These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [GCAGATCCCCCGAGGTTAACACACGAAAACACTCGCAGCGTCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACTCCTTCTATCTAAACTCGGCGGTTTCGAGGTGCGATCCATCGAATCGTCCGGTTGATNTCGATTAGACGNGNCCAAAAGTTAGTGTCAGCGATGTTGCCAACGATGCGCTGCAGCACTGCGAANAACGCGCACGAACAGTGCGCCGAGNCTCCGGNGCACGNGGTCGTCCAAAACACCAGAACCAGAAATCGTACAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAACCGGCACTGAACCGATNACAGATAATGTGCGCAAAGNCGCACTANTATCNCGGCCCANANCACACNGGAACGNGNNGCGCACCAACAGCGGCAAGNTACGCACGGTCGCCGNNTGGCACACACATAAGGACCCACCATCGGGAANNGACGGNACAGGCAAGAAGCCAANACAGCATCCGGCGACAACGGCGNGCGNACGAAAGCGGGCAACTCCACCCACAAAACCAACACANCCACAGCACNTACCAACNCAACANAACAAAAATACCCCAACAACAACNCGCACGCACANACACAGGGGCCAAC] [+] EMBL AL695516 [GCAGATCCCCCGAGGTTAACACACGAAAACACTCGCAGCGTCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACTCCTTCTATCTAAACTCGGCGGTTTCGAGGTGCGATCCATCGAATCGTCCGGTTGATNTCGATTAGACGNGNCCAAAAGTTAGTGTCAGCGATGTTGCCAACGATGCGCTGCAGCACTGCGAANAACGCGCACGAACAGTGCGCCGAGNCTCCGGNGCACGNGGTCGTCCAAAACACCAGAACCAGAAATCGTACAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAACCGGCACTGAACCGATNACAGATAATGTGCGCAAAGNCGCACTANTATCNCGGCCCANANCACACNGGAACGNGNNGCGCACCAACAGCGGCAAGNTACGCACGGTCGCCGNNTGGCACACACATAAGGACCCACCATCGGGAANNGACGGNACAGGCAAGAAGCCAANACAGCATCCGGCGACAACGGCGNGCGNACGAAAGCGGGCAACTCCACCCACAAAACCAACACANCCACAGCACNTACCAACNCAACANAACAAAAATACCCCAACAACAACNCGCACGCACANACACAGGGGCCAAC] consensusID : consensus_6871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 701 fasta sequence [CCGCACGAAAACAACTCGCATCGTCCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCA---TTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCCCGAATCGTCCGGTTGATTTCGATTGCGGCCCAAAAGTTTGTGTCGGATGTTGCCAACGATGCGCTGCAGCACTGCAAAACGCGCACGAACAGTGCGCCGAGCTCCGGGCACGGGTCGTCCAAAAACCAGAACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAGCCGGCACTGAACGATTACGGCATTACTGTTCGCAAAGCGCACTATTTCGTCTAGACAGGGAAGGAGGTTTAGGGTGTGTGTGTGTGTGTGTGCAAATTGCCACTGGAGGGGGGAAGGTTGTGCAGGTTGGAAGGGGAAGAGGGAATTACAAGAAGAAAAAAAATGTATCTTTATAATGGGTGGTATTATTGAATCCATTCGTAGCGGGAACTTACGGCGCGCACATGAAATTCTAGG] [+] EMBL BM590602 [CCGCACGAAAACAACTCGCATCGTCCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCA TTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCCCGAATCGTCCGGTTGATTTCGATTGCGGCCCAAAAGTTTGTGTCGGATGTTGCCAACGATGCGCTGCAGCACTGCAAAACGCGCACGAACAGTGCGCCGAGCTCCGGGCACGGGTCGTCCAAAAACCAGAACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAGCCGGCACTGAACGATTACGGCATTACTGTTCGCAAAGCGCACTATTTCGTCTAGACAGGGAAGGAGGTTTAGGGTGTGTGTGTGTGTGTGTGCAAATTGCCACTGGAGGGGGGAAGGTTGTGCAGGTTGGAAGGGGAAGAGGGAATTACAAGAAGAAAAAAAATGTATCTTTATAATGGGTGGTATTATTGAATCCATTCGTAGCGGGAACTTACGGCGCGCACAT ] [+] EMBL BX606910 [ GTCCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCATTTTTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCACGGCAAGAAGGTGTCCGAAATGGTGGAAG ] [-] EMBL CNS08QR0 [ GAGGTTTAGG GTGTGTGTGTGTGTGTGCAAATTGCCACTGGA GGGGGAAGGTTGTGCAGGTTGGAAGGGGGCGAGGGAATTACAAGAAGAAAAAAAATGTATCTTTATAATGGCTGGTATTATTGAATCCATTCGTAGCGGGAACGTACGGCGCGCACATGAAATTCTAGG] consensusID : consensus_6871#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [TCCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCTCGAATGTAGGGCACCGAGTCGCAGAACGCAATGGCGAACACTGTTAATTGAACATTTCCCTTTGTTTTTACGCTCTTTCTGTTCGTTTGCAGCGTCCGGTTGATTTCGATTGCGGCCCAAAACGCGCACGAACAGTGCCCGAGCTCCGGGCACGGGTCGTCCAAAAACCAGAACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATT] [+] EMBL CNS08QQZ [TCCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCTCGAATGTAGGGCACCGAGTCGCAGAACGCAATGGCGAACACTGTTAATTGAACATTTCCCTTTGTTTTTACGCTCTTTCTGTTCGTTTGCAGCGTCCGGTTGATTTCGATTGCGGCCCAAAACGCGCACGAACAGTGCCCGAGCTCCGGGCACGGGTCGTCCAAAAACCAGAACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATT] consensusID : consensus_6871#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCC] [+] EMBL BM595286 [CCGCGGACGCGTGGGCGGACGCGTGGGTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6871#0 GCAGATCCCCCGAGGTTAACACACGAAAACA-CTCGCAGCGTC-GCGTCGTACCGATTGT 58 consensus_6871#3 ----------------------CCGCGGACG-CGTGGGCGGAC-GCGT------GGGTGT 30 consensus_6871#1 ------------------CCGCACGAAAACAACTCGCATCGTCCGCGTCGTACCGATTGT 42 consensus_6871#2 -----------------------------------------TCCGCGTCGTACCGATTGT 19 * **** * *** consensus_6871#0 GTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGG 118 consensus_6871#3 GTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGG 90 consensus_6871#1 GTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGG 102 consensus_6871#2 GTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGG 79 ************************************************************ consensus_6871#0 GCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACC 178 consensus_6871#3 GCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACC 150 consensus_6871#1 GCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACC 162 consensus_6871#2 GCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACC 139 ************************************************************ consensus_6871#0 GCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGA 238 consensus_6871#3 GCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGA 210 consensus_6871#1 GCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGA 222 consensus_6871#2 GCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGA 199 ************************************************************ consensus_6871#0 TTCCCGATGCAGTCAC-TCCTTCTATCTAAACTCGGC-GGTTTCGAGG-TGC-GATCCAT 294 consensus_6871#3 TTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCC- 269 consensus_6871#1 TTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCC-C 281 consensus_6871#2 TTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCC-T 258 **************** ******************** ********** *** ***** consensus_6871#0 CGAAT------CGTCCGGTTG---ATNTCGATTAGACGNGNC------CAAAAGTTAGTG 339 consensus_6871#3 ------------------------------------------------------------ consensus_6871#1 CGAAT------CGTCCGGTTG---ATTTCGATTGCGGCC---------CAAAAGTTTGTG 323 consensus_6871#2 CGAATGTAGGGCACCGAGTCGCAGAACGCAATGGCGAACACTGTTAATTGAACATTTCCC 318 consensus_6871#0 TCAGCGATGTTGC------------------CAACGATGCGCTG-------CAGCACTGC 374 consensus_6871#3 ------------------------------------------------------------ consensus_6871#1 TCGG--ATGTTGC------------------CAACGATGCGCTG-------CAGCACTGC 356 consensus_6871#2 TTTG--TTTTTACGCTCTTTCTGTTCGTTTGCAGCGTCCGGTTGATTTCGATTGCGGCCC 376 consensus_6871#0 GAANAACGCGCACGAACAGTGCGCCGAGNCTCCGGNGCACGNGGTCGTCCAAAACACCAG 434 consensus_6871#3 ------------------------------------------------------------ consensus_6871#1 --AAAACGCGCACGAACAGTGCGCCGAGCTCCGGGCAC---GGGTCGTCCAAAA-ACCAG 410 consensus_6871#2 --AAAACGCGCACGAACAGTGC-CCGAGCTCCGGGCAC---GGGTCGTCCAAAA-ACCAG 429 consensus_6871#0 AACCAGAAATCGTACAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAACCGGCA 494 consensus_6871#3 ------------------------------------------------------------ consensus_6871#1 AACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAGCCGGCA 470 consensus_6871#2 AACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATT----------- 478 consensus_6871#0 CTGAACCGATNACAGATAATGTGCGCAAAGNCGCACTANTATCNCGGCCCANANCACACN 554 consensus_6871#3 ------------------------------------------------------------ consensus_6871#1 CTGAACGATTACGGCATTACTGTTCGCAAAGCGCACTATTTCGTCTAGACAGGGAAGGAG 530 consensus_6871#2 ------------------------------------------------------------ consensus_6871#0 GGAACGNGNN-GCGCACCAACAGCGGCAAGNTACGCACGGTCGCCGNNTGGCACACACAT 613 consensus_6871#3 ------------------------------------------------------------ consensus_6871#1 GTTTAGGGTGTGTGTGTGTGTGTGTGCAAATTGC-CACTGGAGGGGGGAAGGTTGTGCAG 589 consensus_6871#2 ------------------------------------------------------------ consensus_6871#0 AAGGACCCACCATCGGGAANNGACGGNACAGGCAAGAAGCCAANACAGCATCCGGCGACA 673 consensus_6871#3 ------------------------------------------------------------ consensus_6871#1 GTTGGAAGGGGAAGAGGGAATTACAAGAAGAAAAAAAATGTATCTTTATAATGGGTGGTA 649 consensus_6871#2 ------------------------------------------------------------ consensus_6871#0 ACGGCGNGCGNACGAAAGCGGGCAACTCCACCCACAAAACCAACACANCCACAGCACNTA 733 consensus_6871#3 ------------------------------------------------------------ consensus_6871#1 TTATTGAATCCATTCGTAGCGGGAACTTACGGCGCGCACATGAAATTCTAGG-------- 701 consensus_6871#2 ------------------------------------------------------------ consensus_6871#0 CCAACNCAACANAACAAAAATACCCCAACAACAACNCGCACGCACANACACAGGGGCCAA 793 consensus_6871#3 ------------------------------------------------------------ consensus_6871#1 ------------------------------------------------------------ consensus_6871#2 ------------------------------------------------------------ consensus_6871#0 C 794 consensus_6871#3 - consensus_6871#1 - consensus_6871#2 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||