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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1071 fasta sequence
[GGTTATCTATGTATCGGAGCGCATCAGCACGATTGGCCGGCAGCATCTCTCGATCAGTGTCATCAACGTGCTGTGGACGTTCGTGAACGGGACGCGCATACCACGCGAGGACGATCGGCTCCAGCGCCTGCTCCGGCTGCTACAGGACCG-TCGAAAGCGTTCGACATGTCGGGCGGTGTGTTGTGCCAGCTGCCCTGGCTGCGATTCATTGCGCCCGAATGGAGCGGGTACAATC-TG-TTGNGACGATTCAACCTGGAACTGAACGAGTTCTTTGCTCCGACCATAGCCGCCCATCATGCAAACTTTAGCGAGGATAAA-GCAAACGACGACCTGATCTACGGCTACATCAAGGAGATG-CGCGATCG-CCAGGACGATCCG-CAGTCCACCTTTACCGATCTG-CAGCTGACGATGATCATACTGGA-CATCTTTATTGCCGG-AGGTCAAACGACCA-GCACCACAC-TGGACCTAG-CG-CTCATGATGATGCTCGTTCGGCCGGACATTCAGGCACGCGTGCGACAGGAAATCGATACCACGCTGCGGTCCGACGAGCTGCCGCAGCAAACCGACCGCTCGCAGCTACCGTACACGGACGCTTTTCTGCTCGAGGTGCAGCGCTTCTTTCACATTGTGCCGGTGAGTGGACCGCGCCGTACGCTAGCAGACTGCAGTCTCGGTGGCTACCGCGTGCCTAAGGACACGACCGTACTGATCGGTCTGCGTACGGTGCACATGGACCGGGACTATTGGGGCGATCCGGAGGTGTTCCGGCCGGAACGGTTCTTGGAAAGTGAACGGGACACAGCTGGCAAGCCCCATCTGCACACGGATCGGTTAATGTTTTTCGGCATCGGTAAGCGGCGCTGTTTGGGTGAGGTGCTGGCCAGGGCGTGCTTGTTTACGTTTTTCGTCGGAGTAATGCAAAAGTTTGAACTACTTAAACCGGAAGGTGGTAATCGCGAGATGGAACCGTCGATTGTGTTGCGGCCAGGCATAACGCTGTCGCCCAAACCGTACGAGGTAGTGTTTCGTCCGCGATGAGATGGTCTTGGAGGGATATGCTCGAGGGTTAGT]
[+] EMBL AL695880 [GGTTATCTATGTATCGGAGCGCATCAGCACGATTGGCCGGCAGCATCTCTCGATCAGTGTCATCAACGTGCTGTGGACGTTCGTGAACGGGACGCGCATACCACGCGAGGACGATCGGCTCCAGCGCCTGCTCCGGCTGCTACAGGACCG TCGAAAGCGTTCGACATGTCGGGCGGTGTGTTGTGCCAGCTGCCCTGGCTGCGATTCATTGCGCCCGAATGGAGCGGGTACAATCTTGTTTGNGACGATTCAACCTGGAACTGAACGAGTTCTTTGCTCCGACCATAGCCGCCCATCATGCAAACTTTAGCGAGGATAAAGGCAAACGACGACCTGATCTACGGCTACATCAAGGAGATGCCGCGATCGCCCAGGACGATCCGNCAGTCCACCTTTACCGATCTGCCAGCTGACGATGATCATACTGGACCATCTTTATTGCCGGNAGGTCAAACGACCAGGCAACAAACATGGACCTAGCCGCCTCATGA ]
[+] EMBL BX602805 [ GCTGTGGACGTTCGTGACCGGGACGCGCATACCACGCGAGGACGATCGGCTCCAGCGCCTGCTCCGGCTGCTACAGGACCGCTCGAAAGCGTTCGACATGTCGGGCGGTGTGTTGTGCCAGCTGCCCTGGCTGCGGTTCATTGCGCCCGAATGGAGCGGGTACAATC TG TTGCGCCGATTCAACCTGGAGCTGAATGAGTTCTTTGCTCCAACCATTGCCGCCCATCATGCCAACTTTAGCGAGGATAAA GCGAACGACGACCTGATCTACGGCTACATCAAGGAGATG CGTGATCG CCAGGACGATCCG CAGTCCACCTTTACCGATCTG CAGCTGACGATGATCATACTGGA CATCTTTATTGCCGG AGGTCAAACGACCA GCACCACAC TGGACCTAG CG CTCATGATGATGCTGGTTCGGCCGGACATTCAGGCACGCGTGCGACAGGAAATCGATAACACGCTGCGGTCCGACGAGCTGCCGCAGCAAACCGACCGCTCGCAGCTACCGTACACGGACGCTTTTCTGCTCGAGGTGCAGCGCTTCT ]
[+] EMBL AL932654 [ tngccgaggCTGATCTACGGCTACATCAA GAGATG CGCGATCG CCAGGACGATCCG CAGTCCACCTTTACCGATCTG CAGCTGACGATGATCATACTGGA CATCTTTATTGCCGG AGGTCAAACGACCA GCACCACAC TGGACCTAG CG CTCATGATGATGCTCGTTCGGCCGGACATTCAGGCACGAGTGCGACAGGAAATCGATACCACGCTGCGGTCCGACGAGCTGCCGCAGCAAACCGACCGTTCGCAGCTACCGTACACGGACGCTTTTCTGCTCGAGGTGCAGCGCTTCTTTCACATTGTGCCGGTGAGTGGACCGCGCCGTACGCTAGCAGACTGCAGTCTCGGTGGCTAC ]
[+] EMBL BM640259 [ ccgG CGCGATCG CCAGGACGATCCG CAGTCCACCTTTACCGATCTG CAGCTGACGATGATCATACTGGA CATCTTTATTGCCGG CGGCCAAACGACCA GCACCACAC TGGACCTAG CG CTCATGATGATGCTCGTTCGGCCGGACATTCAGGCGCGCGTGCGACAGGAAATCGATACCACGCTGCGGTCCGACGAGCTGCCGCAGAAAACCGACCGCTCGCAGCTACCGTACACGGACGCTTTTCTGCTCGAGGTGCAGCGCTTCTTTCACATTGTGCCGGTGAGTGG ]
[+] EMBL BX609458 [ AC TGGACCTAG CG CTCATGATGATGCTCGTTCGGCCGGACATTCAGGCACGAGTGCGACAGGAAATCGATACCACGCTGCGGTCCGACGAGCTGCCGCAGCAAACCGACCGTTCGCAGCTACCGTACACGGACGCTTTTCTGCTCGAGGTGCAGCGCTTCTTTCACATTGTGCCGGTGAGTGGACCGCGCCGTACGCTAGCAGACTGCAGTCTCGGTGGCTACCGCGTGCCTAAGGACACGACCGTACTGATCGGTCTGCGTACGGTGCACATGGACCGGGACTATTGGGGCGATCCGGAGGTGTTCCGGCCGGAACGGTTCTTGGAAAGTGAACGGGACACAGCTGGCAAGCCCCATCTGCACACGGATCGGTTAATGTTTTTCGGCATCGGTAAGCGGCGCTGTTTGGGTGAGGTGCTGGCCAGGGCGTGCTTGTTTACGTTTTTCGTCGGAGTAATGCAAAAGTTTGAACTACTTAAACCGGAAGGTGGTAATCGCGAGATGGAACCGTCGATTGTGTTGCGGCCAGGCATAACGCTGTCGCCCAAACCGTACGAGGTAGTGTTTCGTCCGCGATGAGATGGTCTTGGAGGGATATGCTCGAGGGTTAGT]
consensusID : consensus_6890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[CAAGAATTGCCCCGAGGTTTAATCGATGTGATCCGCGAGCGCCATCAGCAACCGATCTGGCCCGGCAGCATCCTCTCGATCAGTGTCATCAACGTGCTGTGGACGTTCGTGACCGGGACGCGCATACCACGCGAGGACGATCGGCTACCAGCGCCTGCTCCGGCTGCTACAGGACCGCTCGAAAGCGTTCGACATGTCGGGCGGTGTGTTGTGCCAGCTGCCTGGCTGCGATTTCATTGCGCCCGAATGGAGCGGGTACAAATCTGTNTGCCGACGATTCAAACCTGGGAACCTGAACGAGTTCTTTGCTCCGACGCATAGGCGGCCATCATGCAAACTTTAGCGAGGATNACACGGCAAACGACGGAACCTTGATCTACGGCTTACATCAAGGNAGATGCGCGATTCGGCCCAGGACGATCCCGGAGTCCACCTTTNACCGATCTGCAGCCTGACGATGATCATACTGGCACATCTTTCATTGCCGGGNGGTCAANCGGACCCAGCAACCACACTNGGACCTAGCGCTCACTGCATGACTCGCTCGATTCGGACCGGACATCCAGAGCACCGAT]
[+] EMBL AL695724 [CAAGAATTGCCCCGAGGTTTAATCGATGTGATCCGCGAGCGCCATCAGCAACCGATCTGGCCCGGCAGCATCCTCTCGATCAGTGTCATCAACGTGCTGTGGACGTTCGTGACCGGGACGCGCATACCACGCGAGGACGATCGGCTACCAGCGCCTGCTCCGGCTGCTACAGGACCGCTCGAAAGCGTTCGACATGTCGGGCGGTGTGTTGTGCCAGCTGCCTGGCTGCGATTTCATTGCGCCCGAATGGAGCGGGTACAAATCTGTNTGCCGACGATTCAAACCTGGGAACCTGAACGAGTTCTTTGCTCCGACGCATAGGCGGCCATCATGCAAACTTTAGCGAGGATNACACGGCAAACGACGGAACCTTGATCTACGGCTTACATCAAGGNAGATGCGCGATTCGGCCCAGGACGATCCCGGAGTCCACCTTTNACCGATCTGCAGCCTGACGATGATCATACTGGCACATCTTTCATTGCCGGGNGGTCAANCGGACCCAGCAACCACACTNGGACCTAGCGCTCACTGCATGACTCGCTCGATTCGGACCGGACATCCAGAGCACCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6890#0 ---------------GGTT--ATCTATGT-ATCGG--AGCGC-ATCAGCA--CGATTGG- 36
consensus_6890#1 CAAGAATTGCCCCGAGGTTTAATCGATGTGATCCGCGAGCGCCATCAGCAACCGATCTGG 60
**** *** **** *** * ***** ******* **** *
consensus_6890#0 -CCGGCAGCATC-TCTCGATCAGTGTCATCAACGTGCTGTGGACGTTCGTGAACGGGACG 94
consensus_6890#1 CCCGGCAGCATCCTCTCGATCAGTGTCATCAACGTGCTGTGGACGTTCGTGACCGGGACG 120
*********** *************************************** *******
consensus_6890#0 CGCATACCACGCGAGGACGATCGGCT-CCAGCGCCTGCTCCGGCTGCTACAGGACCG-TC 152
consensus_6890#1 CGCATACCACGCGAGGACGATCGGCTACCAGCGCCTGCTCCGGCTGCTACAGGACCGCTC 180
************************** ****************************** **
consensus_6890#0 GAAAGCGTTCGACATGTCGGGCGGTGTGTTGTGCCAGCTGCCCTGGCTGCGATT-CATTG 211
consensus_6890#1 GAAAGCGTTCGACATGTCGGGCGGTGTGTTGTGCCAGCTGCC-TGGCTGCGATTTCATTG 239
****************************************** *********** *****
consensus_6890#0 CGCCCGAATGGAGCGGGTACAA-TCTGTTGN--GACGATTCAA-CCTGGAA--CTGAACG 265
consensus_6890#1 CGCCCGAATGGAGCGGGTACAAATCTGTNTGCCGACGATTCAAACCTGGGAACCTGAACG 299
********************** ***** ********** ***** * *******
consensus_6890#0 AGTTCTTTGCTCCGAC-CATAGCCGCCCATCATGCAAACTTTAGCGAGGATAA---AGCA 321
consensus_6890#1 AGTTCTTTGCTCCGACGCATAGGCGGCCATCATGCAAACTTTAGCGAGGATNACACGGCA 359
**************** ***** ** ************************* * ***
consensus_6890#0 AACGACGA---CCTGATCTACGGCT-ACATCAAGGA-GATGCGCGATCG---CCAGGACG 373
consensus_6890#1 AACGACGGAACCTTGATCTACGGCTTACATCAAGGNAGATGCGCGATTCGGCCCAGGACG 419
******* * ************ ********* ********** ********
consensus_6890#0 ATCC-GCAGTCCACCTTTA-CCGATCTGCAGC-TGACGATGATCATACTGG-ACATCTTT 429
consensus_6890#1 ATCCCGGAGTCCACCTTTNACCGATCTGCAGCCTGACGATGATCATACTGGCACATCTTT 479
**** * *********** ************ ****************** ********
consensus_6890#0 -ATTGCCGG-AGGTCAAACGA--CCAGCA-CCACACTGG-ACCTAGCGCTCATGATGATG 483
consensus_6890#1 CATTGCCGGGNGGTCAANCGGACCCAGCAACCACACTNGGACCTAGCGCTCACTGCATGA 539
******** ****** ** ****** ******* * ************
consensus_6890#0 CTCGTTCGGCCGGACATTCAGGCACGCGTGCGACAGGAAATCGATACCACGCTGCGGTCC 543
consensus_6890#1 CTCGCTCG-------ATTCGGAC-CGGACATC-CAGAGCACCGAT--------------- 575
**** *** **** * * ** *** * ****
consensus_6890#0 GACGAGCTGCCGCAGCAAACCGACCGCTCGCAGCTACCGTACACGGACGCTTTTCTGCTC 603
consensus_6890#1 ------------------------------------------------------------
consensus_6890#0 GAGGTGCAGCGCTTCTTTCACATTGTGCCGGTGAGTGGACCGCGCCGTACGCTAGCAGAC 663
consensus_6890#1 ------------------------------------------------------------
consensus_6890#0 TGCAGTCTCGGTGGCTACCGCGTGCCTAAGGACACGACCGTACTGATCGGTCTGCGTACG 723
consensus_6890#1 ------------------------------------------------------------
consensus_6890#0 GTGCACATGGACCGGGACTATTGGGGCGATCCGGAGGTGTTCCGGCCGGAACGGTTCTTG 783
consensus_6890#1 ------------------------------------------------------------
consensus_6890#0 GAAAGTGAACGGGACACAGCTGGCAAGCCCCATCTGCACACGGATCGGTTAATGTTTTTC 843
consensus_6890#1 ------------------------------------------------------------
consensus_6890#0 GGCATCGGTAAGCGGCGCTGTTTGGGTGAGGTGCTGGCCAGGGCGTGCTTGTTTACGTTT 903
consensus_6890#1 ------------------------------------------------------------
consensus_6890#0 TTCGTCGGAGTAATGCAAAAGTTTGAACTACTTAAACCGGAAGGTGGTAATCGCGAGATG 963
consensus_6890#1 ------------------------------------------------------------
consensus_6890#0 GAACCGTCGATTGTGTTGCGGCCAGGCATAACGCTGTCGCCCAAACCGTACGAGGTAGTG 1023
consensus_6890#1 ------------------------------------------------------------
consensus_6890#0 TTTCGTCCGCGATGAGATGGTCTTGGAGGGATATGCTCGAGGGTTAGT 1071
consensus_6890#1 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||