These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6892#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence [GTGGTTTTGACTGGGTTAAAAATTCTTCAAAAACACAGTTAAACTTAACTTCAGTTAAACACAGATCAATTCACCTCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGCGGGCTGTTTAACTTTGTGTTAGTTTTACAGCGTTTCTGTTTTTGTTTGTATGCCATAACGAGTCGTTAACTTCATTCACAAAATGTGTTGAGCATGAAACATTCATATATTGNCAACGCATCATTGAAGCTTTCGCGATTAAAGNTTAAT] [+] EMBL BX625288 [GTGGTTTTGACTGGGTTAAAAATTCTTCAAAAACACAGTTAAACTTAACTTCAGTTAAACACAGATCAATTCACCTCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGCGGGCTGTTTAACTTTGTGTTAGTTTTACAGCGTTTCTGTTTTTGTTTGTATGCCATAACGAGTCGTTAACTTCATTCACAAAATGTGTTGAGCATGAAACATTCATATATTGNCAACGCATCATTGAAGCTTTCGCGATTAAAGNTTAAT] consensusID : consensus_6892#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 691 fasta sequence [CCTACTGGAGTACAGCGCGAATTGTTAGCACGAGTAGATTAGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATCAATTCATTGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTAATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGC] [+] EMBL CNS091PK [CCTACTGGAGTACAGCGCGAATTGTTAGCACGAGTAGATTAGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATCAATTCATTGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTAATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCATCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTG ] [-] EMBL CNS091PL [ GATTAGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATCAATTCATTGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTAATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGAAATAAAGC ] [+] EMBL BX626655 [ ATTAGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATCAATTCATTGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTAATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGC] consensusID : consensus_6892#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [CCGAAAAACAGTTAAACACAGATCAATTCACCGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGATTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAATTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGA] [+] EMBL BM655304 [CCGAAAAACAGTTAAACACAGATCAATTCACCGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGATTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAATTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGA] consensusID : consensus_6892#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [AGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTAAGAACTAGCATCCGATCCGTACTTGGCATCCGCGAGAGGGTAGCAGCGATAGATATCAAATAAGGAAGAGCATACCGTACGCATGCACCGGTGGTTGGACGATGAAGCCCCTCCACCGTTTGGTGGGCAGTGTTCTTGGGGTGGAGAGATTTTCTCACAGCGATCGTTTCACGCATCCTTATGTGCGGATAGATGCGATTTTGTTGTCGCCATACTATCATCAAGCTTTGAACCGCTGAGCGTTCGACGATTATCGTCGCACGCGCTTTTCATCTTAATTGATCTGGGTCACATAGCTTCATT] [+] EMBL BX606570 [AGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTAAGAACTAGCATCCGATCCGTACTTGGCATCCGCGAGAGGGTAGCAGCGATAGATATCAAATAAGGAAGAGCATACCGTACGCATGCACCGGTGGTTGGACGATGAAGCCCCTCCACCGTTTGGTGGGCAGTGTTCTTGGGGTGGAGAGATTTTCTCACAGCGATCGTTTCACGCATCCTTATGTGCGGATAGATGCGATTTTGTTGTCGCCATACTATCATCAAGCTTTGAACCGCTGAGCGTTCGACGATTATCGTCGCACGCGCTTTTCATCTTAATTGATCTGGGTCACATAGCTTCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6892#1 CCTACTGGAGTACAGCGCGAATTGTTAGCACGAGTAGATTAGTTGGTAAGAGTGGTTTTG 60 consensus_6892#2 ------------------------------------------------------------ consensus_6892#0 ---------------------------------GTGGTTTTGACTGGGTTAAAAATTCTT 27 consensus_6892#3 ------------------------------------------------------------ consensus_6892#1 GCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATCAATTCATTGCAAGCCATGCA 120 consensus_6892#2 ----------------CCGAAAAACAGTTAAACACAGATCAATTCACCGCAAGCCATGCA 44 consensus_6892#0 CAAAAACACAGTTAAACTTAACTTCAGTTAAACACAGATCAATTCACCTCAAGCCATGCA 87 consensus_6892#3 ------------------------------------------------------------ consensus_6892#1 GTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAA 180 consensus_6892#2 GTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAA 104 consensus_6892#0 GTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAA 147 consensus_6892#3 ------------------------------------------------------------ consensus_6892#1 TGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTAATCGTGAACTTCTCTACCAA 240 consensus_6892#2 TGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAA 164 consensus_6892#0 TGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAA 207 consensus_6892#3 ------------------------------------------------------------ consensus_6892#1 GGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAA 300 consensus_6892#2 GGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAA 224 consensus_6892#0 GGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAA 267 consensus_6892#3 -----------------AGTTGGTAAGAGTGGTTTTGGCTGGGTT--AAAAATTCTTCAA 41 ** ** * ** * * * ** *** *** * *** consensus_6892#1 CGACACCCGAAAA--GATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAA 358 consensus_6892#2 CGACACCCGAAAA--GATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAA 282 consensus_6892#0 CGACACCCGAAAA--GATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAA 325 consensus_6892#3 AAACAGTTAAACACAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAA 101 *** ** * ********************************************* consensus_6892#1 GAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATC 418 consensus_6892#2 GAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGC------------GGTATGATC 330 consensus_6892#0 GAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATC 385 consensus_6892#3 GAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATC 161 *************************************** ********* consensus_6892#1 GGTGAGATTTTCACCGAGATTGAGGTGAA---CGGCTCGAAAGCC---CCCGGACTGTAC 472 consensus_6892#2 GGTGAGATTTTCACCGAGATTGAGGTGAA---CGGCTCGAAAGCC---CCCGGATTGTAC 384 consensus_6892#0 GGTGAGATTTTCACCGAGATTGAGGTGAA---CGGCTCGAAAGCC---CCCGGACTGTAC 439 consensus_6892#3 GGTGAGATTTTCACCGAGATTGAGGTAAGAACTAGCATCCGATCCGTACTTGGCATCCGC 221 ************************** * ** * ** * ** * * consensus_6892#1 AAGTATCTGAAGGCGAAAAA-ACCGGGCAACTGCGGA------GGATTTAT-CAACAGCA 524 consensus_6892#2 AAGTATCTGAAGGCGAAAAA-ACCGGGCAATTGCGGA------GGATTTAT-CAACAGCA 436 consensus_6892#0 AAGTATCTGAAGGCGAAAAA-ACCGGGCAACTGCGGA------GGATTTAT-CAACAGCA 491 consensus_6892#3 GAGAGGGTAGCAGCGATAGATATCAAATAAGGAAGAGCATACCGTACGCATGCACCGGTG 281 ** * **** * * * * ** * * * ** ** * * consensus_6892#1 ACTTTACCAT----CTTTCTTACCGACCGCCAAGGCGTACC-----GGTGGAAAGGTTAA 575 consensus_6892#2 ACTTTACCAT----CTTTCTTACCGACCGCCAAGGCGTACC-----GGTGGAAAGGTTAA 487 consensus_6892#0 ACTTTACCAT----CTTTCTTACCGACCGCCAAGGCGTACC-----GGTGGAAAGGTTAA 542 consensus_6892#3 GTTGGACGATGAAGCCCCTCCACCGTTTGGTGGGCAGTGTTCTTGGGGTGGAGAGATTTT 341 * ** ** * **** * * ** ****** ** ** consensus_6892#1 AT-GCTGGAATTCATCCTTACACGCTCGAGGAC--ATGGTCGAGAATTTGTTA-CGCTAA 631 consensus_6892#2 AT-GCTGGAATTCATCCTTACACGCTCGAGGAC--ATGGTCGAGAATTTGTTA-CGCTAA 543 consensus_6892#0 AT-GCTGGAATTCATCCTTACACGCTCGAGGAC--ATGGTCGAGAATTTGTTA-CGCTAA 598 consensus_6892#3 CTCACAGCGATCGTTTCACGCATCCTTATGTGCGGATAGATGCGATTTTGTTGTCGCCAT 401 * * * ** * * ** ** * * ** * * ** ****** *** * consensus_6892#1 ACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGC 691 consensus_6892#2 ACTGTGCTGCTAACCGTGTTACTAGA---------------------------------- 569 consensus_6892#0 ACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGC 658 consensus_6892#3 ACTATC------ATCAAGCTTTGAACCGCTGAGCGTTCGACGATTATCGTCGCACGC-GC 454 *** * * * * * * consensus_6892#1 ------------------------------------------------------------ consensus_6892#2 ------------------------------------------------------------ consensus_6892#0 GGGCTGTTTAACTTTGTGTTAGTTTTACAGCGTTTCTGTTTTTGTTTGTATGCCATAACG 718 consensus_6892#3 TTTTCATCTTAATTGATCTGGGTCACATAGCTTCATT----------------------- 491 consensus_6892#1 ------------------------------------------------------------ consensus_6892#2 ------------------------------------------------------------ consensus_6892#0 AGTCGTTAACTTCATTCACAAAATGTGTTGAGCATGAAACATTCATATATTGNCAACGCA 778 consensus_6892#3 ------------------------------------------------------------ consensus_6892#1 ------------------------------ consensus_6892#2 ------------------------------ consensus_6892#0 TCATTGAAGCTTTCGCGATTAAAGNTTAAT 808 consensus_6892#3 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||