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Anopheles gambiae
cluster # 6865 cluster # 6865       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6865#0 length = 786 sequences # 3  
consensus_6865#1 length = 554 sequences # 1  
consensus_6865#2 length = 353 sequences # 2  

consensusID : consensus_6865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 786
fasta sequence
                              [GACACATGCACACATTCTGATACTATAATACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGATATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGCAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAGCCGTACTACAGGCTGGACCCAACTAACCCGATTGGAGAAAAGAAATACTTAAGACCACTACAGATGAGCGATAAAAAGATGGGCGTATCATATTTCGACTGCAAAGAAGCTACGACCCTTTTCGGCGTGATG-TTTTTTTTACATGAAAATCCAATATGAAGGCGGGTCGTTTGGGAGGATTACAACGTACATAAACAAAGAAAGACAGCTAGAGGAACGTCAGACATGGACGGGATCGAAAAACGCGACCCAGACGAAATGTATTCTGCTGCTTACCAATACATC-ATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAG-AAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGATAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATT]

[+] EMBL BX618573             [GACACATGCACACATTCTGATACTATAATACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGATATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGCAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAGCCGTACTACAGGCTGGACCCAACTAACCCGATTGGAGAAAAGAAATACTTAAGACCACTACAGATGAGCGATAAAAAGATGGGCGTATCATATTTCGACTGCAAAGAAGCTACGACCCTTTTCGGCGTGATG TTTTTTTTACATGAAAATCCAATATGAAGGCGGGTCGTTTGGGAGGATTACAACGTACATAAACAAAGAAAGACAGCTAGAGGAACGTCAGACATGGACGGGATCGAAAAACGCGACCCAGACGAAATGTATTCTGCTGCTTACCAATACATC ATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAG AAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGG                                                                                                                         ]
[+] EMBL BX612240             [                                                                    TTGGGTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAAGGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGGAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX612290             [                                                                                           GAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGCAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAGCCGTACTACAGGCTGGACCCAACTAACCCGATTGGAGAAAAGAAATACTTAAGACCACTACAGATGAGCGATAAAAAGATGGGCGTATCATATTTCGACTGCAAAGAAGCTACGACCCTTTTCGGCGTGATGTTTTTTTTTACATGAAAATCCAATATGAAGGCGGGTCGTTTGGGAGGATTACAACGTACATAAACAAAGAAAGACAGCTAGAGGAACGTCAGACATGGACGGGATCGAAAAACGCGACCCAGACGAAATGTATTCTGCTGCTTACCAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGATAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATT]


>consensus_6865#0 GACACATGCACACATTCTGATACTATAATACTAAAAAAAAAAGAGTTATCATTAATGCTG AGATCACATTGGTTGATATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATC TAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAG ACAAAAGGCAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAGC CGTACTACAGGCTGGACCCAACTAACCCGATTGGAGAAAAGAAATACTTAAGACCACTAC AGATGAGCGATAAAAAGATGGGCGTATCATATTTCGACTGCAAAGAAGCTACGACCCTTT TCGGCGTGATGTTTTTTTTACATGAAAATCCAATATGAAGGCGGGTCGTTTGGGAGGATT ACAACGTACATAAACAAAGAAAGACAGCTAGAGGAACGTCAGACATGGACGGGATCGAAA AACGCGACCCAGACGAAATGTATTCTGCTGCTTACCAATACATCATTGTACGAATAATAT GCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAA TGTATTGCTTACGCGTCTGAAGAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGA GGGGGATAGGAGCATAACAGAGCATGATAACGAGCAGAAGCTGAAGAATTTCCACATTAC CAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAA CCTATT



consensusID : consensus_6865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence
                              [ATCGCGCACGAGGTTGTACTATAAGTACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTNTGAAAGTAAACAAAGAGAAGAAATAATAAAGACAAGAGGCAAGACAACAAGAACAAATACTATGTACTCAGTACATACATACACAGTAAAGCAGCCGTACTACAGGCTGGACCCGAACGTAACCCGAATTGGAGAAAGAGAAAGTACGTTAAGACCACTAGCCAGATGAGCGAATAACAAAGACTGGGCGTATCATATTTCGACTGCAAAGGAAGCTAGCGACCCTTTGTCGGCGTGATCGTGAGCTGTNTACATGAAGACATCCAATATGAAGGCGGGTCGCTCNCTCGGGAAGGATTACAGACGTACAGTGAAGCACAGTGAACAGACAGCGTCGAGGAACCGTCACGACATGGCACGGGATCCGACAGAAAACGCGAGCCCAGACCGAACCTGGGAAGTNCTG]

[+] EMBL BX469411             [ATCGCGCACGAGGTTGTACTATAAGTACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTNTGAAAGTAAACAAAGAGAAGAAATAATAAAGACAAGAGGCAAGACAACAAGAACAAATACTATGTACTCAGTACATACATACACAGTAAAGCAGCCGTACTACAGGCTGGACCCGAACGTAACCCGAATTGGAGAAAGAGAAAGTACGTTAAGACCACTAGCCAGATGAGCGAATAACAAAGACTGGGCGTATCATATTTCGACTGCAAAGGAAGCTAGCGACCCTTTGTCGGCGTGATCGTGAGCTGTNTACATGAAGACATCCAATATGAAGGCGGGTCGCTCNCTCGGGAAGGATTACAGACGTACAGTGAAGCACAGTGAACAGACAGCGTCGAGGAACCGTCACGACATGGCACGGGATCCGACAGAAAACGCGAGCCCAGACCGAACCTGGGAAGTNCTG]


>consensus_6865#1 ATCGCGCACGAGGTTGTACTATAAGTACTAAAAAAAAAAGAGTTATCATTAATGCTGAGA TCACATTGGTTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAG TCAGTTAATTGAATGTTTCATCAGTTTNTGAAAGTAAACAAAGAGAAGAAATAATAAAGA CAAGAGGCAAGACAACAAGAACAAATACTATGTACTCAGTACATACATACACAGTAAAGC AGCCGTACTACAGGCTGGACCCGAACGTAACCCGAATTGGAGAAAGAGAAAGTACGTTAA GACCACTAGCCAGATGAGCGAATAACAAAGACTGGGCGTATCATATTTCGACTGCAAAGG AAGCTAGCGACCCTTTGTCGGCGTGATCGTGAGCTGTNTACATGAAGACATCCAATATGA AGGCGGGTCGCTCNCTCGGGAAGGATTACAGACGTACAGTGAAGCACAGTGAACAGACAG CGTCGAGGAACCGTCACGACATGGCACGGGATCCGACAGAAAACGCGAGCCCAGACCGAA CCTGGGAAGTNCTG



consensusID : consensus_6865#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 353
fasta sequence
                              [CAATTGATGTATTGGTAAGCAGCAGAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGAGAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATTCAATAAAAACTATAAA]

[+] EMBL BX612079             [CAATTGATGTATTGGTAAGCAGCAGAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGAGAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATTCAATAAAAACTATAAA]
[+] EMBL BX611829             [  ATTGATGTATTGGTAAGCAGCAGAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGAGAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATTCAATAAAAACTATAAA]


>consensus_6865#2 CAATTGATGTATTGGTAAGCAGCAGAATACATCAATTGTACGAATAATATGCACCACTGT CATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTT ACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAG GAGCATAACAGAGCATGAGAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAAT TTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATTATT ATGATGTATGGTGAAATCAATAAAAATGAATAAAATTCAATAAAAACTATAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6865#0      GACACATG-CACACATTCTGATACTATAA-TACTAAAAAAAAAAGAGTTATCATTAATGC 58
consensus_6865#1      ----ATCG-CGCACGAGGTTGTACTATAAGTACTAAAAAAAAAAGAGTTATCATTAATGC 55
consensus_6865#2      --CAATTGATGTATTGGTAAGCAGCAGAA-TACATCAATTGTACGAATAATATGCACCAC 57
                             *    *         *  * ** ***   **    * ** * **    *   *

consensus_6865#0      TGAGATCACATTGGTTGATATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCA 118
consensus_6865#1      TGAGATCACATTGGTTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCA 115
consensus_6865#2      TGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTG 117
                      **  *** ** **    * **    *     ****  * *   *   *      *  *  

consensus_6865#0      TCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAA--AGAAATAAT 176
consensus_6865#1      TCTAGTCAGTTAATTGAATGTTTCATCAGTTTNTGAAAGTAAACAAAGAGAAGAAATAAT 175
consensus_6865#2      CTTACGCGTCTGAA-GAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGG 176
                        **  *   * *  ***   * * ** ***  * *    * * * * *     *     

consensus_6865#0      AAAGACAAAAGGCAA-ACAACAA-AACAAATACTATGTACTCA-TACATACATACACA-T 232
consensus_6865#1      AAAGACAAGAGGCAAGACAACAAGAACAAATACTATGTACTCAGTACATACATACACAGT 235
consensus_6865#2      ATAGGAGCATAACAGAGCA-TGAGAACGAGCAGAAGCTGAAGAATTTCCACAT---TACC 232
                      * **        **   **   * *** *  *  *  *    * *    ****    *  

consensus_6865#0      AAAGCAGCCGTACTACAGGCTGGACCCAAC--TAACCCGA-TTGGAGAAAAGAAA--TAC 287
consensus_6865#1      AAAGCAGCCGTACTACAGGCTGGACCCGAACGTAACCCGAATTGGAGAAAGAGAAAGTAC 295
consensus_6865#2      AAACCAATTTAACGATA--CAAAAACAGAAAACAAAACAA---AGAGACAAACAAA--AC 285
                      *** **     ** * *  *   * *  *    **  * *    **** *   **   **

consensus_6865#0      -TTAAGACCACTA--CAGATGAGCGA-TAA-AAAGA-TGGGCGTATCATATTTCGACTGC 341
consensus_6865#1      GTTAAGACCACTAGCCAGATGAGCGAATAACAAAGACTGGGCGTATCATATTTCGACTGC 355
consensus_6865#2      TATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATT-------C 338
                        * *  * * **    ****   *   **   *        * ** * ***       *

consensus_6865#0      AAAG-AAGCTA-CGACCCTTT-TCGGCGTGATGTT---TTTTTTACATGAAAA--TCCAA 393
consensus_6865#1      AAAGGAAGCTAGCGACCCTTTGTCGGCGTGATCGTGAGCTGTNTACATGAAGACATCCAA 415
consensus_6865#2      AATAAAAACTATAAA--------------------------------------------- 353
                      **   ** ***   *                                             

consensus_6865#0      TATGAAGGCGGGTCGTTTG-----GGAGGATTACA-ACGTACAT--AAACAAAG---AAA 442
consensus_6865#1      TATGAAGGCGGGTCGCTCNCTCGGGAAGGATTACAGACGTACAGTGAAGCACAGTGAACA 475
consensus_6865#2      ------------------------------------------------------------
                                                                                  

consensus_6865#0      GACAGC-TAGAGGAAC-GTCA-GACATGG-ACGGGATCGAAAAACGCGACCCAGACGAAA 498
consensus_6865#1      GACAGCGTCGAGGAACCGTCACGACATGGCACGGGATCCGACAGAAAACGCGAGCCCAGA 535
consensus_6865#2      ------------------------------------------------------------
                                                                                  

consensus_6865#0      TGTATTCTGCTGCTTACCAATACATCATTGTACGAATAATATGCACCACTGTCATCTCAA 558
consensus_6865#1      CCGAACCTGGGAAGTNCTG----------------------------------------- 554
consensus_6865#2      ------------------------------------------------------------
                                                                                  

consensus_6865#0      TGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCT 618
consensus_6865#1      ------------------------------------------------------------
consensus_6865#2      ------------------------------------------------------------
                                                                                  

consensus_6865#0      GAAGAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAAC 678
consensus_6865#1      ------------------------------------------------------------
consensus_6865#2      ------------------------------------------------------------
                                                                                  

consensus_6865#0      AGAGCATGATAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATA 738
consensus_6865#1      ------------------------------------------------------------
consensus_6865#2      ------------------------------------------------------------
                                                                                  

consensus_6865#0      CAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATT 786
consensus_6865#1      ------------------------------------------------
consensus_6865#2      ------------------------------------------------
                                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)