These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1856 fasta sequence [CCCACAGAGCACAGGAGCGGCGCATGCCCGTAATTGTCGGTTGTTTGCAATAGTAATTGATGCATTAGCTAGGAATATTTCCATCGTTGAAAAGTATAAGCGTTTAGTTCAACCAATCCCCCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGCCGCAAACGACGATGAAGCCGAACGAAGAAGCAGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATTAAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTCACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTCCAGGTAGCCGGTTCCACGCTGGAAGCATCGACCAAGGTGTACGGGCTGCGGGTCGACTCCGTGCACACGGACGTCATGCGCATGTGCTCGGAGCTGACGCGTCAAACGGCGCGCGCCATGAACAACAATGCCGCCGACCAGGACGACGAGGAGGCGGGAGGCGAAGGCAATGCGGGCGACCAGTCGATGGCCGAGGGTGGCGAAGGGGGCGGCAACAAGGAGAACGAGCAGACCGTCACCCAGCAGCCGAAGAAGGGAAGAAGCGCACCCGCAAGGTGGTCAGCACGATCACGAAATCGAAAGACTCGATCAACGGTCCGCTGGACACGAACCCGTTCATGGATCCGTTCTTCGCCGAGCTGAACTCGGTCGTCGGTGACGTGAACAGCTCGAGCCGGCTGATGCAGAACATCGTGCCGACGAAGCAGTCGGAGCTGCGGCTCGGCATGGACTACGCGTTCTGGGATCGGCGCCATCGCCGAGCTCGATCTGGACGGCGTGCCGGAAGCGTACGAGGGGCTGGAATGCAGCACGATGCGCTTTTTGCCCCTCGGGCCGAACAATTCTGTGCGCACGCTACGTTCCGGCTACCTCATCACGGACGCACCGGCCGAGGCTGACGAGGACGAGGAGGACGCCCGCACCAACCGGACCTCGCTCGACGCGCACATGGACGATGTGGAGGCACGCGATCACAGCGCGGCGCTGCTGAACCGGTCCGCGCTGGACGTACACTTTGACATCAACGCGGAGGTGGAACCGGTACCGTCCGGTGACGCGTTCATACTTGACTACGATGCGAAGGACATCGACGGCAACGACGACTTTGCGGAGGATGACGAGCTGGCGCTGGAACAGTGCAAGGGGCTGATGCGCAAAACGGTGGTGATCGAGGATATGCG-GCCGCTCGATACGACCAGCTCGCATCTGGAGTACTCGTACCGGCCGCTCGACAACATTTCGCAGTTTTGGGCCGGTCCGGCGCACTGGAAGTTCAAGCGCTCGATGCGACCCCGCTCGACGATGGCCCCGCCGCCCAGCGATACGGCCTCGCAAACGTCATCGACCACGGCGAAGGGACGAGCGGTGGGACGGCGTAAGAAAACGTTCGAACCGGACACGCTGGACGATGTGCTGAGCGTGACGGAGACTCTGTTCCAGGAGTACAACCCCAACCGGCCGATCAGGGGCATCACGCATCTGAAGAGTTTGGTGTGCAAGAAGTGGGAGTCGAAAAAGCTGAAGCTGCCCACCGATTACAAGATCGATCCGAAGCGGTTCGATCTGTACAAGTACGCCCGGGGGTTGAGCATGCCGGACTACGGGGCCCCGAACCACGCACCGTCGGAGGAGTACAACTGTGACGGTGGAGACGATCAGATTTCCTGCAGCAATGACACGAACGATGGCGGTGATAATGACATGAGCCCCCCATG] [+] EMBL CNS09R4O [CCCACAGAGCACAGGAGCGGCGCATGCCCGTAATTGTCGGTTGTTTGCAATAGTAATTGATGCATTAGCTAGGAATATTTCCATCGTTGAAAAGTATAAGCGTTTAGTTCAACCAATCCCCCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGCCGCAAACGACGATGAAGCCGAACGAAGAAGCAGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATTAAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTCACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTCCAGGTAGCCGGTTCCACGCTGGAAGCATCGACCAAGGTGTACGGGCTGCGGGTCGACTCCGTGCACACGGACGTCATGCGCATGTGCTCGGAGCTGACGCGTCAAACGGCGCGCGCCATGAACAACAATGCCGCCGACCAGGACGACGAGGAGGCGGGAGGCGAAGGCAATGCGGGCGACCAGTCGATGGCCGAGGGTGGCGAAGGGGGCGGCAACAAGGAGAACGAGCAGACCGTCACCCAGCAGCCGAAGAAGGGAAGAAGCGCACCCGCAAGGTGGTCAGCACGATCACGAAATCGAAAGACTCGATCAACGGTCCGCTGGACACGAACCCGTTCATGGATCCGTTCTTCGCCGAGCTGAACTCGGTCGTCGGTGACGTGAACAGCTCGAGCCGGCTGATGCAGAACATCGTGCCGACGAAGCAGTCGGAGCTGCGGCTCGGCATGGACTACGCGTTCTGGGATCGGCGCCATCGCCGAGCTCGATCTGGACGGCGTGCCGGAAGCGTACGAGGGGCTGGAATGCAGCACGATGCGCTTTTT ] [+] EMBL CNS092NH [ AATTGTCGGTTGTTTGTAATAGTAATTGATGCATTAGCTAGGAATATTTCGATCGTTGAAAAGTATAAGAGTTTAGTTCAACCAATCCCCCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGCTGCAAACGACGATGAAGCCGAACGAAGAAGCAGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATTAAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAA ] [-] EMBL CNS09R4P [ ATCTGGACGGCGTGCCGGAAGCGTACGAGGGGCTGGAATGCAGCACGATGCGCTTTTTGCCCCTCGGGCCGAACAATTCTGTGCGCACGCTACGTTCCGGCTACCTCATCACGGACGCACCGGCCGAGGCTGACGAGGACGAGGAGGACGCCCGCACCAACCGGACCTCGCTCGACGCGCACATGGACGATGTGGAGGCACGCGATCACAGCGCGGCGCTGCTGAACCGGTCCGCGCTGGACGTACACTTTGACATCAACGCGGAGGTGGAACCGGTACCGTCCGGTGACGCGTTCATACTTGACTACGATGCGAAGGACATCGACGGCAACGACGACTTTGCGGAGGATGACGAGCTGGCGCTGGAACAGTGCAAGGGGCTGATGCGCAAAACGGTGGTGATCGAGGATATGCG GCCGCTCGATACGACCAGCTCGCATCTGGAGTACTCGTACCGGCCGCTCGACAACATTTCGCAGTTTTGGGCCGGTCCGGCGCACTGGAAGTTCAAGCGCTCGATGCGACCCCGCTCGACGATGGCCCCGCCGCCCAGCGATACGGCCTCGCAAACGTCATCAACCACGGCGAAGGGACGAGCGGTGGGACGGCGTAAGAAAACGTTCGAACCGGACACGCTGGACGATGTGCTGAGCGTGACGGAGACTCTGTTCCAGGAGTACAACCCCAACCGGCCGATCAGGGGCATCACGCATCTGAAGAGTTTGGTGTGCAAGAAGTGGGAGTCGAAAAAGCTGAAGCTGCCCACCGATTACAAGATCGATCCGAAGCGGTTCGATCTGTACAAGTACGCCCGGGGGCTTAGCATGCCGGACTACGGGGCCCCGAACCACGCACCGTCGGAGGAGTACAACTGTGACGGTGGAGACGATCAGATTTCCTGCAGCAATGACACGAACGATGGCGGTGATAATGACATGAGCCCCCCATG] [-] EMBL CNS09B7F [ cTGATCGAGGATATGCGCGCCGCTCGATACGACCAGCTCGCATCTGGAGTACTCGTACCGGCCGCTCGACAACATTTCGCAGTTTTGGGCCGGTCCGGCGCACTGGAAGTTCAAGCGCTCGATGCGACCCCGCTCGACGATGGCCCCGCCGCCCAGCGATACGGCCTCGCAAACGTCATCGACCACGGCGAAGGGACGAGCGGTGGGACGGCGTAAGAAAACGTTCGAACCGGACACGCTGGACGATGTGCTGAGCGTGACGGAGACTCTGTTCCAGGAGTACAACCCCAACCGGCCGATCAGGGGCATCACGCATCTGAAGAGTTTGGTGTGCAAGAAGTGGGAGTCGAAAAAGCTGAAGCTGCCCACCGATTACAAGATCGATCCGAAGCGGTTCGATCTGTACAAGTACGCCCGGGGGTTGAGCATGCCGGACTACGGGGCCCCGAACCACGCACCGTCGGAGGAGTACAACTGTGACGGTGGAGACGATCAGATTTCCTGCAGCAATGACACGAACGATGGCGGTGATAATGACATGA ] [-] EMBL CNS092NI [ TCGACCACGGCGAAGGGACGAGCGGTGGGACGGCGTAAGAACACGTTCGAACCGGACACGCTGGACGATGTGCTGAGCGTGACGGAGACTCTGTTCCAGGAGTACAACCCCAACCGGCCGATCAGGGGCATCACGCATCTGAAGAGTTTGGTGTGCAAGAAGTGGGAGTCGAAAAAGCTGAAGCTGCCCACCGATTACAAGATCGATCCGAAGCGGTTCGATCTGTACAAGTACCCCCGGGGGTTGAGCATGCCGGACTACGGGGCCCCGAACCACGCACCGTCGGAGGAGTACAACTGTGACGGTGGAGACGATCAGATTTCCTGCAGCAATGACACGAACGATGGCGGTGATAATGACA ] consensusID : consensus_6880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [AACCAATCCACCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGTAAACACGACCCGGGAGGGTGGCGTCTGTTTTTTTTATCGCACATCGCTGTGTGTTTACAAAACGCATTAAACCCGTTTCACATTTTTAGGCTGCAAACGACGATGAAGCCGAACGAAGAAGCAGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATTAAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTCACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTCCAGGTAGCCGGTTCCACGCTGGAAGCATCAACCAAGGTGTACGGGCTGCGGGTCGACTCCGTGCACACGGACGTCATGCGCATGTGCTCTGAGCAG] [+] EMBL CNS09B7E [AACCAATCCACCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGTAAACACGACCCGGGAGGGTGGCGTCTGTTTTTTTTATCGCACATCGCTGTGTGTTTACAAAACGCATTAAACCCGTTTCACATTTTTAGGCTGCAAACGACGATGAAGCCGAACGAAGAAGCAGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATTAAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTCACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTCCAGGTAGCCGGTTCCACGCTGGAAGCATCAACCAAGGTGTACGGGCTGCGGGTCGACTCCGTGCACACGGACGTCATGCGCATGTGCTCTGAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6880#0 CCCACAGAGCACAGGAGCGGCGCATGCCCGTAATTGTCGGTTGTTTGCAATAGTAATTGA 60 consensus_6880#1 ----------AACCAATCCACCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGG 50 * * * * **** * * * ** *** * consensus_6880#0 TGCATTAGCTAGGAATATTTCCATCGTTGAAAAGTATAAGCGTTTAGTTCAACCAATCCC 120 consensus_6880#1 ---ACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGTAAACACGA 107 * * * * ** * * * * * * ** * * * consensus_6880#0 CCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGC 180 consensus_6880#1 CCCGGGAGGGTGG-CGTCTGTTTTTTTTATCGCACATCG----CTGTGTGTTTACAAAAC 162 *** *** * * * * ** * **** * * ** * * consensus_6880#0 ACACCGCAGTCTGTTGTTGTCCGGGAGGCCGCAAACGACGATGAAGCCGAACGAAGAAGC 240 consensus_6880#1 GCATTA-AACCCGTTTCACATTTTTAGGCTGCAAACGACGATGAAGCCGAACGAAGAAGC 221 ** * * *** **** ****************************** consensus_6880#0 AGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATT 300 consensus_6880#1 AGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATT 281 ************************************************************ consensus_6880#0 AAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTC 360 consensus_6880#1 AAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTC 341 ************************************************************ consensus_6880#0 ACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTC 420 consensus_6880#1 ACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTC 401 ************************************************************ consensus_6880#0 CAGGTAGCCGGTTCCACGCTGGAAGCATCGACCAAGGTGTACGGGCTGCGGGTCGACTCC 480 consensus_6880#1 CAGGTAGCCGGTTCCACGCTGGAAGCATCAACCAAGGTGTACGGGCTGCGGGTCGACTCC 461 ***************************** ****************************** consensus_6880#0 GTGCACACGGACGTCATGCGCATGTGCTCGGAGCTGACGCGTCAAACGGCGCGCGCCATG 540 consensus_6880#1 GTGCACACGGACGTCATGCGCATGTGCTCTGAGCAG------------------------ 497 ***************************** **** * consensus_6880#0 AACAACAATGCCGCCGACCAGGACGACGAGGAGGCGGGAGGCGAAGGCAATGCGGGCGAC 600 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 CAGTCGATGGCCGAGGGTGGCGAAGGGGGCGGCAACAAGGAGAACGAGCAGACCGTCACC 660 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 CAGCAGCCGAAGAAGGGAAGAAGCGCACCCGCAAGGTGGTCAGCACGATCACGAAATCGA 720 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 AAGACTCGATCAACGGTCCGCTGGACACGAACCCGTTCATGGATCCGTTCTTCGCCGAGC 780 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 TGAACTCGGTCGTCGGTGACGTGAACAGCTCGAGCCGGCTGATGCAGAACATCGTGCCGA 840 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 CGAAGCAGTCGGAGCTGCGGCTCGGCATGGACTACGCGTTCTGGGATCGGCGCCATCGCC 900 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GAGCTCGATCTGGACGGCGTGCCGGAAGCGTACGAGGGGCTGGAATGCAGCACGATGCGC 960 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 TTTTTGCCCCTCGGGCCGAACAATTCTGTGCGCACGCTACGTTCCGGCTACCTCATCACG 1020 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GACGCACCGGCCGAGGCTGACGAGGACGAGGAGGACGCCCGCACCAACCGGACCTCGCTC 1080 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GACGCGCACATGGACGATGTGGAGGCACGCGATCACAGCGCGGCGCTGCTGAACCGGTCC 1140 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GCGCTGGACGTACACTTTGACATCAACGCGGAGGTGGAACCGGTACCGTCCGGTGACGCG 1200 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 TTCATACTTGACTACGATGCGAAGGACATCGACGGCAACGACGACTTTGCGGAGGATGAC 1260 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GAGCTGGCGCTGGAACAGTGCAAGGGGCTGATGCGCAAAACGGTGGTGATCGAGGATATG 1320 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 CGGCCGCTCGATACGACCAGCTCGCATCTGGAGTACTCGTACCGGCCGCTCGACAACATT 1380 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 TCGCAGTTTTGGGCCGGTCCGGCGCACTGGAAGTTCAAGCGCTCGATGCGACCCCGCTCG 1440 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 ACGATGGCCCCGCCGCCCAGCGATACGGCCTCGCAAACGTCATCGACCACGGCGAAGGGA 1500 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 CGAGCGGTGGGACGGCGTAAGAAAACGTTCGAACCGGACACGCTGGACGATGTGCTGAGC 1560 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 GTGACGGAGACTCTGTTCCAGGAGTACAACCCCAACCGGCCGATCAGGGGCATCACGCAT 1620 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 CTGAAGAGTTTGGTGTGCAAGAAGTGGGAGTCGAAAAAGCTGAAGCTGCCCACCGATTAC 1680 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 AAGATCGATCCGAAGCGGTTCGATCTGTACAAGTACGCCCGGGGGTTGAGCATGCCGGAC 1740 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 TACGGGGCCCCGAACCACGCACCGTCGGAGGAGTACAACTGTGACGGTGGAGACGATCAG 1800 consensus_6880#1 ------------------------------------------------------------ consensus_6880#0 ATTTCCTGCAGCAATGACACGAACGATGGCGGTGATAATGACATGAGCCCCCCATG 1856 consensus_6880#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||