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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1069 fasta sequence
[AGAATCCCCGAGGTTATGGTCACGCGTTCGTCGTTTGCTGGCGCTCAAGTCTTTCGTTTCTGCTCGCTTGTCCGTCTACGATCGGCTGACATTTACTTGGAGAAAAAGGTTCTTTCTCAAGTGTACAAACAATACCTCATTTAACGTGTGTGATCACACCCAACACTCCCGGTTACCATCATGGGCAAGGTCGTGGTACTAGTTCTCAGCATCATTATCGGTCTAGCTACCAACAGGCGATGGCAAAGGACAAAACACATCAAGTACACCGAAAAAGATCTGNTACGAAAGTCGATCGTGTACGACCAAAAACACGCCCGATGTCTTCTACTGGCCCGTGAACNAACCCACCGGAATGGATAAGATGATCGTGAGATCTCGTCCGGTACACCAAGCTCTGCGAGCACGAGGGAAAACCGGTGCCAGCGCATTACAAATCTGACTGNTACAATGATGTCGACGAGTCGAACTAAGCATTGCAAGGAGAAGTACAGAATAATGAAGCGTCTGAATCCGGCCGGTAGTGACGCTCCGTTCAATGGACCAGCGTATGAGCAGATTCTATGGACATGGGATGACGATATGAAGCGCCATCAAGTCGAAGAAACATTAACCTGACGATCGGGCTTGATCGACCGCTTGCTGTGCCGANTNCGACGGCCATGATCGCTNTCTGNTCGCTATGCCACTATTTTAACCCAAAACATCCTTACGATACAAAACAGTCCCTGGAGTGATTCNCGATATTGACGCANGGACACTATACTGAAGCCCGTNCGAGAATTAACACACCCAGTGGGCATTTNGGCTGGCAAATCTCGGAAACGAGTGGCCAGCGATTGGCACACATTTNACCGACAGGAATNGACACAGGGGGTACANNANTATNNCCAAGGATAGGANATAAGTTACANAGAAACGATTAACAATTTGTTACCCCTTTAAAGTGGCGTATAGGACTACAGAGATANAGGAAGATAAAGATAGATGGTANAGGAAAACCAANGGTAATGGTNGGAACAGTATACGTTGGTTATTGGGACGTAGGATAAGNACGGAAAATTGGTTA]
[+] EMBL AL697310 [AGAATCCCCGAGGTTATGGTCACGCGTTCGTCGTTTGCTGGCGCTCAAGTCTTTCGTTTCTGCTCGCTTGTCCGTCTACGATCGGCTGACATTTACTTGGAGAAAAAGGTTCTTTCTCAAGTGTACAAACAATACCTCATTTAACGTGTGTGATCACACCCAACACTCCCGGTTACCATCATGGGCAAGGTCGTGGTACTAGTTCTCAGCATCATTATCGGTCTAGCTACCAACAGGCGATGGCAAAGGACAAAACACATCAAGTACACCGAAAAAGATCTGNTACGAAAGTCGATCGTGTACGACCAAAAACACGCCCGATGTCTTCTACTGGCCCGTGAACNAACCCACCGGAATGGATAAGATGATCGTGAGATCTCGTCCGGTACACCAAGCTCTGCGAGCACGAGGGAAAACCGGTGCCAGCGCATTACAAATCTGACTGNTACAATGATGTCGACGAGTCGAACTAAGCATTGCAAGGAGAAGTACAGAATAATGAAGCGTCTGAATCCGGCCGGTAGTGACGCTCCGTTCAATGGACCAGCGTATGAGCAGATTCTATGGACATGGGATGACGATATGAAGCGCCATCAAGTCGAAGAAACATTAACCTGACGATCGGGCTTGATCGACCGCTTGCTGTGCCGANTNCGACGGCCATGATCGCTNTCTGNTCGCTATGCCACTATTTTAACCCAAAACATCCTTACGATACAAAACAGTCCCTGGAGTGATTCNCGATATTGACGCANGGACACTATACTGAAGCCCGTNCGAGAATTAACACACCCAGTGGGCATTTNGGCTGGCAAATCTCGGAAACGAGTGGCCAGCGATTGGCACACATTTNACCGACAGGAATNGACACAGGGGGTACANNANTATNNCCAAGGATAGGANATAAGTTACANAGAAACGATTAACAATTTGTTACCCCTTTAAAGTGGCGTATAGGACTACAGAGATANAGGAAGATAAAGATAGATGGTANAGGAAAACCAANGGTAATGGTNGGAACAGTATACGTTGGTTATTGGGACGTAGGATAAGNACGGAAAATTGGTTA]
consensusID : consensus_6877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 710 fasta sequence
[CCGTGTCTGTCGGCGAGGGTACACGCGTTCGTCGTTTGCTGGCGCTCAAGTCTTTCGTTTCTGCTCGCTTGTCCGTCTACGATCGGCTGACATTTACTGGAGAAAAAGATTCTTTCTCAAGCGTACAAACAATACCTCATTTAACGTGTGTGATCACACCCAACACACCCGGTTACCATCATGGGCAAGGTCGTGGTACTAGTTCTCAGCATCATTATCGGTCTAGCTACCCAGCAGGCGATGGCAAAGGAAAAACACATCAAGTACACTGAAAAAGATCTGCTACGAAAGTCGATCGTGTACGACAAAAACACGCCCGATGTCTTCTACTGCCCCG-TGAACAAACCCACCGGAATGGATAAGATGATCGTGAGATCTCGTCCGCTACACAAGCTCTGCGAGCACGAGGGAAAACCGCTGCCAGCGCATTACAAATCTGACTGCTACAATGATGTCGACGAGTCGAACTACGCATGCAAGGAGAAGTACAGAATAATGAAACGTTTCGCCAAAGATAATGTTGAGATCTAAACAGACATCCTCGGTCATATGATCTCCGACTTCGAATTTCTCGTGCAAGCGATTACAATGACTTAACGTTCTGACTTTACTTGCGCTACTGAAGTTTTACTAGAAATTGTTACAAACTGCATAGAACTTTAGAACGATTTTTATACTTAATTTCTTTATTTGAATTCTATCCTTTCCAA]
[+] EMBL BM592143 [CCGTGTCTGTCGGCGAGGGTACACGCGTTCGTCGTTTGCTGGCGCTCAAGTCTTTCGTTTCTGCTCGCTTGTCCGTCTACGATCGGCTGACATTTACTGGAGAAAAAGATTCTTTCTCAAGCGTACAAACAATACCTCATTTAACGTGTGTGATCACACCCAACACACCCGGTTACCATCATGGGCAAGGTCGTGGTACTAGTTCTCAGCATCATTATCGGTCTAGCTACCCAGCAGGCGATGGCAAAGGAAAAACACATCAAGTACACTGAAAAAGATCTGCTACGAAAGTCGATCGTGTACGACAAAAACACGCCCGATGTCTTCTACTGCCCCG TGAACAAACCCACCGGAATGGATAAGATGATCGTGAGATCTCGTCCGCTACACAAGCTCTGCGAGCACGAGGGAAAACCGCTGCCAGCGCATTACAAATCTGACTGCTACAATGATGTCGACGAGTCGAACTACGCATGCAAGGAGAAGTACAGAATAATGAAACGTTTCGCCAAAGATAATGTTGAGATCTAAACAGACATCCTCGGTCATATGATCTCCGACTTCGAATTTCTCGTGCAAGCGATTACAATGACTTAACGTTCTGACTTTACTTGCGCTACTGAAGTTTTACTAGAAATTGTTACAAACTGCATAGAACTTTAGAACGATTTTTATACTTAATTTCTTTATTTGAATTCTATCCTTTCCAA]
[+] EMBL BM618604 [ ccGCGAGGGTACACGCGTTCGTCGTTTGCTGGCGCTCAAGTCTTTCGTTTCTGCTCGCTTGTCCGTCTACGATCGGCTGACATTTACTGGAGAAAAAGATTCTTTCTCAAGCGTACAAACAATACCTCATTTAACGTGTGTGATCACACCCAACACACCCGGTTACCATCATGGGCAAGGTCGTGGTACTAGTTCTCAGCATCATTATCGGTCTAGCTACCCAGCAGGCGATGGCAAAGGAAAAACACATCAAGTACACTGAAAAAGATCTGCTACGAAAGTCGATCGTGTACGACAAAAACACGCCCGATGTCTTCTACTGCCCCG TGAACAAACCCACCGGAATGGATAAGATGATCGTGAGATCTCGTCCGCTACACAAGCTCTGCGAGCACGAGGGAAAACCGCTGCCAGCGCATTACAAATCTGACTGCTACAATGATGTCGACGAGTCGAACTACGCATGCAAGGAGAAGTACAGAATAATGAAACGTTTCGCCAAAGATAATGTTGAGATCTAAACAGACATCCTCGGTCATATGATCTCCGACTTCGAATTTCTCGTGCAAGCGATTACAATGACTTAACGTTCTGACTTTACTTGCGCTACTGAAGTTTTACTAGAAATTGTTACAAACTGCATAGAACTTTAGAACGATTTTTATACTTAATTTCTTTATTTGAATTCTATCCTT ]
[+] EMBL AL932488 [ gagtCATNATTATCGGTCTA CTACCCA CAGGCGATGGC AAGGAAAAACACATNAAGTACACCGAAAAAGATCTG TACGAAAGTCGATCGTGTACGACAAAAACAg ]
[+] EMBL BM599070 [ ATCTGCTACGAAAGTCGATCGTGTACGACAAAAACACACCCGATGTCTTCTACTGCCCCGTTGAACAAACCCACCGGAATGGATAAGATGATCGTGAGGTCTCGTCCGCTTCACAAGCTCTGCGAGCACTAGGGAAAACCGCTGCCAACGCAT ]
consensusID : consensus_6877#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[TCCCGCAGGTTAAACCTGCTGCTTAAACGCCAGCCTAAAGCATTACACGGGAAATTGGAGGCCTATACACGAGAAGAAGCGTCTGAATCCGCCCGGTAGTGACGCTCCGTTCAATGGACAGCGTTTGAGCAGATTTATGGACATGGATGACGATATGAAGCGCATCAAGTCGAAGAAACATTAACCTGACGATCGGGCTGATCGACCGTTGCTGTGCGATTCGACGGCATGATCGCTTCTGCTCGCTATGCCATATTTTAACAAAACATCCTTACGATACAACCAGTCCCGGAGGATTCGTTTGAGGAAGGACACTTACTGACCCTCGCACTAAAACAGGGATTGCTGAATTGAAGTGCAGGATGGAAATTCGCGAAGAAAGGGTAGTTTTCAGTGATATTAGACTACATTTCCCTAGGGAAGCACGTTTTATAGTNGTTGAACAGTTATGTTGAATAGTGTATGCTGTAAAGAATGTNTAGCGAAAACAAAAAACATAATNTTTGCTACGA]
[+] EMBL AL695567 [TCCCGCAGGTTAAACCTGCTGCTTAAACGCCAGCCTAAAGCATTACACGGGAAATTGGAGGCCTATACACGAGAAGAAGCGTCTGAATCCGCCCGGTAGTGACGCTCCGTTCAATGGACAGCGTTTGAGCAGATTTATGGACATGGATGACGATATGAAGCGCATCAAGTCGAAGAAACATTAACCTGACGATCGGGCTGATCGACCGTTGCTGTGCGATTCGACGGCATGATCGCTTCTGCTCGCTATGCCATATTTTAACAAAACATCCTTACGATACAACCAGTCCCGGAGGATTCGTTTGAGGAAGGACACTTACTGACCCTCGCACTAAAACAGGGATTGCTGAATTGAAGTGCAGGATGGAAATTCGCGAAGAAAGGGTAGTTTTCAGTGATATTAGACTACATTTCCCTAGGGAAGCACGTTTTATAGTNGTTGAACAGTTATGTTGAATAGTGTATGCTGTAAAGAATGTNTAGCGAAAACAAAAAACATAATNTTTGCTACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6877#0 -AGAATCCCCGAGGTTATGGTCACGCGTTCGTCGTTTGCTGGCGCTCAAGTCTTTCGTTT 59
consensus_6877#1 CCGTGTCTGTCGGCGAGGGTACACGCGTTCGTCGTTTGCTGGCGCTCAAGTCTTTCGTTT 60
consensus_6877#2 ------------------------------------------------------------
consensus_6877#0 CTGCTCGCTTGTCCGTCTACGATCGGCTGACATTTACTTGGAGAAAAAGGTTCTTTCTCA 119
consensus_6877#1 CTGCTCGCTTGTCCGTCTACGATCGGCTGACATTTACT-GGAGAAAAAGATTCTTTCTCA 119
consensus_6877#2 -----------------------------------TCCCGCAGGTTAAACCTGCTGCTTA 25
* * ** ** * * ** *
consensus_6877#0 AGTGTACAAACAATACCTCATTTAACGTGTGTGATCACACCCAACACTCCCGGTTACCAT 179
consensus_6877#1 AGCGTACAAACAATACCTCATTTAACGTGTGTGATCACACCCAACACACCCGGTTACCAT 179
consensus_6877#2 AACGCCAGCCTAAAGCATTACACGGGAAATTGGAGGCCTATACACGAGAAGAAGCGTCTG 85
* * ** * * * * ** * ** *
consensus_6877#0 CATGGGCAAGGTCGTGGTACTAGTTCTCAGCATCATTATCGGTCTAGCTACC-AACAGGC 238
consensus_6877#1 CATGGGCAAGGTCGTGGTACTAGTTCTCAGCATCATTATCGGTCTAGCTACCCAGCAGGC 239
consensus_6877#2 AATCCGCCCGGTAGTGACGCTCCGTTCAATGGACAGCGTTTGAGCAGATTTATGGACATG 145
** ** *** *** ** * * ** * * ** *
consensus_6877#0 GATGGCAAAGGACAAAACACATCAAGTACACCGAAAAAGATCTGNTACGAAAGTCGATCG 298
consensus_6877#1 GATGGCAAAGGA-AAAACACATCAAGTACACTGAAAAAGATCTGCTACGAAAGTCGATCG 298
consensus_6877#2 GATGACGATATG--AAGCGCATCAAGT----CGAAGAAACATTAACCTGACGATCGGGC- 198
**** * * ** * ******** *** ** * ** *** *
consensus_6877#0 TGTACGACCAAAAACACGC---CCGATGTCTTCTACTGGCCCGTGAACNAACCCACCGGA 355
consensus_6877#1 TGTACGAC-AAAAACACGC---CCGATGTCTTCTACTGCCCCGTGAACAAACCCACCGGA 354
consensus_6877#2 TGATCGACCGTTGCTGTGCGATTCGACGGCATGATCGCTTCTGCTCGCTATGCCAT--AT 256
** **** ** *** * * * * * * * * ***
consensus_6877#0 ATGGATAAGATGATCGTGAGATCTCGTCCGGTACACCAAGCTCTGCGAGCACGAGGGAAA 415
consensus_6877#1 ATGGATAAGATGATCGTGAGATCTCGTCCGCTACAC-AAGCTCTGCGAGCACGAGGGAAA 413
consensus_6877#2 TTTAACAAAACATCCTTACGATACAACCAGTCCCGG-AGGATTCGTTTG-AGGAAGGACA 314
* * ** * * * *** * * * * * * * * * ** *** *
consensus_6877#0 ACCGGTG-CCAGCGCATTACAAATCTGACTGNTACAATGATGTCGACGAGTCGAACTAAG 474
consensus_6877#1 ACCGCTG-CCAGCGCATTACAAATCTGACTGCTACAATGATGTCGACGAGTCGAACTACG 472
consensus_6877#2 CTTACTGACCCTCGCACTAAAACAGGGATTGCTGAATTGAAGT-GCAGGATGGAAATTCG 373
** ** **** ** ** ** ** * * *** ** * * * *** * *
consensus_6877#0 CATTGCAAGGAGAAGTA-CAG-AATAATGAA--GCGTCTGAATCCGGCCGGTAGTGACGC 530
consensus_6877#1 CAT-GCAAGGAGAAGTA-CAG-AATAATGAA--ACGTTTC------GCCAAAGATAATGT 521
consensus_6877#2 CGAAGAAAGGGTAGTTTTCAGTGATATTAGACTACATTTC---CCTAGGGAAGCACGTTT 430
* * **** * * *** *** * * * * *
consensus_6877#0 TCCGTTCAATGGACCAGCGTATGAGCAGATTCTATGGACATGGGATGACGATATGAAGCG 590
consensus_6877#1 TGAGATC--TAAACAGACATCC---TCGGTCATATGATCTCCGACTTCGAATTTCTCGTG 576
consensus_6877#2 TATAGTNGTTGAACAGTTATGT---TGAATAGTGTATGCTGTAAA---GAATGTNTAGCG 484
* * * ** * * * * * ** * * *
consensus_6877#0 CCATCAAGTCGAAGAAACATTAACCTGACGATCGGGCTTGATCGAC-CGCTTGCTGTGCC 649
consensus_6877#1 CAAGCGATT-------ACAATGACTTAACGTTCTGACTTTACTTGCGCTACTGAAGTTTT 629
consensus_6877#2 AAAACAAAA-------AACATAATNTT-TGCTACGA------------------------ 512
* * * * * * * * * *
consensus_6877#0 GANTNCGACGGCCATGATCGCTNTCTGNTCGCTATGCCACTATTTTAACCCAAAACATCC 709
consensus_6877#1 ACTAGAAATTGTTACAA--ACTGCATAGA-ACTTTAGAACGATTTTTATACTTAATTTCT 686
consensus_6877#2 ------------------------------------------------------------
consensus_6877#0 TTACGATACAAAACAGTCCCTGGAGTGATTCNCGATATTGACGCANGGACACTATACTGA 769
consensus_6877#1 TTAT--TTGAATTCTATCCTTTCCAA---------------------------------- 710
consensus_6877#2 ------------------------------------------------------------
consensus_6877#0 AGCCCGTNCGAGAATTAACACACCCAGTGGGCATTTNGGCTGGCAAATCTCGGAAACGAG 829
consensus_6877#1 ------------------------------------------------------------
consensus_6877#2 ------------------------------------------------------------
consensus_6877#0 TGGCCAGCGATTGGCACACATTTNACCGACAGGAATNGACACAGGGGGTACANNANTATN 889
consensus_6877#1 ------------------------------------------------------------
consensus_6877#2 ------------------------------------------------------------
consensus_6877#0 NCCAAGGATAGGANATAAGTTACANAGAAACGATTAACAATTTGTTACCCCTTTAAAGTG 949
consensus_6877#1 ------------------------------------------------------------
consensus_6877#2 ------------------------------------------------------------
consensus_6877#0 GCGTATAGGACTACAGAGATANAGGAAGATAAAGATAGATGGTANAGGAAAACCAANGGT 1009
consensus_6877#1 ------------------------------------------------------------
consensus_6877#2 ------------------------------------------------------------
consensus_6877#0 AATGGTNGGAACAGTATACGTTGGTTATTGGGACGTAGGATAAGNACGGAAAATTGGTTA 1069
consensus_6877#1 ------------------------------------------------------------
consensus_6877#2 ------------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||