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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1138 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGAACTTGACAAATGTGATGTGTCTGGATTTCTTTTTTCCGTAGCCAAACTGCAAATTGCTTACACCTCGGCTCCAAGTTTACCGTTTTGATCGTACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTCGTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGATAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAATCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGGATACGTACATTATCGTACTCAACCGGTCACAAGTGTATGTAAAGTTCATCAAATAATTCACCGATCTGCGAACTGCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAGTTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGAGGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCTGGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGATGCGAAACCGATGATCCTGCTGGTTGGCCAGTATTCGACTGGTAAAACCACCTTCATCCGGTATCTATTGGAACGTGATTTTCC-GGGCATTAGGATCGGACCGGAACCAACAACTGACCGTTTCATAGCTGTCATGTACGATGACAAGGAGGGCATGATACCGGGAAATGCGCTTGTTGTCGATCCGAAGAAACAGTTCCGGCCGCTAGAAAAGTATGGCAACGCTTTCCTCAACCGTTTCCAGTGTTCCCACGTACCGTCCCCCGTACTACGAGCCATTTCAATCGTGGACACGCCCGGTATTCTGTCTGGTGAAAAGCAGCGCGTGGACCGAGGTTACGATTTCACTGGAGTGTTGGAATGGTTTGCGGAACGTGTAGATCGTATTATCCTGCTCTTTGATGCCCACAAGCTGGACATTTCGGATGAATTTAGGCGATCAATCGAAGCACTGCGAGGACATGACGATAAGATACGG]
[+] EMBL BM584050 [CCGCCCACGCGTCCGCCCACGCGTCCGAACTTGACAAATGTGATGTGTCTGGATTTCTTTTTTCCGTAGCCAAACTGCAAATTGCTTACACCTCGGCTCCAAGTTTACCGTTTTGATCGTACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTCGTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGATAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAATCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGGATACGTACATTATCGTACTCAACCGGTCACAAGTGTATGTAAAGTTCATCAAATAATTCACCGATCTGCGAACTGCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAGTTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGAGGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCTGGAGGAGCATTACAACTTCCATGACTTTCACTCGC ]
[+] EMBL BM645282 [ ccgGTTTACCGTTTTGATCGTACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTCGTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGATAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAATCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGGATACGTACATTATCGTACTCAACCGGTCACAAGTGTAT TAAAGTTCATCAAATAATTCACCGATCTGCGAACTGCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAGTTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGAGGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCTGGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGATGCGAAACCGATGATCCTGCTGGTTGGCCAGTATTCGACTGGTAAAACCACCTTCATCCGGTATCTATTGGAACGTGATTTTCCGGGGCATTAGGATCGGACCGGAACCAACAACTGACCGTTTCATAGCTGTCATGTACGATGACA ]
[+] EMBL BM593643 [ ccgACCGTTTTGATCGTACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTCGTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGATAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAATCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGGATACGTACATTATCGTACTCAACCGGTCACAAGTGTATGTAAAGTTCATCAAATAATTCACCGATCTGCGAACTGCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAGTTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGAGGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCTGGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGATGCGAAACCGATGATCCTGCTGGTTGGCCAGTATTCGACTGGTAAAACCACCTTCATCCGGTATCTATTGGAACGTGATTTTCC GGGCATTAGGATCGGACCGGAACCAACAACTGACCGTTTCATAGCT ]
[+] EMBL BM653646 [ ccgGGAATAACTGAGTTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGAGGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCTGGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGATGCGAAACCGATGATCCTGCTGGTTGGCCAGTATTCGACTGGTAAAACCACCTTCATCCGGTATCTATTGGAACGTGATTTTCC GGGCATTAGGATCGGACCGGAACCAACAACTGACCGTTTCATAGCTGTCATGTACGATGACAAGGAGGGCATGATACCGGGAAATGCGCTTGTTGTCGATCCGAAGAAACAGTTCCGGCCGCTAGAAAAGTATGGCAACGCTTTCCTCAACCGTTTCCAGTGTTCCCACGTACCGTCCCCCGTACTACGAGCCATTTCAATCGTGGACACGCCCGGTATTCTGTCTGGTGAAAAGCAGCGCGTGGACCGAGGTTACGATTTCACTGGAGTGTTGGAATGGTTTGCGGAACGTGTAGATCGTATTATCCTGCTCTTTGATGCCCACAAGCTGGACATTTCGGATGAATTTAGGCGATCAATCGAAGCACTGCGAGGACATGACGATAAGATACGG]
consensusID : consensus_6883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence
[CCGCGGACGCGTGGGCTCGGCTCCAAGTTTACCGTTTTGATCGTACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTCGTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGATAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAATCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGCATACGTACATTATCGTACTCAACCGGTCACAAGTGTATGTAAAGTTCATCAAATAATTCACCGATCTGCGAACTGCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAGTTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGAGGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCTGGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGATGCGAAACCGATGATCCTGCTGGTTGGCCAGTATTCGACTGGTAAAACCACCTTCATCCGGTATCTATTGGAACGTGATTTTCCGGGCATTAGGATCGGACCGGAACCAACAACGGACCGT]
[+] EMBL BM613717 [CCGCGGACGCGTGGGCTCGGCTCCAAGTTTACCGTTTTGATCGTACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTCGTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGATAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAATCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGCATACGTACATTATCGTACTCAACCGGTCACAAGTGTATGTAAAGTTCATCAAATAATTCACCGATCTGCGAACTGCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAGTTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGAGGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCTGGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGATGCGAAACCGATGATCCTGCTGGTTGGCCAGTATTCGACTGGTAAAACCACCTTCATCCGGTATCTATTGGAACGTGATTTTCCGGGCATTAGGATCGGACCGGAACCAACAACGGACCGT]
consensusID : consensus_6883#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[CCGCCCACGCGTCCGGCTTACACCTCGGCTCCAAGTTTACCGTTTTGATCGTACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTCGTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGATAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAATCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGCATACGTACATTATCGTACTCAACCGGTCACAAGTGTATGTAAAGTTCATCAAATAATTCACCGATCTGCGAACTGCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAGTTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGAGGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCTGGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGATGCGAAACCGATGATCCTGCTGGGTGGCCAGTATTCGACTGGTAA]
[+] EMBL BM637767 [CCGCCCACGCGTCCGGCTTACACCTCGGCTCCAAGTTTACCGTTTTGATCGTACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTCGTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGATAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAATCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGCATACGTACATTATCGTACTCAACCGGTCACAAGTGTATGTAAAGTTCATCAAATAATTCACCGATCTGCGAACTGCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAGTTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGAGGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCTGGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGATGCGAAACCGATGATCCTGCTGGGTGGCCAGTATTCGACTGGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6883#0 CCGCCCACGCGTCCGCCCACGCGTCCGAACTTGACAAATGTGATGTGTCTGGATTTCTTT 60
consensus_6883#1 ------------------------------------------------------------
consensus_6883#2 ------------------------------------------------------------
consensus_6883#0 TTTCCGTAGCCAAACTGCAAATTGCTTACACCTCGGCTCCAAGTTTACCGTTTTGATCGT 120
consensus_6883#1 --------------CCGCGGAC-GCGTGGGC-TCGGCTCCAAGTTTACCGTTTTGATCGT 44
consensus_6883#2 --------CCGCCCACGCGTCCGGCTTACACCTCGGCTCCAAGTTTACCGTTTTGATCGT 52
** ** * * ****************************
consensus_6883#0 ACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTC 180
consensus_6883#1 ACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTC 104
consensus_6883#2 ACGAATTCTTGCAGTGTTTTATAGTGCCTTCGTTAGATAAAGGCTCGATTAGTATCTTTC 112
************************************************************
consensus_6883#0 GTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGA 240
consensus_6883#1 GTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGA 164
consensus_6883#2 GTTCAATTGATTTAGCTTTCGTTAGTTCCTTTCAGAAGTTTAATACGCCTATTTCGTAGA 172
************************************************************
consensus_6883#0 TAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAA 300
consensus_6883#1 TAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAA 224
consensus_6883#2 TAAGGCATACGTCTCGCCAGCGCCTCATTACTCATTGCTATAATTATTCCCGAAGTGAAA 232
************************************************************
consensus_6883#0 TCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGGATACGTACATTATC 360
consensus_6883#1 TCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGCATACGTACATTATC 284
consensus_6883#2 TCGCATTTCTGTATGATTTTGTAAAGAAACACGTTAGGAACAGCGCATACGTACATTATC 292
********************************************* **************
consensus_6883#0 GTACTCAACCGGTCACAAGTGTATGTAAAGTTCATCAAATAATTCACCGATCTGCGAACT 420
consensus_6883#1 GTACTCAACCGGTCACAAGTGTATGTAAAGTTCATCAAATAATTCACCGATCTGCGAACT 344
consensus_6883#2 GTACTCAACCGGTCACAAGTGTATGTAAAGTTCATCAAATAATTCACCGATCTGCGAACT 352
************************************************************
consensus_6883#0 GCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAG 480
consensus_6883#1 GCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAG 404
consensus_6883#2 GCTGAATGAGTCATAGTGCATTTTTATCACGGTAGAAAGTGACTCACAGGAATAACTGAG 412
************************************************************
consensus_6883#0 TTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGA 540
consensus_6883#1 TTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGA 464
consensus_6883#2 TTTTCCGCTTACACCAAGCAACATGTTCAGTTGGTTGAAAAGAGAAACGAAAACGGAGGA 472
************************************************************
consensus_6883#0 GGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCT 600
consensus_6883#1 GGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCT 524
consensus_6883#2 GGTGGTGGAAAATGTTTTAGGAGAGCTGAAAAAAATTTATCGCAGTAAATTGTTACCGCT 532
************************************************************
consensus_6883#0 GGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGA 660
consensus_6883#1 GGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGA 584
consensus_6883#2 GGAGGAGCATTACAACTTCCATGACTTTCACTCGCCGAAGCTGGAGGATTCGGATTTCGA 592
************************************************************
consensus_6883#0 TGCGAAACCGATGATCCTGCTGGTTGGCCAGTATTCGACTGGTAAAACCACCTTCATCCG 720
consensus_6883#1 TGCGAAACCGATGATCCTGCTGGTTGGCCAGTATTCGACTGGTAAAACCACCTTCATCCG 644
consensus_6883#2 TGCGAAACCGATGATCCTGCTGGGTGGCCAGTATTCGACTGGTAA--------------- 637
*********************** *********************
consensus_6883#0 GTATCTATTGGAACGTGATTTTCCGGGCATTAGGATCGGACCGGAACCAACAACTGACCG 780
consensus_6883#1 GTATCTATTGGAACGTGATTTTCCGGGCATTAGGATCGGACCGGAACCAACAACGGACCG 704
consensus_6883#2 ------------------------------------------------------------
consensus_6883#0 TTTCATAGCTGTCATGTACGATGACAAGGAGGGCATGATACCGGGAAATGCGCTTGTTGT 840
consensus_6883#1 T----------------------------------------------------------- 705
consensus_6883#2 ------------------------------------------------------------
consensus_6883#0 CGATCCGAAGAAACAGTTCCGGCCGCTAGAAAAGTATGGCAACGCTTTCCTCAACCGTTT 900
consensus_6883#1 ------------------------------------------------------------
consensus_6883#2 ------------------------------------------------------------
consensus_6883#0 CCAGTGTTCCCACGTACCGTCCCCCGTACTACGAGCCATTTCAATCGTGGACACGCCCGG 960
consensus_6883#1 ------------------------------------------------------------
consensus_6883#2 ------------------------------------------------------------
consensus_6883#0 TATTCTGTCTGGTGAAAAGCAGCGCGTGGACCGAGGTTACGATTTCACTGGAGTGTTGGA 1020
consensus_6883#1 ------------------------------------------------------------
consensus_6883#2 ------------------------------------------------------------
consensus_6883#0 ATGGTTTGCGGAACGTGTAGATCGTATTATCCTGCTCTTTGATGCCCACAAGCTGGACAT 1080
consensus_6883#1 ------------------------------------------------------------
consensus_6883#2 ------------------------------------------------------------
consensus_6883#0 TTCGGATGAATTTAGGCGATCAATCGAAGCACTGCGAGGACATGACGATAAGATACGG 1138
consensus_6883#1 ----------------------------------------------------------
consensus_6883#2 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||