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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 786 fasta sequence
[GACACATGCACACATTCTGATACTATAATACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGATATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGCAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAGCCGTACTACAGGCTGGACCCAACTAACCCGATTGGAGAAAAGAAATACTTAAGACCACTACAGATGAGCGATAAAAAGATGGGCGTATCATATTTCGACTGCAAAGAAGCTACGACCCTTTTCGGCGTGATG-TTTTTTTTACATGAAAATCCAATATGAAGGCGGGTCGTTTGGGAGGATTACAACGTACATAAACAAAGAAAGACAGCTAGAGGAACGTCAGACATGGACGGGATCGAAAAACGCGACCCAGACGAAATGTATTCTGCTGCTTACCAATACATC-ATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAG-AAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGATAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATT]
[+] EMBL BX618573 [GACACATGCACACATTCTGATACTATAATACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGATATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGCAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAGCCGTACTACAGGCTGGACCCAACTAACCCGATTGGAGAAAAGAAATACTTAAGACCACTACAGATGAGCGATAAAAAGATGGGCGTATCATATTTCGACTGCAAAGAAGCTACGACCCTTTTCGGCGTGATG TTTTTTTTACATGAAAATCCAATATGAAGGCGGGTCGTTTGGGAGGATTACAACGTACATAAACAAAGAAAGACAGCTAGAGGAACGTCAGACATGGACGGGATCGAAAAACGCGACCCAGACGAAATGTATTCTGCTGCTTACCAATACATC ATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAG AAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGG ]
[+] EMBL BX612240 [ TTGGGTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAAGGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGGAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAG ]
[+] EMBL BX612290 [ GAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGCAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAGCCGTACTACAGGCTGGACCCAACTAACCCGATTGGAGAAAAGAAATACTTAAGACCACTACAGATGAGCGATAAAAAGATGGGCGTATCATATTTCGACTGCAAAGAAGCTACGACCCTTTTCGGCGTGATGTTTTTTTTTACATGAAAATCCAATATGAAGGCGGGTCGTTTGGGAGGATTACAACGTACATAAACAAAGAAAGACAGCTAGAGGAACGTCAGACATGGACGGGATCGAAAAACGCGACCCAGACGAAATGTATTCTGCTGCTTACCAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGATAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATT]
consensusID : consensus_6865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[ATCGCGCACGAGGTTGTACTATAAGTACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTNTGAAAGTAAACAAAGAGAAGAAATAATAAAGACAAGAGGCAAGACAACAAGAACAAATACTATGTACTCAGTACATACATACACAGTAAAGCAGCCGTACTACAGGCTGGACCCGAACGTAACCCGAATTGGAGAAAGAGAAAGTACGTTAAGACCACTAGCCAGATGAGCGAATAACAAAGACTGGGCGTATCATATTTCGACTGCAAAGGAAGCTAGCGACCCTTTGTCGGCGTGATCGTGAGCTGTNTACATGAAGACATCCAATATGAAGGCGGGTCGCTCNCTCGGGAAGGATTACAGACGTACAGTGAAGCACAGTGAACAGACAGCGTCGAGGAACCGTCACGACATGGCACGGGATCCGACAGAAAACGCGAGCCCAGACCGAACCTGGGAAGTNCTG]
[+] EMBL BX469411 [ATCGCGCACGAGGTTGTACTATAAGTACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTNTGAAAGTAAACAAAGAGAAGAAATAATAAAGACAAGAGGCAAGACAACAAGAACAAATACTATGTACTCAGTACATACATACACAGTAAAGCAGCCGTACTACAGGCTGGACCCGAACGTAACCCGAATTGGAGAAAGAGAAAGTACGTTAAGACCACTAGCCAGATGAGCGAATAACAAAGACTGGGCGTATCATATTTCGACTGCAAAGGAAGCTAGCGACCCTTTGTCGGCGTGATCGTGAGCTGTNTACATGAAGACATCCAATATGAAGGCGGGTCGCTCNCTCGGGAAGGATTACAGACGTACAGTGAAGCACAGTGAACAGACAGCGTCGAGGAACCGTCACGACATGGCACGGGATCCGACAGAAAACGCGAGCCCAGACCGAACCTGGGAAGTNCTG]
consensusID : consensus_6865#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 353 fasta sequence
[CAATTGATGTATTGGTAAGCAGCAGAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGAGAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATTCAATAAAAACTATAAA]
[+] EMBL BX612079 [CAATTGATGTATTGGTAAGCAGCAGAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGAGAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATTCAATAAAAACTATAAA]
[+] EMBL BX611829 [ ATTGATGTATTGGTAAGCAGCAGAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGAGAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATTCAATAAAAACTATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6865#0 GACACATG-CACACATTCTGATACTATAA-TACTAAAAAAAAAAGAGTTATCATTAATGC 58
consensus_6865#1 ----ATCG-CGCACGAGGTTGTACTATAAGTACTAAAAAAAAAAGAGTTATCATTAATGC 55
consensus_6865#2 --CAATTGATGTATTGGTAAGCAGCAGAA-TACATCAATTGTACGAATAATATGCACCAC 57
* * * * ** *** ** * ** * ** * *
consensus_6865#0 TGAGATCACATTGGTTGATATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCA 118
consensus_6865#1 TGAGATCACATTGGTTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCA 115
consensus_6865#2 TGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTG 117
** *** ** ** * ** * **** * * * * * *
consensus_6865#0 TCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAA--AGAAATAAT 176
consensus_6865#1 TCTAGTCAGTTAATTGAATGTTTCATCAGTTTNTGAAAGTAAACAAAGAGAAGAAATAAT 175
consensus_6865#2 CTTACGCGTCTGAA-GAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGG 176
** * * * *** * * ** *** * * * * * * * *
consensus_6865#0 AAAGACAAAAGGCAA-ACAACAA-AACAAATACTATGTACTCA-TACATACATACACA-T 232
consensus_6865#1 AAAGACAAGAGGCAAGACAACAAGAACAAATACTATGTACTCAGTACATACATACACAGT 235
consensus_6865#2 ATAGGAGCATAACAGAGCA-TGAGAACGAGCAGAAGCTGAAGAATTTCCACAT---TACC 232
* ** ** ** * *** * * * * * * **** *
consensus_6865#0 AAAGCAGCCGTACTACAGGCTGGACCCAAC--TAACCCGA-TTGGAGAAAAGAAA--TAC 287
consensus_6865#1 AAAGCAGCCGTACTACAGGCTGGACCCGAACGTAACCCGAATTGGAGAAAGAGAAAGTAC 295
consensus_6865#2 AAACCAATTTAACGATA--CAAAAACAGAAAACAAAACAA---AGAGACAAACAAA--AC 285
*** ** ** * * * * * * ** * * **** * ** **
consensus_6865#0 -TTAAGACCACTA--CAGATGAGCGA-TAA-AAAGA-TGGGCGTATCATATTTCGACTGC 341
consensus_6865#1 GTTAAGACCACTAGCCAGATGAGCGAATAACAAAGACTGGGCGTATCATATTTCGACTGC 355
consensus_6865#2 TATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATT-------C 338
* * * * ** **** * ** * * ** * *** *
consensus_6865#0 AAAG-AAGCTA-CGACCCTTT-TCGGCGTGATGTT---TTTTTTACATGAAAA--TCCAA 393
consensus_6865#1 AAAGGAAGCTAGCGACCCTTTGTCGGCGTGATCGTGAGCTGTNTACATGAAGACATCCAA 415
consensus_6865#2 AATAAAAACTATAAA--------------------------------------------- 353
** ** *** *
consensus_6865#0 TATGAAGGCGGGTCGTTTG-----GGAGGATTACA-ACGTACAT--AAACAAAG---AAA 442
consensus_6865#1 TATGAAGGCGGGTCGCTCNCTCGGGAAGGATTACAGACGTACAGTGAAGCACAGTGAACA 475
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 GACAGC-TAGAGGAAC-GTCA-GACATGG-ACGGGATCGAAAAACGCGACCCAGACGAAA 498
consensus_6865#1 GACAGCGTCGAGGAACCGTCACGACATGGCACGGGATCCGACAGAAAACGCGAGCCCAGA 535
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 TGTATTCTGCTGCTTACCAATACATCATTGTACGAATAATATGCACCACTGTCATCTCAA 558
consensus_6865#1 CCGAACCTGGGAAGTNCTG----------------------------------------- 554
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 TGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCT 618
consensus_6865#1 ------------------------------------------------------------
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 GAAGAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAAC 678
consensus_6865#1 ------------------------------------------------------------
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 AGAGCATGATAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATA 738
consensus_6865#1 ------------------------------------------------------------
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 CAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATT 786
consensus_6865#1 ------------------------------------------------
consensus_6865#2 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||