These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1202 fasta sequence [ATCGAGCGGCAGCACACCTTAAAAAAGCTCCTTATTTTCGAGTTTTCTTGTATTCCCGTCATGTTGCATAGTCTCATTTTATTTGTATGTGCGGTGAAATTTGTTTTTTCCTCTTATATTTGTCTCTTTTGTAAGTAGATTTTCTATTGTTTCTATATTCTATCTATGTGTTGAACACAAATGTGTACATATGTTGCCTTTTGTTCTGTTCGTGGCCATCTATTATCCCCGTAATAGTGGGCAATTTCGGGTTCTGTTTCTGTTTTGTATTGTGTTTCGTCTTCGCTATCGTAATGGCGATCTTCTTTGTGTGGCGAATTGTGATAAAGAAAAAGAGATTGTTTCAATTGTTGTCAACTCAGATCCGGCCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACGGGCCGAAATGCAGCAACGGTCCGGACATCATGCGCTGCTGGGCATGGGCACGGATGCAGTTACCGCGATCGATCAAGTGCCAACGTCCACCAATCGTACGAAATGCGTTGATGGGATGGTGGTGAGCTACGGCGTAAAGCAAACGAAACTGCAGCAATACTACTGTAAAGATGAGCCGATGCATAATGATGAACAGGTAGTGGCAATGGTGCCTCAGAACAAGCTGGAGGCGGTAGGAAAGGAAGAAGAGAACGATCTCTTGATCGACACGGATTATGAAAATGATACCTTCGAAGAGGACATCGATGAACGTTAACGAAGGCTTTTTATGCGCAATAGTAGCTAACGACACAGGTTGCAAGTACAAGGGCCTTTTCTATCAATGCTTGTGAATAGTCATTTAGAGGAAGAAGGGGAGCAGTAGTAGAAGAAGAGTAGAGTGTTATTATCGGTACTATTTCATTTTTGGCACAATCATACAGTTCGCATAGTCGCGCGTAAAGAGGCGCCATTCAGAAGTGAAACCAATTCAACAGTAAAGCAACAAATAATCATAATCACAATGATAGTCAAGCAAACCCATGCTGTGGTGTAGCAAGTAAATTAGCACAATTGCTGTGGCCGTGGTGTTATAGAGAAATAGGGGGCGCGTCTGCAATACAAATAGAACACGCTGTTTCTACTCTTATCTTTTTAACCGTCGCTGAAAACATGTCCTACGTTACATAGAAGAGAAATAATTTAATACCGTTGTTACAAGCCTCTGAGGAGGGGAGAGCAGAAAGGTAAAGAGATGTATA] [+] EMBL BX627717 [ATCGAGCGGCAGCACACCTTAAAAAAGCTCCTTATTTTCGAGTTTTCTTGTATTCCCGTCATGTTGCATAGTCTCATTTTATTTGTATGTGCGGTGAAATTTGTTTTTTCCTCTTATATTTGTCTCTTTTGTAAGTAGATTTTCTATTGTTTCTATATTCTATCTATGTGTTGAACACAAATGTGTACATATGTTGCCTTTTGTTCTGTTCGTGGCCATCTATTATCCCCGTAATAGTGGGCAATTTCGGGTTCTGTTTCTGTTTTGTATTGTGTTTCGTCTTCGCTATCGTAATGGCGATCTTCTTTGTGTGGCGAATTGTGATAAAGAAAAAGAGATTGTTTCAATTGTTGTCAACTCAGATCCGGCCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACGGGCCGAAATGCAGCAACGGTCCGGACATCATGCGCTGCTGGGCATGGGCACGGATGCAGTTACCGCGATCGATCAAGTGCCAACGTCCACCAATCGTACGAAATGCGTTGATGGGATGGTGGTGAGCTACGGCGTAAAACNAACGAAACTGCAGCAATACTACTGTAAAGATGAGCCGATGCATAATGATGAACAGGTAGTGGCNATGGTGCCTCAna ] [+] EMBL BX618330 [ GCGAATTGTGATAAAGAAAAAGAGATTGTTTCAATTGTTGTCAACTCAGAACCGGCCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACGGGCCGAAATGCAGCAACAGCCCGGACATCATGCGCTGCTGGGCATGGGCACGGATGCAGTTATCGCGATCGAACAAGTGCCAACGTCCACCAATCGTACGAAATGCGTTGAAGGGATGGTGGTGAGCTACGGCGTAAAGCAAACGAAACTGCAGCAATACTACTGTAAAGATGAGCCGAAGCATAATGATGAACAGGTAGTGGCAATGGTGCCTCAGAACAAGCTGGAGGCGGTAGGAAAGGAAGAAGAGAACGATCTCTTGATCGACACGGATTATGAAAATGATACCTTCGAAGAGGACATCGATGAACGTTAACGAAGGCTTTTTATGCGCAATAGTAGCTAACGACACAGGTTGCAAGTACAAGGGCCTTTTCTATCAATGCTTGTGAATAGTCATTTAGAGGAAGAAGGGGAGCAGTAGTAGAAGAAGAGTAGAGTGTTATTATCGGTACTATTTCATTTTTGGCACAATCATACAGTTCGCATAGTCGCGCGTAAAGAGGCGCCATTCAGAAGTGAAACCAATTCAACAGT ] [+] EMBL BX610898 [ GATGGGATGGTGGTGAGCTACGGCGTAAAGCAAACGAAACTGCAGCAATACTACTGTAAAGATGAGCCGATGCATAATGATGAACAGGTAGTGGCAATGGTGCCTCAGATCAAGCTGGAGGCGGTAGGAAAGGAAGATGAGAACGATCTCTTGATCGACACGGATTATGATAATGATACCTTCGAAGAGGACATCGATGATCGTTAACGAATGCTTTTTATGCGCAATAGTAGCTAACGACACAGGTTGCAAGTACAAGGGCCTTTTCTATCAATGCTTGTGAATAGTCATTTAGAGGAAGAAGGGGAGCAGTAGTAGAAGAAGAGTAGAGTGTTATTATCGGTACTATTTCATTTTTGGCACAATCATACAGTTCGCATAGTCGCGCGTAAAGAGGCGCCATTCAGAAGTGAAACCAATTCAACAGTAAAGCAACAAATAATCATAATCACAATGATAGTCAAGCAAACCCATGCTGTGGTGTAGCAAGTAAATTAGCACAATTGCTGTGGCCGTGGTGTTATAGAGAAATAGGGGGCGCGTCTGCAATACAAATAGAACACGCTGTTTCTACTCTTATCTTTTTAACCGTCGCTGAAAACATGTCCTACGTTACATAGAAGAGAAATAATTTAATACCGTTGTTACAAGCCTCTGAGGAGGGGAGAGCAGAAAGGTAAAGAGATGTATA] consensusID : consensus_6872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 887 fasta sequence [TGCAGGAAGGCAAGCTGTTTTCCACCTTCTACGGCACCACGGAGTACTGCAGTCCCGAGGTGTTGGCCGGGAACAAGTACGCCGGACCGGAGCTGGAAATGTGGTCCCTGGGCGTAACGCTGTATGTGCTGATGTTTTTCGAAAATCCCTTCCTGGACATCGAGGAAACGCTAAAGTCGGAACTGATCATACCGCAGGAGATCAGTCCCGAGCTGGAGTACGTGTTGCTGTCCCTGCTGGACAAGAACCCCAAAACGCGCATCACGATGAAGCAACTGATCTGCACGGAGTGGTTGACGCAAGAAATTAACCCAAGCGCATTCAACTTTGCCCACATAGTGCCCTGTGAACCGTACGAAGTGAACCCGGAAAAGTACTTCAACGGCCAGATATACTCGAGTCAAACCGGTCTGTCCACCTCACCGCACAGCTTATCGTTGGTGGATGATGAGGATGAAGGCGACGATGAGGAGGAGGACGAGCCGCATGCTCACATAGACGATTCGTTTGTTGATCCGGATGAATTGCAGGACGATGACATTTGTCCATTGACGCACGACGACGAAAAGCTACCAGAACGATCATACGAACTATGCAGTGGACGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAGGAATTCAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACCACCGCGGCAGTGTCTGGCGTTATAGGTACAGATCCGGTCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACNGGCCGAAATGCAGCAACAGCCCGGACATCATGCGCTGCTGGGCATGGGCACNGATGCAGTTATCGCGATCGATCAAGTGCCAACGTCCNCCATCGTACGAAATGCGTTGATG] [+] EMBL BX625187 [TGCAGGAAGGCAAGCTGTTTTCCACCTTCTACGGCACCACGGAGTACTGCAGTCCCGAGGTGTTGGCCGGGAACAAGTACGCCGGACCGGAGCTGGAAATGTGGTCCCTGGGCGTAACGCTGTATGTGCTGATGTTTTTCGAAAATCCCTTCCTGGACATCGAGGAAACGCTAAAGTCGGAACTGATCATACCGCAGGAGATCAGTCCCGAGCTGGAGTACGTGTTGCTGTCCCTGCTGGACAAGAACCCCAAAACGCGCATCACGATGAAGCAACTGATCTGCACGGAGTGGTTGACGCAAGAAATTAACCCAAGCGCATTCAACTTTGCCCACATAGTGCCCTGTGAACCGTACGAAGTGAACCCGGAAAAGTACTTCAACGGCCAGATATACTCGAGTCAAACCGGTCTGTCCACCTCACCGCACAGCTTATCGTTGGTGGATGATGAGGATGAAGGCGACGATGAGGAGGAGGACGAGCCGCATGCTCACATAGACGATTCGTTTGTTGATCCGGATGAATTGCAGGACGATGACATTTGTCCATTGACGCACGACGACGAAAAGCTACCAGAACGATCATACGAACTATGCAGTGGACGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAGGAATTCAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACCACCGCGGCAGTGTCTGGCGTTATAGGTACAGATCCGGTCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACNGGCCGAAATGCAGCAACAGCCCGGACATCATGCGCTGCTGGGCATGGGCACNGATGCAGTTATCGCGATCGATCAAGTGCCAACGTCCNCCATCGTACGAAATGCGTTGATG] [+] EMBL BM611758 [ ccgACTTCAACGGCCAGATATACTCGAGTCAAACCGGTCTGTCCACCTCACCGCACAGCTTATCGTTGGTGGATGATGAGGATGAAGGCGACGATGAGGAGGAGGACGAGCCGCATGCTCACATAGACGATTCGTTTGTTGATCCGGATGAATTGCAGGACGATGACATTTGTCCATTGACGCACGACGACGAAAAGCTACCAGAACGATCATACGAACTATGCAGTGGACGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAGGAATTCAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACCACCGCGGCAGTGTCTGGCGTTATAGGTACAGATCCGGCCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACGGGCCGAAATGCAGCAACAGCCCGGACATCATGCGCTGCTGGGCATGGGCACGGATGCAGTTATCGCGATCGATC ] consensusID : consensus_6872#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCGCGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAGGAATTCAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACCACCGCGGCAGTGTCTGGCGTTATAGGTACAGGTAATTCAAACGCTTGCTACGCGTACGCAGAACACTCCGTTCCTGTCGTTGTGTCGTATTTTGGTGGTGGGTCTCAGGCTAATCCTTCCCTCGTAAATATGTCCCCGGCCGACTGTGGTGGTGCTGGTGGTGCAGATGGAAGTGGTAACATTGAGTCGAATGCTATATCCATTTCCACGGCCGCCAGCAGCAGCAGCAGCATTCCCGTTCAATGTGTTTCCGAATGTGTGTACAAGCCCAGTACGTTTGAGTGTGATGTCGTTGAACGTGCAGCCTCCCTGGTCGGTGCAACAGATGCCGAAAGGATCCCAAGAGTCGGCTCTGTCTCGACGGCCATCGTAAACAGCCCTTCGCTTTTGCCCCTACAAACAATCGCCTGCGAGGAAACCGCTAGACAAGCGTACAGACGCAGCAATCGGCAGTCCATGTGTGACTCGAGCTGTTCTACTACGCCATCGCTCGCATTGCCGCCCTCTTCCTCGGTGCTGATGTGCACCATGATGCCCTACTCAGTGCTAAATAG] [+] EMBL BM625341 [CCGCGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAGGAATTCAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACCACCGCGGCAGTGTCTGGCGTTATAGGTACAGGTAATTCAAACGCTTGCTACGCGTACGCAGAACACTCCGTTCCTGTCGTTGTGTCGTATTTTGGTGGTGGGTCTCAGGCTAATCCTTCCCTCGTAAATATGTCCCCGGCCGACTGTGGTGGTGCTGGTGGTGCAGATGGAAGTGGTAACATTGAGTCGAATGCTATATCCATTTCCACGGCCGCCAGCAGCAGCAGCAGCATTCCCGTTCAATGTGTTTCCGAATGTGTGTACAAGCCCAGTACGTTTGAGTGTGATGTCGTTGAACGTGCAGCCTCCCTGGTCGGTGCAACAGATGCCGAAAGGATCCCAAGAGTCGGCTCTGTCTCGACGGCCATCGTAAACAGCCCTTCGCTTTTGCCCCTACAAACAATCGCCTGCGAGGAAACCGCTAGACAAGCGTACAGACGCAGCAATCGGCAGTCCATGTGTGACTCGAGCTGTTCTACTACGCCATCGCTCGCATTGCCGCCCTCTTCCTCGGTGCTGATGTGCACCATGATGCCCTACTCAGTGCTAAATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6872#1 ------------------------------------------------------------ consensus_6872#2 ------------------------------------------------------------ consensus_6872#0 ATCGAGCGGCAGCACACCTTAAAAAAGCTCCTTATTTTCGAGTTTTCTTGTATTCCCGTC 60 consensus_6872#1 ------------------------------------------------------------ consensus_6872#2 ------------------------------------------------------------ consensus_6872#0 ATGTTGCATAGTCTCATTTTATTTGTATGTGCGGTGAAATTTGTTTTTTCCTCTTATATT 120 consensus_6872#1 -----------------------------------------------------------T 1 consensus_6872#2 ------------------------------------------------------------ consensus_6872#0 TGTCTCTTTTGTAAGTAGATTTTCTATTGTTTCTATATTCTATCTATGTGTTGAACACAA 180 consensus_6872#1 GCAGGAAGGCAAGCTGTTTTCCACCTTCTACGGCACCACGGAGTACTGCAGTCCCGAGGT 61 consensus_6872#2 ------------------------------------------------------------ consensus_6872#0 ATGTGTACATATGTTGCCTTTTGTTCTGTTCGTGGCCATCTATTATCCCCGTAATAGTGG 240 consensus_6872#1 GTTGGCCGGGAACAAGTACGCCGGACCGGAGCTGGAAATGTGGTCCCTGGGCGTAACGCT 121 consensus_6872#2 ------------------------------------------------------------ consensus_6872#0 GCAATTTCGGGTTCTGTT--TCTGTTTTGTATTGTGTTTCGTCTTCGCTATCGTAATGGC 298 consensus_6872#1 GTATGTGCTGATGTTTTTCG--AAAATCCCTTCCTGGACATCGAG-GAAACGC--TAAAG 176 consensus_6872#2 ----------------------------------------CCGCGCGAAACGCA-TGCTG 19 consensus_6872#0 GATCTTCTTTGTGTGGCGAATTGTGATAAAGAAAAAGAGATTGTTTCAATTGTTGTCAAC 358 * ** * * consensus_6872#1 TCGGAACTGATCATAC---CGCAGGAGATCAGTCCCGAGCTGGAGTACGTGTTGCTGTCC 233 consensus_6872#2 CTGGAACGATATTGGC---CAAAGGAATTCAG----AATCT---CTCCCTACAGGAACCT 69 consensus_6872#0 TCAGATCCGGCCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACGGGCCGAAATGCAGCAA 418 ** * * * * * * ** * * consensus_6872#1 CTG-CTGGACAAGA---ACCCCAAAACGCGCATCACGATGAAGCAACTGATCTGCACGGA 289 consensus_6872#2 TCG-ACATGCAACA---ATCACAGCA-GTACAAT-CGATACCACCGCGGCAGTGTCTGGC 123 consensus_6872#0 CGGTCCGGACATCATGCGCTGCTGGGCATGGGCACGGATGCAGTTACCGCGATCGATCAA 478 * ** * * *** * * * consensus_6872#1 GTGGTTGACGCAAGAAATTAACCCAAGCGCATTCA-ACTTTGCCCACATAGTGCCCTGTG 348 consensus_6872#2 GTTATAGGTACAGGTAATT----CAAACGCTT----GCTACGCGTACGCAGAACACTCCG 175 consensus_6872#0 GTGCCAACGTCCACCAATCGTACGAAATGCGTTGATGGGATGGTGGTGAGCTACGGCGTA 538 ** * *** ** ** * * * consensus_6872#1 AACCGTACGAAG-TGAACCCGGAAAAGTACTTCAACGGCCAGATATACTCGAGTCAAACC 407 consensus_6872#2 TTCCTGTCGTTG-TGTC---------GTATTTTGGTGGTGGGTCTCAGGCTAATCCTTCC 225 consensus_6872#0 AAGCAAACGAAACTGCAGCAATACTACTGTAAAGATGAGCCGATGCATAATGATGAACAG 598 * ** ** * * * * * consensus_6872#1 GGTCTGTCCACCTCACCGCACAGCT-TATCGTTGGTGGATGATGAGGATGAAGGCGACGA 466 consensus_6872#2 CTCGTAAATATGTCCCCGGCCGACTGTGGTGGTGCTGG-TGGTGCAGATGGAAGTGGTAA 284 consensus_6872#0 GTAGTGGCAATGGTGCCTCAGAACA-AGCTGGAGGCGGTAGGAAAGGAAGAAGAGAACGA 657 * * ** * * * ** * ** * * * consensus_6872#1 TGAGGAGGAGGACGAGCCGCATGCTCACATAGACGATTCGTTTGTTGATCCGGATGAATT 526 consensus_6872#2 CATTGAG----TCGAATGCTATATCCATTTCCACGGC-CGCCAGCAGCAGCAGCAGCATT 339 consensus_6872#0 TCTCTTG---ATCGACACGGATTATGAAAATGATACCTTCGAAGAGGACATCGATGAACG 714 * *** ** * * * * * * * consensus_6872#1 GCAG-GACGATGACATTTGTCCATTGACGCACGACGACGAAAAGCTACCAGAACGATCAT 585 consensus_6872#2 CCCG-TTCAATG-----TGTTTCCGAATGTGTGT-----ACAAGC--CCAGTACGTTTGA 386 consensus_6872#0 TTAACGAAGGCTTTTTATGCGCAATAGTAGCTAACGAC-ACAGGTTGCAAGTACAAGGGC 773 ** * * * * ** ** consensus_6872#1 ACGAACTATGCAGTGGACGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAG-GAATT 644 consensus_6872#2 GTGTGATGT-CGTTGAACGTGCAGCCTCCCTGGTCGGTGCAACAGATGCCGAAA-GGATC 444 consensus_6872#0 CTTTTCTAT-CAATGCTTGTGAATAGTCATTTAGAGGAAGAAGGGGAGCAGTAGTAGAAG 832 * * * ** * * * ** * ** * * consensus_6872#1 CAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACC 704 consensus_6872#2 CCAAGAGTCGGCTCT------GTCTCGACGGCCATCGTAAACAGCCCT----TCGCTTTT 494 consensus_6872#0 AAGAGTAGAGTGTTATTATCGGTACTATTTCATTTTTGGCACAATCATACAGTTCGCATA 892 * *** * * consensus_6872#1 ACCGCG-GCAGTGTCTGGCGTTATAGGTACAGATCCGGTCAAGCAAGCGCGTGGAAAGAA 763 consensus_6872#2 GCCCCT-ACAAACAATCGCCT-----GCGAGGAAACCGCTAGACAAGCGTAC----AGAC 544 consensus_6872#0 GTCGCGCGTAAAGAGGCGCCATTCAGAAGTGAAACCAATTCAACAGTAAAGCAACAAATA 952 * * * ** * * ** * consensus_6872#1 GGGACAGCTAC--NGGCCGAAATGCAGCAACA-GCCCGGACATCATGCGCTGCTGGGCAT 820 consensus_6872#2 GCAGCAATCGG--CAGTCCATGTGTGACTCGA-GCTGTTCTACTACGCCATCGCTCGCAT 601 consensus_6872#0 ATCATAATCACAATGATAGTCAAGCAAACCCATGCTGTGGTGTAGCAAGTAAATTAGCAC 1012 * * * ** *** consensus_6872#1 GGGCACNGATGCAGT--TATCGCGATCGATCAAGTGCCAACGTCCNCCAT-CGTACGAAA 877 consensus_6872#2 TGCCGCCCTCTTCCT--CGGTGCTGATGTGCA--CCATGATGCCCTACTC-AGTGCTAAA 656 consensus_6872#0 AATTGCTGTGGCCGTGGTGTTATAGAGAAATAGGGGGCG-CGTCTGCAATACAAATAGAA 1071 * * * * * ** consensus_6872#1 TGCGTTGATG-------------------------------------------------- 887 consensus_6872#2 TAG--------------------------------------------------------- 659 consensus_6872#0 CACGCTGTTTCTACTCTTATCTTTTTAACCGTCGCTGAAAACATGTCCTACGTTACATAG 1131 consensus_6872#1 ------------------------------------------------------------ consensus_6872#2 ------------------------------------------------------------ consensus_6872#0 AAGAGAAATAATTTAATACCGTTGTTACAAGCCTCTGAGGAGGGGAGAGCAGAAAGGTAA 1191 consensus_6872#1 ----------- consensus_6872#2 ----------- consensus_6872#0 AGAGATGTATA 1202 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||