These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 921 fasta sequence [GCCGAGGGGTTTTGTGGCGTGCGTAAACAACAAGTGTCGATTGTCAGCCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTC-AATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGC-GGCACAGCCAACGAGCACGCAAACGC-AACCAAGTGGCCGGCCTGCCGGGCA-TTGCGGGCATCCTGTTGATCGTCGTAGGATTAGTGGGAAAACTTTGCACCGCAAATGCGGCCACCACCGTCCACTACCAGCGACATGCTGCACCACCAGCCAAATCGACGGCCACGCCCGCCCAACAGTACTTTGATGCCGTTGCACCGGAAGATCGAGAAAACTTCATCAAATACCATCTGGACAGGGCACTGGANGAGCGTTTACCCCGCCACACGAGCAGCATACCGAAGGACTTTGAGTTCGTTGCCTTCCAGGACGCGGNCGAGCCGGAACATTTTTCCCTCAACCTGNTGGACCACTTTATGATCGCTTACGGTCT] [+] EMBL AL696009 [GCCGAGGGGTTTTGTGGCGTGCGTAAACAACAAGTGTCGATTGTCAGTCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCAAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGCAGGCACAG CAACGAGCACGCAAACGCAAACCAAGTGGCCGGCCTGCCGGGCATTTGCGGGCATCCTGTTGATCGTCGTAGGA ] [+] EMBL BX621758 [ cCGTAAACAACAAGTGTCGATTGTCAGCCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTC AATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGC GGCACAGCCAACGAGCACGCAAACGC AACCAAGTGGCCGGCCTGCCGGGCA TTGCGGGCATCCTGTTGATCGTCGTAGGATTAGTGGGAAAACTTTGCACCGCAAATGCGGCCACCACCGTCCACTACCAGCGACATGCTGCACCACCAGCCAAATCGACGGCCACGCCCGCCCAACAGTACTTTGATGCCGTTGCACCGGAAGATCGAGAAAACTTCATCAAATACCATCTGGACAGGGCACTGGANGAGCGTTTACCCCGCCACACGAGCAGCATACCGAAGGACTTTGAGTTCGTTGCCTTCCAGGACGCGGNCGAGCCG ] [+] EMBL BX627940 [ CGATTGTCAGCCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTC AATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGC GGCACAGCCAACGAGCACGCAAACGC AACCAAGTGGCCGGCCTGCCGGGCA TTGCGGGCATCCTGTTGATCGTCGTAGGATTAGTGGGAAAACTTTGCACCGCAAATGCGGCCACCACCGTCCACTACCAGCGACATGCTGCACCACCAGCCAAATCGACGGCCACGCCCGCCCAACAGTACTTTGATGCCGTTGCACCGGAAGATCGAGAAAACTTCATCAAATACCATCTGGACA ] [+] EMBL BX627274 [ TGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTC AATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGC GGCACAGCCAACGAGCACGCAAACGC AACCAAGTGGCCGGCCTGCCGGGCA TTGCGGGCATCCTGTTGATCGTCGTAGGATTAGTGGGAAAACTTTGCACCGCAAATGCGGCCACCACCGTCCACTACCAGCGACATGCTGCACCACCAGCCAAATCGACGGCCACGCCCGCCCAACAGTACTTTGATGCCGTTGCACCGGAAGATCGAGAAAACTTCATCAAATACCATCTGGACAGGGCACTGGAGGAGCGTTTACCCCGCCACACGAGCAGCATACCGAAGGACTTTGAGTTCGTTGCCTTCCAGGACGCGGNCGAGCCGGAACATTTTTCCCTCAACCTGNTGGACCACTTTATGATCGCTTACGGTCT] consensusID : consensus_6897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [GATCGCCGAGGTAGTGTCGATTGTCAGCCACCCAGACAGTCTCTCGATTCTCTCTCCATACTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGCGGACAGG] [+] EMBL AL931898 [GATCGCCGAGGTAGTGTCGATTGTCAGCCACCCAGACAGTCTCTCGATTCTCTCTCCATACTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGCGGACAGG] consensusID : consensus_6897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [CAGAATCGCCACGAGGNGGACGTGCCGTAAACAACAAGTGTCGATTGTCAGCCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTGTGTGTGTAATTATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACGAAAAGACGTTTACACGTATGGGTCTGCGAAGACCCAGCACNCATTATTCGCTCATTATCCTTCCGAGAANAAAGGGGTTGCGAGAAACAGGATTTC] [+] EMBL BX466226 [CAGAATCGCCACGAGGNGGACGTGCCGTAAACAACAAGTGTCGATTGTCAGCCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTGTGTGTGTAATTATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACGAAAAGACGTTTACACGTATGGGTCTGCGAAGACCCAGCACNCATTATTCGCTCATTATCCTTCCGAGAANAAAGGGGTTGCGAGAAACAGGATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6897#0 GCCGAGGGGTTTTGTGGCGTGCG-TAAAC-----AACAAGTGTCGATTGTCAGCCACCCA 54 consensus_6897#1 --------------------GAT-CGCCG-----AGGTAGTGTCGATTGTCAGCCACCCA 34 consensus_6897#2 --CAGAATCGCCACGAGGNGGACGTGCCGTAAACAACAAGTGTCGATTGTCAGCCACCCA 58 * * ********************** consensus_6897#0 GACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCC 114 consensus_6897#1 GACAGTC-TCTCGATTCTCTCTCCATAC-TCCCTCTCGTCATAGAAGTGTTCGCATTTCC 92 consensus_6897#2 GACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCC 118 ******* ******************** ******************************* consensus_6897#0 TTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTT 174 consensus_6897#1 TTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTT 152 consensus_6897#2 TTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTT 178 ************************************************************ consensus_6897#0 CCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGT 234 consensus_6897#1 CCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGT 212 consensus_6897#2 CCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGT 238 ************************************************************ consensus_6897#0 GTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTT 294 consensus_6897#1 GTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTT 272 consensus_6897#2 GTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTT 298 ************************************************************ consensus_6897#0 TGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTG 354 consensus_6897#1 -GTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTG 331 consensus_6897#2 -GTGTGTGTAATTA-TACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTG 356 ************* ********************************************* consensus_6897#0 GAGGAAGAAAGTTTTCCACCCTCCTTTCCGACAC-AAAAGACGTTTACACGTTTGGGTCT 413 consensus_6897#1 GAGGAAGAAAGTTTTCCACCCTCCTTTCCGACAC-AAAAGACGTTTACACGTTTGGGTCT 390 consensus_6897#2 GAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACGAAAAGACGTTTACACGTATGGGTCT 416 ********************************** ***************** ******* consensus_6897#0 GCGAAGACCCA-CACC-ATTATTCGCTCATTATCCTTCCGAGAAAAA-GGGGTTGCGAGA 470 consensus_6897#1 GCGAAGACCCA-CACC-ATTATTCGCTCATTATCCTTCCGAGAAAAA-GGGGTTGCGAGA 447 consensus_6897#2 GCGAAGACCCAGCACNCATTATTCGCTCATTATCCTTCCGAGAANAAAGGGGTTGCGAGA 476 *********** *** *************************** ** ************ consensus_6897#0 AACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACA 530 consensus_6897#1 AACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACA 507 consensus_6897#2 AACAGGATTTC------------------------------------------------- 487 *********** consensus_6897#0 AAGCTGAAGCAATGTTGCGGCACAGCCAACGAGCACGCAAACGCAACCAAGTGGCCGGCC 590 consensus_6897#1 AAGCTGAAGCAATGTTGCGG-ACAGG---------------------------------- 532 consensus_6897#2 ------------------------------------------------------------ consensus_6897#0 TGCCGGGCATTGCGGGCATCCTGTTGATCGTCGTAGGATTAGTGGGAAAACTTTGCACCG 650 consensus_6897#1 ------------------------------------------------------------ consensus_6897#2 ------------------------------------------------------------ consensus_6897#0 CAAATGCGGCCACCACCGTCCACTACCAGCGACATGCTGCACCACCAGCCAAATCGACGG 710 consensus_6897#1 ------------------------------------------------------------ consensus_6897#2 ------------------------------------------------------------ consensus_6897#0 CCACGCCCGCCCAACAGTACTTTGATGCCGTTGCACCGGAAGATCGAGAAAACTTCATCA 770 consensus_6897#1 ------------------------------------------------------------ consensus_6897#2 ------------------------------------------------------------ consensus_6897#0 AATACCATCTGGACAGGGCACTGGANGAGCGTTTACCCCGCCACACGAGCAGCATACCGA 830 consensus_6897#1 ------------------------------------------------------------ consensus_6897#2 ------------------------------------------------------------ consensus_6897#0 AGGACTTTGAGTTCGTTGCCTTCCAGGACGCGGNCGAGCCGGAACATTTTTCCCTCAACC 890 consensus_6897#1 ------------------------------------------------------------ consensus_6897#2 ------------------------------------------------------------ consensus_6897#0 TGNTGGACCACTTTATGATCGCTTACGGTCT 921 consensus_6897#1 ------------------------------- consensus_6897#2 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||