTTACACAAATGTTATGTTTGCGAAAGTTTATGTTTAGTAGCGTAATATTAGTGGTAGTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAGGGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAATTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGACCATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAATAGTGTCTT                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX628490             [                                                                                                                                                                                                       GTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAGGGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAATTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGACCATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAAT                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX610666             [                                                                                                                                                                                                                                                                                                                                                                                                                    TAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAATAGTGTCTTAAAATATAAAAACAAAGCAGAACACTATAAACAAACCTCCCTCCTCCATTTTCCCTTTCCCATTCTACACTAACCCGCGTGTTTAGGAATTGTAATATCATCCCAAAGGTTTTTTGTTTTAGTAATTGGTAGGACGTTAGCAATAGCTGTGAGACAGGTGCGTAATATGCCGGTGTAATTAGTGTGCGCTGATTAGTATGGTGTGGAGTGGCACTACTGTGGCGGAGAAAAACGATCGTGATCGCATCAGCCCATCCATCGTAGCAATCCATGACACGTTGGCAATCCCTCACCTGGGAAACGG]
[+] EMBL BX618078             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCGGTCCCAAAAAGGAAGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGGCCCACAGCTATGAGAAAACGCGGGAAAACCC                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX610667             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TAGGAATTTTCAAGGAGCCGGTCCCAAAAAGGAGGCCATAGAGTCCAATCCCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCGGGAATACA                                                                                                                                                                                                                                                                                                                                   ]


>consensus_6858#0 CCGGAAAAAAAATGGATATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGGGAGA GAAAGAGGAAAAAATAAGAAATGTTACACAAATGTTATGTTTGCGAAAGTTTATGTTTAG TAGCGTAATATTAGTGGTAGTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAG GGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAA TTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGAC CATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACAC TGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATG AACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAAT TTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTC ACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACC CTGTAATACATAATAAACAATAGTGTCTTAAAATATAAAAACAAAGCAGAACACTATAAA CAAACCTCCCTCCTCCATTTTCCCTTTCCCATTCTACACTAACCCGCGTGTTTAGGAATT GTAATATCATCCCAAAGGTTTTTTGTTTTAGTAATTGGTAGGACGTTAGCAATAGCTGTG AGACAGGTGCGTAATATGCCGGTGTAATTAGTGTGCGCTGATTAGTATGGTGTGGAGTGG CACTACTGTGGCGGAGAAAAACGATCGTGATCGCATCAGCCCATCCATCGTAGCAATCCA TGACACGTTGGCAATCCCTCACCTGGGAAACGG



consensusID : consensus_6858#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 745
fasta sequence
                              [GCTGCTTATCTCATACAACGACACAAACATAACAGAAAAAAAACTTAACAATGTTTAAAAAGAAACATTGCGAAAGTTACCAAAATTTACATCGCTCGCAAATCCAGCTACTATTAAAATTTAACACCGCTATTTCTCTTTCTCTCTTTCCCCTCCCTCTGCCCGTTATCCGTCCAATGGTCCGCGTTTCTCTTTCTAGCAATGCCCATGGGCCAGATGCCGGTGTTGGAGGTCGATGGTAAGCGTGTGCACCAATCTCTGGCAATGTGCCGGTATGTGGCCAAGCAGATCAATCTGGCCGGTGATAATCCGTTAGAGGCTCTGCAAATCGATGCCATTGTCGATACGATCAATGATTTTCGTCTAAAAATTGCGATTGTCGCCTACGAACCGGACGATATGGTGAAGGAGAAAAAAATGGTCACCCTGAACAACGAGGTGATTCCGTTTTATCTGACTAAGCTGAACGTGATCGCCAAGGAGAACAATGGCCACCTGGTGCTTGGCAATCCGACCTGGGCTGATGTTTATTTTGCTGGTATCCTAGACTATCTAAACTACCTGACCAAGACAAATCTGCTCGAGAACTTCCCGAACTTGCAGGAGGTGGTCCAGAAGGTGCTAGATAATGAGAATGTCAAAGCTTACATTGCTAAGAGACCCATCACCGAAGTTTAGACGGATGGTGTGATTTGCCGAGAAGAGCAACTTTTAAAATGCAATCACCTTGAATATGATTCTTTTT]

[+] EMBL BX615317             [GCTGCTTATCTCATACAACGACACAAACATAACAGAAAAAAAACTTAACAATGTTTAAAAAGAAACATTGCGAAAGTTACCAAAATTTACATCGCTCGCAAATCCAGCTACTATTAAAATTTAACACCGCTATTTCTCTTTCTCTCTTTCCCCTCCCTCTGCCCGTTATCCGTCCAATGGTCCGCGTTTCTCTTTCTAGCAATGCCCATGGGCCAGATGCCGGTGTTGGAGGTCGATGGTAAGCGTGTGCACCAATCTCTGGCAATGTGCCGGTATGTGGCCAAGCAGATCAATCTGGCCGGTGATAATCCGTTAGAGGCTCTGCAAATCGATGCCATTGTCGATACGATCAATGATTTTCGTCTAAAAATTGCGATTGTCGCCTACGAACCGGACGATATGGTGAAGGAGAAAAAAATGGTCACCCTGAACAACGAGGTGATTCCGTTTTATCTGACTAAGCTGAACGTGATCGCCAAGGAGAACAATGGCCACCTGGTGCTTGGCAATCCGACCTGGGCTGATGTTTATTTTGCTGGTATCCTAGACTATCTAAACTACCTGACCAAGACAAATCTGCTCGAGAACTTCCCGAACTTGCAGGAGGTGGTCCAGAAGGTGCTAGATAATGAGAATGTCAAAGCTTACATTGCTAAGAGACCCATCACCGAAGTTTAGACGGATGGTGTGATTTGCCGAGAAGAGCAACTTTTAAAATGCAATCACCTTGAATATGATTCTTTTT]


>consensus_6858#1 GCTGCTTATCTCATACAACGACACAAACATAACAGAAAAAAAACTTAACAATGTTTAAAA AGAAACATTGCGAAAGTTACCAAAATTTACATCGCTCGCAAATCCAGCTACTATTAAAAT TTAACACCGCTATTTCTCTTTCTCTCTTTCCCCTCCCTCTGCCCGTTATCCGTCCAATGG TCCGCGTTTCTCTTTCTAGCAATGCCCATGGGCCAGATGCCGGTGTTGGAGGTCGATGGT AAGCGTGTGCACCAATCTCTGGCAATGTGCCGGTATGTGGCCAAGCAGATCAATCTGGCC GGTGATAATCCGTTAGAGGCTCTGCAAATCGATGCCATTGTCGATACGATCAATGATTTT CGTCTAAAAATTGCGATTGTCGCCTACGAACCGGACGATATGGTGAAGGAGAAAAAAATG GTCACCCTGAACAACGAGGTGATTCCGTTTTATCTGACTAAGCTGAACGTGATCGCCAAG GAGAACAATGGCCACCTGGTGCTTGGCAATCCGACCTGGGCTGATGTTTATTTTGCTGGT ATCCTAGACTATCTAAACTACCTGACCAAGACAAATCTGCTCGAGAACTTCCCGAACTTG CAGGAGGTGGTCCAGAAGGTGCTAGATAATGAGAATGTCAAAGCTTACATTGCTAAGAGA CCCATCACCGAAGTTTAGACGGATGGTGTGATTTGCCGAGAAGAGCAACTTTTAAAATGC AATCACCTTGAATATGATTCTTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6858#0      CCGGAAAAAAAATGGATATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 60
consensus_6858#1      ------------------------------------------------------------
                                                                                  

consensus_6858#0      GAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGGGAGA 120
consensus_6858#1      ------------------------------------------------------------
                                                                                  

consensus_6858#0      GAAAGAGGAAAAAATAAGAAATGTTACACAAATGTTATGTTTGCGAAAGTTTATGTTTAG 180
consensus_6858#1      ------------------------------------------------------------
                                                                                  

consensus_6858#0      TAGCGTAATATTAGTGGTAGTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAG 240
consensus_6858#1      ------------------------------GCTGCTTATCTCATACAA-CGACACAAACA 29
                                                    *** ** **   * * **   **  ***  

consensus_6858#0      GGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAA 300
consensus_6858#1      TAACAGAAAAA-AAACTTAACAATGTTTAAAAAGAAACATTGCGAAAGTTACCAAAAT-- 86
                        **  * **  *** *    * ****  **     * *            ** ****  

consensus_6858#0      TTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGAC 360
consensus_6858#1      -TTACATCGCTCGCAAAT---CCAGCTACTATTAAAATTTAACACCGCTATTTCTCTTTC 142
                       * ***   *   *** *   *  *     *   **    **  *          *   *

consensus_6858#0      CATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACAC 420
consensus_6858#1      TCTCTT-TCCCCTCCCTCTGCCCGTTATC--CGTCCAATGGTCCGCGTTTCTCTTTCTAG 199
                        * ** * * **    * *   *  * *   *  *   **  *  *     *  *  * 

consensus_6858#0      TGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATG 480
consensus_6858#1      CAATGCCCATGGGC-CAGATGCCGGTGTTGGAGGTCGATGGTAAGCGTGTGCACCAATCT 258
                         *  *** * *  *  **  * ***  * *  *   **         * *   **   

consensus_6858#0      AACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAAT 540
consensus_6858#1      CTGGCAATGTGCCGGTATGTGGCCA----AGCA-----GATCAATCTGGCCGGTGATAAT 309
                          ******    * *  *** *     ****     * *  *     **  *   ***

consensus_6858#0      TTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTC 600
consensus_6858#1      CCGTTAGAGGC---TCTGCAAATCGATGCCATTG---TCGATA--CGATCAATGATTTTC 361
                           **  **   **   ***  ******** *    * **   * *   ****  ***

consensus_6858#0      ACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACC 660
consensus_6858#1      GTCTAAAAATTGCGATTGTCGCCTACGAACCGGACGATATGGTGAAGGAGAAAAAAATGG 421
                         *   **  *  *  ***    * **  *  **      * ***   *    ***   

consensus_6858#0      CTGTAATACATAATAAA-CAATAGTGTCTTAAAATATAAAAACAAAGCAGAACACTATAA 719
consensus_6858#1      TCACCCTGAACAACGAGGTGATTCCGTTTTATCTGACTAAGCTGAACGTGATCGCCAAGG 481
                            *  * **  *    **   ** ***    *  **    **   ** * * *   

consensus_6858#0      ACAAACCTCCCTCCTCCATTTTCCCTTTCCCATTCTACACTAACCCGCGTGTTTAGGAAT 779
consensus_6858#1      AGAACAATGGCCACCTGGTGCTTGGCAATCCGACCTGGGCTGATGTTTATTTTGCTGGTA 541
                      * **   *  *  *    *  *       **   **   ** *      * **   *   

consensus_6858#0      TGTAATATCATCCCAAAGGTTTTTTGTTTTAGTAATTGGTAGGACGTTAGCAATAGCTGT 839
consensus_6858#1      TCCTAGACTATCTAAACTACCTGACCAAGACAAATCTGCTCGAGAACTTCCCGAACTTGC 601
                      *   * *  ***  **     *           *  ** * *     *  *   *  ** 

consensus_6858#0      GAGACA-GGTGCGTAATATGCCGGTGTAATTAGTGTGCGCTGATTAGTATGGTGTGGAGT 898
consensus_6858#1      AGGAGGTGGTCCAGAAGGTGCTAG-ATAATGAGAATGTCAAAGCTTACATTGCTAAGAGA 660
                        **   *** *  **  ***  *  **** **  **       *   ** *    *** 

consensus_6858#0      GGCACTACTGTGGCGGAGAAAAACGATCGTGATCGCATCAGCCCATCCATCGTAGCAATC 958
consensus_6858#1      CCCATCACCGAAGTTTAGACGGATGGT-GTGATTTGCCGAGAAGAGCAACTTTTAAAATG 719
                        **  ** *  *   ***   * * * *****      **   * * *   *   *** 

consensus_6858#0      CATGACACGTTGGCAATCCCTCACCTGGGAAACGG 993
consensus_6858#1      CA-ATCACCTTGAATATGATTCTTTTT-------- 745
                      **   *** ***   **   **   *         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)