These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1019 fasta sequence [CACCAAGAACTGTTGGCCTACTGGCTGGGGAGACATTGGCCGTAGCATCCAAGCTGGAGGAGCAGCTGTATCCGCTCTTCAGCACCGCCCTGGACAATCCAGCCGATCTGATCGAGTTTATCGGCCGCAAACGTACCCAGCTGCAGCAGGATGTGCAGGTCGCTGAAGCCGATCTGACCCAGCGCTTCGACACGATCGCACAGCTGGAGGCGGCCGGTGCCGACCCCGGCACAGAACAGGACATGGTGGCGGTGAAGAACAACCTGAACTCAATCAAGACCAAGCTCCACACGCTCGGGGCCGACTTTGGCGAGCTGTCGGACGCGACCGAACACTTCCTGCGCTCGATCCTGCAGTGCCGGGACAGCATCCGGGAGTACTTCGGCACCAAGCAAACCGTGACCGGTCCGGGCAGTGTGGAAGCGATCGCGGAGGGCTACGAGCAGTTCAAGCAGGCCACGATGGAGTACTTCCGCGGGTTGCTGCAGCAGAGCGAGCAGATCATCGAGCGGGTGAAGGCGCTGGAACCGCCCGGAGCCCGCGAGCTCGACACGGACAAGATCATCACGCTGCTGGAGAATCTGCGGACGTACTTCGAGTCGCAGACCGAATCGGAGAACTGTGAGCTGAAGAAGCAGCACAGTGTGCTGGCGTTCGACCGTGAGCTCGGGGAGGTGCGGGCTGCGATTCGGGCGGAGGCTGAGCGGTTGGACCGGACCCGTGGACAGTACGGGGAGAGTGTGGCCGAGGCTCAGTCCGTCCGGGTCGCTTTCGAGGAGCGGGCAACAATACTGCAGGATCTTGAGCGTCGTATCGATGCATTTATTAGCTCTGGAGCGGAGCTCGT-ACGCCAGTACCCCGAGACAAGCCCTTACATCGAGTCGGAAACGCACAAGATACGCAACGAGTGGACGGTACTT-CTGCGCAAGCT-CGAGGAGCACCGCCAGCTTCACACCATTGCGATCGAGTACTTCGAGCTGATCACCATGACCTGGGTGGATGGTCATAGGGGTTTCCTG] [-] EMBL CNS09BYA [CACCAAGAACTGTTGGCCTACTGGCTGGGGAGACATTGGCCGTAGCATCCAAGCTGGAGGAGCAGCTGTATCCGCTCTTCAGCACCGCCCTGGACAATCCAGCCGATCTGATCGAGTTTATCGGCCGCAAACGTACCCAGCTGCAGCAGGATGTGCAGGTCGCTGAAGCCGATCTGACCCAGCGCTTCGACACGATCGCACAGCTGGAGGCGGCCGGTGCCGACCCCGGCACAGAACAGGACATGGTGGCGGTGAAGAACAACCTGAACTCAATCAAGACCAAGCTCCACACGCTCGGGGCCGACTTTGGCGAGCTGTCGGACGCGACCGAACACTTCCTGCGCTCGATCCTGCAGTGCCGGGACAGCATCCGGGAGTACTTCGGCACCAAGCAAACCGTGACCGGTCCGGGCAGTGTGGAAGCGATCGCGGAGGGCTACGAGCAGTTCAAGCAGGCCACGATGGAGTACTTCCGCGGGTTGCTGCAGCAGAGCGAGCAGATCATCGAGCGGGTGAAGGCGCTGGAACCGCCCGGAGCCCGCGAGCTCGACACGGACAAGATCATCACGCTGCTGGAGAA CTGCGGACGTACTTCGAGTCGCAGACCGAATCGGAGAACTGTGAGCTGAAGAAGCAGCACAGTGTGCTGGCGTTCGACCGTGAGCTCGGGGAGGTGCGGGCTGCGATTCGGGCGGAGGCTGAGCGGTTGGACCGGACCCGTGGACAGTACGGGGAGAGTGTGGCCGAGGCTCAGTCCGTCCGGGTCGCTTTCGAGGAGCGGGCAACAATACTGCAGGATCTTGAGCGTCGTATCGATGCATTTATTAGCTCTGGAGCGGAGCTCGT ACGCCAGTACCCCGAGACAAGCCCTTACATCGAGTCGGAAACGCACAAGATACGCAACGAGTGGACGGAACTT TGCGCAAGCT CGAGGAGCACCGCCAGCTTCACACCATTGCGATCGAGTACTTCG ] [+] EMBL CNS09BY9 [ cgCATTGGCCGTAGCATCCAAGCTGGAGGAGCAGCTGTATCCGCTCTTCAGCACCGCCCTGGACAATCCAGCCGATCTGATCGAGTTTATCGGCCGCAAACGTACCCAGCTGCAGCAGGATGTGCAGGTCGCTGAAGCCGATCTGACCCAGCGCTTCGACACGATCGCACAGCTGGAGGCGGCCGGTGCCGACCCCGGCACAGAACAGGACATGGTGGCGGTGAAGAACAACCTGAACTCAATCAAGACCAAGCTCCACACGCTCGGGGCCGACTTTGGCGAGCTGTCGGACGCGACCGAACACTTCCTGCGCTCGATCCTGCAGTGCCGGGACAGCATCCGGGAGTACTTCGGCACCAAGCAAACCGTGACCGGTCCGGGCAGTGTGGAAGCGATCGCGGAGGGCTACGAGCAGTTCAAGCAGGCCACGATGGAGTACTTCCGCGGGTTGCTGCAGCAGAGCGAGCAGATCATCGAGCGGGTGAAGGCGCTGGAACCGCCCGGAGCCCGCGAGCTCGACACGGACAAGATCATCACGCTGCTGGAGAACCTGCGGACGTACTTCGAGTCGCAGACCGAATCGGAGAACTGTGAGCTGAAGAAGCAGCACAGTGTGCTGGCGTTCGACCGTGAGCTCGGGGAGGTGCGGGCTGCGATTCGGGCGGAGGCTGAGCGGTTGGACCGGACCCGTGGACAGTACGGGGAGAGTGTGGCCGAGGCTCAGTCCGTCCGGGTCGCTTTCGAGGAGCGGGCAACAATACTGCAGGATCTTGAGCGTCGTATCGATGCATTTATTAGCTCTGGAGCGGAG TCGTAACGCCAGTACCCCGAGACAAGCCCTTACATCGAGTCGGAAACGCACAAGATACGCAACGAGTGGACGG ACTTGCTGCGCAA CTCCGAGGAGCACCGCCAGCTTCACACCATTGCGATCGAGTACTTCGAGCTGATCACCATGACCTGGGTGGATGGTCATAGGGGTTTCCTG] [-] EMBL CNS094ZZ [ CGACACGATCGCACAGCTGGAGGCGGCCGGTGCCGACCCCGGCACGGAACAGGACATGGTGGCGGTGAAGAACAACCTAAACTCAATCAAGACCAAGCTCCACACGCTCGGGGCCGACTTTGGCGAGCTGTCGGACGCGACCGAACACTTCCTGCGCTCGATCCTGCAGTGCCGGAACAGCATCCGGGAGTACTTCGGCACCAAGCAAA CGTGACCGGTCCGGGCAGTGTGGAAGCGATCGCGGAGGGCTACGAGCAGTTCAAGCAGGCCACGATGGAGTACTTCCGCGGGTTGCTGCAGCAGAGCGAGCAGATCATCGAGCGGGTGAAGGCGCTGGAACCGCCAGGAGCCCGCGAGCTCGACACGGACAAGATCATCACGCTGCTGGAGAATCTGCGGACGTACTTCAAATCGCAGACCGAATCGGAGAACTGTGAGCTGAAGAAGCAGCACAGTGTGCTGGCGTTCGACCGTGAGCTCGGGGAGGTGCGGGCTGCGATTCGGGCGGAGGCTGAGCGGTTGGAGCGGACCCGCGGACAGTACGGGGAGAGTGTGGCCGAGGCTCAGTCCGTGCGGGTTGCTTTCGAGGAGCGGGCAACAATACTGCAGGAACTTGAGCGTCGTATCGATGCATTTATTAGCTCTGGAACGGAGCTCGT ACGCCAGTACCCCGAGACAAGCCCTTACATCGAGTCGGAAACACACAAGATACGCAACGAGTGGACGGTAC T CTGCGCAAGCT CGAGGAGCACCGCCAGCTc ] [-] EMBL CNS094SQ [ TGCAGTGCCGGGACAGCATCCGGGAGTACTTCGGCACCAAGCAAACCGTGACCGGTCCGGGCAGTGTGGAAGCGATCGCGGAGGGCTACGAGCAGTTCAAGCAGGCCACGATGGAGTACTTCCGCGGGTTGCTGCAGCAGAGCGAGCAGATCATCGAGCGGGTGAAGGCGCTGGAACCGCCAGGAGCCCGCGAGCTCGACACGGACAAGATCATCACGCTGCTGGAGAATCTGCGGACGTACTTCGAGTCGCAGACCGAATCGGAGAACTGTGAGCTGAAGAAGCAGCACAGTGTGCTGGCGTTCGACCGTGAGCTCGGGGAGGTGCGGGCTGCGATTCGGGCGGAGGCTGAGCGGTTGGAGCGGACCCGCGGACAGTACGGGGAGAGTGTGGCCGAGGCTCAGTCCGTGCGGGTTGCTTTCGAGGAGCGGGCAACAATACTGCAGGAACTTGAGCGTCGTATCGATGCATTTATTAGCTCTGGAACGGAGCTCGT ACGCCAGTACCCCGAGACAAGCCCTTACATCGAGTCGGAAACACACAAGATACGCAACGAGTGGACGGTACT ] consensusID : consensus_6868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 726 fasta sequence [GTCAGTAATGAGTGGGAAAGCTGGAACAGTCGACGACGCACGGAGACAACACTGAAGCAAATCATGGCTGCCAACATGGAGACATTGGCCGTAGCATCCAAGCTGGAGGAGCAGCTGTATCCGCTCTTCAGCACCGCCCTGGACAATCCAGCCGATCTGATCGACTTTATCGGCCGCAAACGTACCCAGCTGCAGCAGGATGTGCAGGTCGCTGAAGCCGATCTGACCCAGCGCTTCGACACGATCGCACAGCTGGAGGCGGCCGGTGCCGACCCCGGCACGGAACAGGACATGGTGGCGGTGAAGAACAACCTAAACTCAATCAAGACCAAGCTCCACACGCTCGGGGCCGACTTTGGCGAGCTGTCGGACGCGACCGAACACTTCCTGCGCTCGATCCTGCAGTGCCGGGACAGCATCCGGGAGTACTTCGGCACCAAGCAAACCGTGACCGGTCCGGGCAGTGTGGAAGCGATCGCGGAGGGCTACGAGCAGTTCAAGCAGGCCACGATGGAGTACTTCCGCGGGTTGCTGCAGCAGAGCGAGCAGATCATCGAGCGGGTGAAGGCGCTGGAACCGCCAGGAGCCCGCGAGCTCGACACGGACAAGATCATCACGCTGCTGGAGAATCTGCGGACGTACTTCGAGTCGCAGACGAATCGGAGAACTGTGAGCTGAAGAAGCAGCACAGTGTGCTGGCGTTCGACCGGGAGCTCGGGGAGGTGC] [+] EMBL CNS094SP [GTCAGTAATGAGTGGGAAAGCTGGAACAGTCGACGACGCACGGAGACAACACTGAAGCAAATCATGGCTGCCAACATGGAGACATTGGCCGTAGCATCCAAGCTGGAGGAGCAGCTGTATCCGCTCTTCAGCACCGCCCTGGACAATCCAGCCGATCTGATCGACTTTATCGGCCGCAAACGTACCCAGCTGCAGCAGGATGTGCAGGTCGCTGAAGCCGATCTGACCCAGCGCTTCGACACGATCGCACAGCTGGAGGCGGCCGGTGCCGACCCCGGCACGGAACAGGACATGGTGGCGGTGAAGAACAACCTAAACTCAATCAAGACCAAGCTCCACACGCTCGGGGCCGACTTTGGCGAGCTGTCGGACGCGACCGAACACTTCCTGCGCTCGATCCTGCAGTG ] [+] EMBL CNS094ZY [ TGGGAAAGCTGGAACAGTCGACGACGCACGGAGACAACACTGAAGCAAATCATGGCTGCCAACATGGAGACATTGGCCGTAGCATCCAAGCTGGAGGAGCAGCTGTATCCGCTCTTCAGCACCGCCCTGGACAATCCAGCCGATCTGATCGAGTTTATCGGCCGCAAACGTACCCAGCTGCAGCAGGATGTGCAGGTCGCTGAAGCCGATCTGACCCAGCGCTTCGACACGATCGCACAGCTGGAGGCGGCCGGTGCCGACCCCGGCACGGAACAGGACATGGTGGCGGTGAAGAACAACCTAAACTCAATCAAGACCAAGCTCCACACGCTCGGGGCCGACTTTGGCGAGCTGTCGGACGCGACCGAACACTTCCTGCGCTCTTTCCTGCAGTGCCGGGACAGCATCCGGGAGTACTTCGGCACCAAGCAAACCGTGACCGGTCCGGGCAGTGTGGAAGCGATCGCGGAGGGCTACGAGCAGTTCAAGCAGGCCACGATGGAGTACTTCCGCGGGTTGCTGCAGCAGAGCGAGCAGATCATCGAGCGGGTGAAGGCGCTGGAACCGCCAGGAGCCCGCGAGCTCGACACGGACAAGATCATCACGCTGCTGGAGAATCTGCGGACGTACTTCGAGTCGCAGACGAATCGGAGAACTGTGAGCTGAAGAAGCAGCACAGTGTGCTGGCGTTCGACCGGGAGCTCGGGGAGGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6868#0 -------------------------------------------------CACCAAGAACT 11 consensus_6868#1 GTCAGTAATGAGTGGGAAAGCTGGAACAGTCGACGACGCACGGAGACAACACTGAAGCAA 60 *** * consensus_6868#0 GTTG-GCCTACTGGCTGGGGAGACATTGGCCGTAGCATCCAAGCTGGAGGAGCAGCTGTA 70 consensus_6868#1 ATCATGGCTGCCAAC-ATGGAGACATTGGCCGTAGCATCCAAGCTGGAGGAGCAGCTGTA 119 * * ** * * ****************************************** consensus_6868#0 TCCGCTCTTCAGCACCGCCCTGGACAATCCAGCCGATCTGATCGAGTTTATCGGCCGCAA 130 consensus_6868#1 TCCGCTCTTCAGCACCGCCCTGGACAATCCAGCCGATCTGATCGACTTTATCGGCCGCAA 179 ********************************************* ************** consensus_6868#0 ACGTACCCAGCTGCAGCAGGATGTGCAGGTCGCTGAAGCCGATCTGACCCAGCGCTTCGA 190 consensus_6868#1 ACGTACCCAGCTGCAGCAGGATGTGCAGGTCGCTGAAGCCGATCTGACCCAGCGCTTCGA 239 ************************************************************ consensus_6868#0 CACGATCGCACAGCTGGAGGCGGCCGGTGCCGACCCCGGCACAGAACAGGACATGGTGGC 250 consensus_6868#1 CACGATCGCACAGCTGGAGGCGGCCGGTGCCGACCCCGGCACGGAACAGGACATGGTGGC 299 ****************************************** ***************** consensus_6868#0 GGTGAAGAACAACCTGAACTCAATCAAGACCAAGCTCCACACGCTCGGGGCCGACTTTGG 310 consensus_6868#1 GGTGAAGAACAACCTAAACTCAATCAAGACCAAGCTCCACACGCTCGGGGCCGACTTTGG 359 *************** ******************************************** consensus_6868#0 CGAGCTGTCGGACGCGACCGAACACTTCCTGCGCTCGATCCTGCAGTGCCGGGACAGCAT 370 consensus_6868#1 CGAGCTGTCGGACGCGACCGAACACTTCCTGCGCTCGATCCTGCAGTGCCGGGACAGCAT 419 ************************************************************ consensus_6868#0 CCGGGAGTACTTCGGCACCAAGCAAACCGTGACCGGTCCGGGCAGTGTGGAAGCGATCGC 430 consensus_6868#1 CCGGGAGTACTTCGGCACCAAGCAAACCGTGACCGGTCCGGGCAGTGTGGAAGCGATCGC 479 ************************************************************ consensus_6868#0 GGAGGGCTACGAGCAGTTCAAGCAGGCCACGATGGAGTACTTCCGCGGGTTGCTGCAGCA 490 consensus_6868#1 GGAGGGCTACGAGCAGTTCAAGCAGGCCACGATGGAGTACTTCCGCGGGTTGCTGCAGCA 539 ************************************************************ consensus_6868#0 GAGCGAGCAGATCATCGAGCGGGTGAAGGCGCTGGAACCGCCCGGAGCCCGCGAGCTCGA 550 consensus_6868#1 GAGCGAGCAGATCATCGAGCGGGTGAAGGCGCTGGAACCGCCAGGAGCCCGCGAGCTCGA 599 ****************************************** ***************** consensus_6868#0 CACGGACAAGATCATCACGCTGCTGGAGAATCTGCGGACGTACTTCGAGTCGCAGACCGA 610 consensus_6868#1 CACGGACAAGATCATCACGCTGCTGGAGAATCTGCGGACGTACTTCGAGTCGCAGAC-GA 658 ********************************************************* ** consensus_6868#0 ATCGGAGAACTGTGAGCTGAAGAAGCAGCACAGTGTGCTGGCGTTCGACCGTGAGCTCGG 670 consensus_6868#1 ATCGGAGAACTGTGAGCTGAAGAAGCAGCACAGTGTGCTGGCGTTCGACCGGGAGCTCGG 718 *************************************************** ******** consensus_6868#0 GGAGGTGCGGGCTGCGATTCGGGCGGAGGCTGAGCGGTTGGACCGGACCCGTGGACAGTA 730 consensus_6868#1 GGAGGTGC---------------------------------------------------- 726 ******** consensus_6868#0 CGGGGAGAGTGTGGCCGAGGCTCAGTCCGTCCGGGTCGCTTTCGAGGAGCGGGCAACAAT 790 consensus_6868#1 ------------------------------------------------------------ consensus_6868#0 ACTGCAGGATCTTGAGCGTCGTATCGATGCATTTATTAGCTCTGGAGCGGAGCTCGTACG 850 consensus_6868#1 ------------------------------------------------------------ consensus_6868#0 CCAGTACCCCGAGACAAGCCCTTACATCGAGTCGGAAACGCACAAGATACGCAACGAGTG 910 consensus_6868#1 ------------------------------------------------------------ consensus_6868#0 GACGGTACTTCTGCGCAAGCTCGAGGAGCACCGCCAGCTTCACACCATTGCGATCGAGTA 970 consensus_6868#1 ------------------------------------------------------------ consensus_6868#0 CTTCGAGCTGATCACCATGACCTGGGTGGATGGTCATAGGGGTTTCCTG 1019 consensus_6868#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||