These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 996 fasta sequence [AATCCCCGAGGTTAGAAGAACAGACGGTCGATCAGATCTCGGCAATTGGGCGAACTTTATGCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAAGCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGT--TCGATAAAATTAACGAAGTTTGCTCGACGGCCTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAAAATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGAGTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAGGACGCCTATCAGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGC-GGCGCTCCGGATCCGTAGCCGTCGGTACATTTAAGCTATCGATTTCCGGAGCGATCTGCGTCTGCTGGTAGCATCTCTGGATAGGTTTGGCATTCTTGAGCCTGGAAAGAGCGCGC] [+] EMBL AL695532 [AATCCCCGAGGTTAGAAGAACAGACGGTCGATCAGATCTCGGCAATTGGGCGAACTTTATGCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAAGCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGT TCGATAAAATTAACGAAGTTTGCTCGACGG CTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAAAATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGAGTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTATGGGAGTGGATAAAGGACGCCTATCTGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAG ] [+] EMBL BM652868 [ ccgccCACGCGTCCGCGATAAAATTAACGAAGTTTGCTCGACGGCCTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAAAATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGAGTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAGGACGCCTATCAGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGGCGCTCCGGATCCGTAGCCGTCGGTACATTTAAGCTATCGATTTC ] [+] EMBL BX612027 [ CGACGGCCTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAAAATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGAGTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAGGACGCCTATCAGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCTGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGC GGCGCTCCGGATCCGTAGCCGTCGGTACATTTAAGCTATCGATTTCCGGAGCGATCTGCGTCTGCTGGTAGCATCTCTGGATAGGTTTGGCATTCTTGAGCCTGGAAAGAG ] [+] EMBL BX611225 [ GTACGGGAGTGGATAAAGGACGCCTATCAGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGC GGCGCTCCGGATCCGTAGCCGTCGGTACATTTAAGCTATCGATTTCCGGAGCGATCTGCGTCTGCTGGTAGCATCTCTGGATAGGTTTGGCATTCTTGAGCCTGGAAAGAGCGCGC] consensusID : consensus_6873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [ATCGCCCCANGTTAATACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAAGGACGCCTATCTGGCCTTAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGCGCTCCGGA] [+] EMBL AL695788 [ATCGCCCCANGTTAATACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAAGGACGCCTATCTGGCCTTAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGCGCTCCGGA] consensusID : consensus_6873#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [ACGGCACGAGGCTGAATAGCAAGCTAACGACACTGACCGGGGAGTTTGGCGACATGCGTACGGCACACGAGCAGCTACTGTTCAATGGCAATGAAATCGTGCGCCACTGTACCGAGTCGAGCGATCGGACGGCCACGCAGGCCAACATGGATCAGCTTACGCACGAGCTGGACAAAACGATCGCGCTGATCGAGCAGAAGAACCAGACGGTCGATCAGATCCTCGGCAATTGGGCGAACTTTATGCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAAGCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGTTCGATAAAATTAACGAAGTTTGCTCGACGGCCTA] [+] EMBL BX619482 [ACGGCACGAGGCTGAATAGCAAGCTAACGACACTGACCGGGGAGTTTGGCGACATGCGTACGGCACACGAGCAGCTACTGTTCAATGGCAATGAAATCGTGCGCCACTGTACCGAGTCGAGCGATCGGACGGCCACGCAGGCCAACATGGATCAGCTTACGCACGAGCTGGACAAAACGATCGCGCTGATCGAGCAGAAGAACCAGACGGTCGATCAGATCCTCGGCAATTGGGCGAACTTTATGCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAAGCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGTTCGATAAAATTAACGAAGTTTGCTCGACGGCCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6873#0 AATCCCCGAGGTTAGAAGAACAGACGGTCGATCAGATCTCGGCAATTGGGCGAACTTTAT 60 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#0 GCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAA 120 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#0 GCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGT 180 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#0 TGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGTTCGATAAAAT 240 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#0 TAACGAAGTTTGCTCGACGGCCTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAA 300 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#0 AATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGA 360 consensus_6873#1 -------------------------------------------------------ATCGC 5 consensus_6873#2 ------------------------------------------------------------ consensus_6873#0 GTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAA-GGACGCCTAT- 418 consensus_6873#1 CCCANGTTAATACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAAGGACGCCTAT- 64 consensus_6873#2 ----------------------------ACGGCACGAGGCTGAATAGCAAGCTAACGACA 32 * * *** * ** *** * * * consensus_6873#0 CAGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTG 478 consensus_6873#1 CTGGCCTT-AATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTG 123 consensus_6873#2 CTGACCGGGGAGTTTGGCGACATGCGTA------CGGCACACGAGCAGCTAC-TGTTCAA 85 * * ** * * ****** ** * ** * *** ***** * * * consensus_6873#0 GAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAG 538 consensus_6873#1 GAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAG 183 consensus_6873#2 TGGCA-ATGAAATCGTGCGCCACTGTACCGAGTCGAGCGATCGGACGGCCACGCAGGCCA 144 *** *** ** * * * * * ** * ** * * * * consensus_6873#0 CTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGC 598 consensus_6873#1 CTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGC 243 consensus_6873#2 ACATGGATCAGCTTACGCACGAGC----TGGACAAAACGATCGCGCTGATCGAGCAGAAG 200 * ** *** * * * * *** * * ** ***** ***** consensus_6873#0 GGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAG 658 consensus_6873#1 GGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAG 303 consensus_6873#2 AACCAGAC------GGTCGATC-AGATCCTCGGCAATTGGGCGAACTTTATGCGGCT--- 250 ** *** ** *** * ** * * * *** ** * * ** * consensus_6873#0 AACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGG 718 consensus_6873#1 AACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGG 363 consensus_6873#2 ------------GTACCAGTCCG--TGGTGGACTGGTCGATCAAGATACGGGCGCTGCTG 296 * * ** ** * * ** *** * **** * * * * * * consensus_6873#0 CAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACG 778 consensus_6873#1 CAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACG 423 consensus_6873#2 GAGCGCA------------AGCTGCAGCT---GAACACGCTGCACGAGGCACAGCAAGCC 341 **** * *** ****** *** * * ** ** * consensus_6873#0 GGCGATAGTGAA--AAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCC 836 consensus_6873#1 GGCGATAGTGAA--AAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCC 481 consensus_6873#2 TGCCAGAATTATTCGGGCGCAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAG--CG 399 ** * * * * ** * * * * *** *** * ** *** * * consensus_6873#0 AGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGCGCTCCGGATCCGT 896 consensus_6873#1 AGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGCGCTCCGGA----- 536 consensus_6873#2 AAATGAATCACGAGTTCGATAAAATTAA-CGAAGTTTGCTCGACGGCCTA---------- 448 * ******** * ***** ** ** * *** * **** consensus_6873#0 AGCCGTCGGTACATTTAAGCTATCGATTTCCGGAGCGATCTGCGTCTGCTGGTAGCATCT 956 consensus_6873#1 ------------------------------------------------------------ consensus_6873#2 ------------------------------------------------------------ consensus_6873#0 CTGGATAGGTTTGGCATTCTTGAGCCTGGAAAGAGCGCGC 996 consensus_6873#1 ---------------------------------------- consensus_6873#2 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||