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Anopheles gambiae
cluster # 6886 cluster # 6886       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6886#0 length = 1254 sequences # 5  
consensus_6886#1 length = 380 sequences # 1  

consensusID : consensus_6886#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1254
fasta sequence
                              [GCTTTTTTTTTTGGGTTTGCGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACCAACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTGGAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTACGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGACACTTTGCCACGGGCGACGGCCAACAGCACGGCACCGCGGCCGCACTCGCACGCCTTCACGTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTTGTAGCGCAGCA-GCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACCAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTTCATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGA-TTCGACACGGTGGGCGTTTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGA-CACGAGCGTCGCGAACGAGGTAATGACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGTGCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACACCTTCTGCTGTACGT-CGCGCAAAAACCCGGCCGGACTTTCCTGCACCACGTGCTGGACGCGCAGCCGCGATTTGATGTACTCGATGAAGCGCTTCAGAAAGGACAGGAAGTGATCCGCGTTGCGTATGTTGCCCGGCACGACCTCCC]

[+] EMBL CNS09LQB             [GCTTTTTTTTTTGGGTTTGCGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACCAACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTGGAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTACGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGACACTTTGCCACGGGCGACGGCCAACAGCACGGCACCGCGGCCGCACTCGCACGCCTTCACGTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTTGTAGCGCA CAGGCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACCAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AGA284237            [                                      AGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACCAACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTGGAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTACGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGACACTTTGCCACGGGCGACGGCCAACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AGA284239            [                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCTTCACGTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTTGTAGCGCAGCA GCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACCAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAACGTGCCGGACGTGATGAC                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BX627659             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGTAGCTTGTAGCGCAGCA GCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACAAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCAACCTGATCATTGCCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTTCATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGA TTCGACACGGTGGGCGTTTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGA CACGAGCGTCGCGAACGAGGTAATGACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGTGCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACACCTTCTGCTGTACGT CGCGCAAAAACCCGGCCGGACTTTCCTGCACCACGTGCTGGACGCGCAGCCGCGATTTGATGTACTCGATGAAGCGCTTCAGAAAGGACAGGAAGTGATCCGCGTTGCGTATGTTGCCCGGCACGACCTCCC]
[-] EMBL AL932922             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTTCATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGATTTCGACACGGTGGGCGTTTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGACCACGAGCGTCGCGAACGAGGTAATTACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGTGCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACACCTTCTGCTGTACGTACGCctgggcc                                                                                                                          ]


>consensus_6886#0 GCTTTTTTTTTTGGGTTTGCGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCA TCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCG GCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCGAAGATCATAATACCGT AATCGGTCTTACCACGAATAGCACGACCAACGCACTGTGCCGCATGCCGCAGTGCATCGA AGGTAAGAAAATCGTTCTCCCGTATCTGGAACTGATCGCGCAAATAGTCCAACCGTGCCT TCAGTATGCGCGACTGGGTGTACACGTACGGAATGCCAAACATCAGCACCGCCCGACCGA GATGGTGATCGAAATCCACACCCTCCGACACTTTGCCACGGGCGACGGCCAACAGCACGG CACCGCGGCCGCACTCGCACGCCTTCACGTAGTTCATCAGCGCGTAGGACGTTTCCGCAT TGTCCTGCGTTTCGATGAACAGTAGCTTGTAGCGCAGCAGCGTATCGATGATGCCCTGAT CGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCC CGTCCGGTACGGTTTTGGCCGTCTCCACCAGCAGCTGGCCGTAATTGCGCGTCACCGCCG TATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCGACCTGATCATTACCACGCGCTACAA TCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCT CAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAGCGTGCCGGACGTGATGACCA CGCTCTGGAACCGCTGGAAGATCGGTTTCATCGCGATCGACGAATCGAGACAGCTGAAGT GCATGATCGGATTCGACACGGTGGGCGTTTTGTCGTCGAACGGCTCGATGATGATGGTAA AGCCCTTCGTGTACGTCGACACGAGCGTCGCGAACGAGGTAATGACCGACAGCGGGCCGT ACTCGCTCAGGTCCGTGATTTCCAGCGTGCGCAGCAGCGACTGCAACCGATCGGCACAGA AGCGCAGCGGTTTCCGCTCGATGCACACCTTCTGCTGTACGTCGCGCAAAAACCCGGCCG GACTTTCCTGCACCACGTGCTGGACGCGCAGCCGCGATTTGATGTACTCGATGAAGCGCT TCAGAAAGGACAGGAAGTGATCCGCGTTGCGTATGTTGCCCGGCACGACCTCCC



consensusID : consensus_6886#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence
                              [TTTTTTATAATTGAACACCGTTGCTTTATTCTTGCGTACATCAACTCGAACTGTGCTGCTCTCGACCACTCACTGTTTGCCTTGGGCCTGTTTTTCCAGCTTTTCCCGCTCCATGCTTTGCAGTTGCTCGAGCGTAAGTAGCGAAACGCCCAGCTGATCTTCGCGGGTGAACGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCCAAGATTATAATACCGTAATCGGTCTTACCACCAATAGCACGACCAACGCACTGTGCCGCATGCC]

[+] EMBL AGA285537            [TTTTTTATAATTGAACACCGTTGCTTTATTCTTGCGTACATCAACTCGAACTGTGCTGCTCTCGACCACTCACTGTTTGCCTTGGGCCTGTTTTTCCAGCTTTTCCCGCTCCATGCTTTGCAGTTGCTCGAGCGTAAGTAGCGAAACGCCCAGCTGATCTTCGCGGGTGAACGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCCAAGATTATAATACCGTAATCGGTCTTACCACCAATAGCACGACCAACGCACTGTGCCGCATGCC]


>consensus_6886#1 TTTTTTATAATTGAACACCGTTGCTTTATTCTTGCGTACATCAACTCGAACTGTGCTGCT CTCGACCACTCACTGTTTGCCTTGGGCCTGTTTTTCCAGCTTTTCCCGCTCCATGCTTTG CAGTTGCTCGAGCGTAAGTAGCGAAACGCCCAGCTGATCTTCGCGGGTGAACGGCTGTGC CATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAA ATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGA GAAGCGCTTGTCCGCCAAGATTATAATACCGTAATCGGTCTTACCACCAATAGCACGACC AACGCACTGTGCCGCATGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6886#0      ------------------------------------------------------------
consensus_6886#1      TTTTTTATAATTGAACACCGTTGCTTTATTCTTGCGTACATCAACTCGAACTGTGCTGCT 60
                                                                                  

consensus_6886#0      ------------------------------------------------------------
consensus_6886#1      CTCGACCACTCACTGTTTGCCTTGGGCCTGTTTTTCCAGCTTTTCCCGCTCCATGCTTTG 120
                                                                                  

consensus_6886#0      --------------------------------GCTTTTTTTTTTGGGTTTGCGGCTGTGC 28
consensus_6886#1      CAGTTGCTCGAGCGTAAGTAGCGAAACGCCCAGCTGATCTTCGCGGGTGAACGGCTGTGC 180
                                                      ***  * **   ****   *********

consensus_6886#0      CATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAA 88
consensus_6886#1      CATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAA 240
                      ************************************************************

consensus_6886#0      ATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGA 148
consensus_6886#1      ATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGA 300
                      ************************************************************

consensus_6886#0      GAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACC 208
consensus_6886#1      GAAGCGCTTGTCCGCCAAGATTATAATACCGTAATCGGTCTTACCACCAATAGCACGACC 360
                      *************** ***** ************************* ************

consensus_6886#0      AACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTG 268
consensus_6886#1      AACGCACTGTGCCGCATGCC---------------------------------------- 380
                      ********************                                        

consensus_6886#0      GAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTA 328
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      CGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGA 388
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      CACTTTGCCACGGGCGACGGCCAACAGCACGGCACCGCGGCCGCACTCGCACGCCTTCAC 448
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      GTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTT 508
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      GTAGCGCAGCAGCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAG 568
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      GTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCAC 628
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      CAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGA 688
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      GATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAG 748
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      CGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTC 808
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      CATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTT 868
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      CATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGATTCGACACGGTGGGCGT 928
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      TTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGACACGAGCGT 988
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      CGCGAACGAGGTAATGACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGT 1048
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      GCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACAC 1108
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      CTTCTGCTGTACGTCGCGCAAAAACCCGGCCGGACTTTCCTGCACCACGTGCTGGACGCG 1168
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      CAGCCGCGATTTGATGTACTCGATGAAGCGCTTCAGAAAGGACAGGAAGTGATCCGCGTT 1228
consensus_6886#1      ------------------------------------------------------------
                                                                                  

consensus_6886#0      GCGTATGTTGCCCGGCACGACCTCCC 1254
consensus_6886#1      --------------------------
                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)