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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGATCGAACAGTGCTCCTAGTTCTGAATAGCTGCCCTGTTTGCAATTGTTTGCAGGTTTACCACCAACTTTAGTTCGTCCTAATTCGGTTTTATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAACCGAATAAGGCTAAGCGGGGGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAGGCAAACAACGCTAATAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTCTTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCATGAGCGCAAAGCAGCTGAACGTAGACGCATCATTGAAGAGCGATGTGGCAAACCCAAAAATGTTGAGGATGCTAATGAAGGTAACAAAGACTTGCTTTTTTTGTTTTTATTAAAGTAGTTTCAGTGACTTAGAAGGTAACAGATAAAAAGTAAATTGACACATTTTCGCGACGTAAAATCGCGCCGTTCTGAATGAATATGTTTCTACATGTTTTCTGCAAAAACATATATTTGTTAGTTTCAAGGCAATAGTAAAATAACATAAACCGATTGAAGTAATGTCAATAACCATATGTTGTAATTT]
[+] EMBL BM657603 [CCGCCCACGCGTCCGCCCACGCGTCCGATCGAACAGTGCTCCTAGTTCTGAATAGCTGCCCTGTTTGCAATTGTTTGCAGGTTTACCACCAACTTTAGTTCGTCCTAATTCGGTTTTATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAACCGAATAAGGCTAAGCGGGGGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAGGCAAACAACGCTAATAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTCTTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCATGAGCGCAAAGCAGCTG ]
[+] EMBL BM584287 [ ccggtCGCTTCGGATCGAACAGTGCTCCTAGTTCTGAATAGCTGCCCTGTTTGCAATTGTTTGCAGGTTTACCA GAACTTTAGTTCGTCCTAATTCGGTTTTATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAAGCGAAGAAGGCTAAGCAGGCGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAGGCAAAGAAGGCTAAGAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTCTTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCAGGAGCGCAAAGCAGCTGAACGTAGACGCATCATTGAAGAGCGATGTGGCAAACCCAAAAATGTTGAGGATGCTAATGAAGGTAACAAAGACTTGCTTTTTTTGTTTTTATTAAAGTAGTTTCAGTGACTTAGAAGGTAACAGATAAAAAGTAAATTGACACATTTTCGCGACGTAAAATCGCGCCGTTCTGAATGAATATGTTTCTACATGTTTTCTGCAAAAACATATATTTGTTAGTTTCAAGGCAATAGTAAAATAACATAAACCGATTGAAGTAATGTCAATAACCATATGTTGTAATTT]
consensusID : consensus_6904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACCCCAGAGACAGCCGTCTGCCATGCCTGCTCTTGCAGGACTGAACCTTCCCACATTCGACGATCACGGTTTCTAAATTCGTTCAGCACACAACACCAACCCCCAAACAGCAACAGAACAACAGCGCAGTACACCACCTTCAGCAGCACAGGGAGTCACACCATCCAACCCTGTGTGCATCTGTTAACACTTTAGTGTCGTAACCCCGCACCAGCAAAACAAGTGTCCGCTAATCCTTTCTGTGAGTCGAGGTGTGTCCGTTC]
[+] EMBL BM630054 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACCCCAGAGACAGCCGTCTGCCATGCCTGCTCTTGCAGGACTGAACCTTCCCACATTCGACGATCACGGTTTCTAAATTCGTTCAGCACACAACACCAACCCCCAAACAGCAACAGAACAACAGCGCAGTACACCACCTTCAGCAGCACAGGGAGTCACACCATCCAACCCTGTGTGCATCTGTTAACACTTTAGTGTCGTAACCCCGCACCAGCAAAACAAGTGTCCGCTAATCCTTTCTGTGAGTCGAGGTGTGTCCGTTC]
consensusID : consensus_6904#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence
[ACCAGAGCAACTGCACCCGTTCAG-TGTGTATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACAGCTAAAAAAAATGCACTCTCTCGCTCTTTCGTTCTCTCACACTGTTTACGCGACT-AACTTAAACTTACGCTCACGGCACACGCGCTTAAAGGCGCGAGCAATTTCGGTTGCCCCGTGTTTGCACACACTCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTCCATTTCGATTA-TTTCCTCCTTGTGCACCACCTGCTGCGTGACGACCTGTGCCGTTTGCTGCTGCTGCTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATGCCACGATGCCTCTTCAGCGCGAACCGATCGGCAAACGCCGCTGAGCAGATGTCACACTTGAATGGTTTTAAGCCGGAGTGCACCTTTTCGTGATTCTTGAGATGCGCAGCCTGACTGAACCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGG]
[-] EMBL BM602098 [ACCAGAGCAACTGCACCCGTTCAG TGTGTATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACAGCTAAAAAAAATGCACTCTCTCGCTCTTTCGTTCTCTCACACTGTTTACGCGACT AACTTAAACTTACGCTCACGGCACACGCGCTTAAAGGCGCGAGCAATTTCGGTTGCCCCGTGTTTGCACACACTCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTCCATTTCGATTA TTTCCTCCTTGTGCACCACCTGCTGCGTGACGACCTGTGCCGTTTGCTGCTGCTGCTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATGCCACGATGCCTCTTCAGCGCGAACCGATCGGCAAACGCCGCTGAGCAGATGTCACACTTGAATGGTTTTAAGCCGGAGTGCACCTTTTCGTGATTCTTGAGATGCGCAGCCTGACTGAACCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGG]
[+] EMBL CNS08W9X [ CTGCACCCGTTCAGTTGTGTATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACTCCTAAAAAAAATGCACTCTCTCGCTCTCTCGTTCTCTCACACTGTTTACGCGACTAAACTTAAACTTACGCTCACGGCACACGCGCTTAAAGGCGCGAGAAATTTCGGTTGCCCCGTGTTTGCACACACTCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTCCATTTCGATAATTTTCCTCCTTGTGCACCACCTGCTGCGTGACGACCTGTGCCGTTTGCTGCTGCTGCTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATGCCACGATGCCTCTTCAGCGCGAACTGATCGGCAAACG ]
consensusID : consensus_6904#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[GCAAGAATCGCCCCGAGGCGAAAGGTGCGATAAAACAGTCAACTAATTTCAGTATTGTTTGTCTCAAAGGTACGTGGTGCGTTGCAGGCAGGTTTCGCTTCACCCAGCGAAACAAAAACTGGAGTGTGTTTGCTCATGTGATCCAGTGGCAGAGGAACACAATGACGACATAGCCCGTTGTAACTGATGTAATTGATATCGATTTTTGGCTGTCCGTGTTCAGTTTCACACGGGGGATTGTTTGCATGTGACGAATGCTTATGCGAGGCGAGCCGCTGGATTACGGACACGTGTAAATCTCCTCTAGTCACGTTTGAAACGGCAAACACGGCTCGTATTCGTGACGGACCCATCGCTCACATCGAACCAATCACGGAGNAGGCCAAACATCGTCCCCGAAAGTTGCTACA]
[+] EMBL AL931129 [GCAAGAATCGCCCCGAGGCGAAAGGTGCGATAAAACAGTCAACTAATTTCAGTATTGTTTGTCTCAAAGGTACGTGGTGCGTTGCAGGCAGGTTTCGCTTCACCCAGCGAAACAAAAACTGGAGTGTGTTTGCTCATGTGATCCAGTGGCAGAGGAACACAATGACGACATAGCCCGTTGTAACTGATGTAATTGATATCGATTTTTGGCTGTCCGTGTTCAGTTTCACACGGGGGATTGTTTGCATGTGACGAATGCTTATGCGAGGCGAGCCGCTGGATTACGGACACGTGTAAATCTCCTCTAGTCACGTTTGAAACGGCAAACACGGCTCGTATTCGTGACGGACCCATCGCTCACATCGAACCAATCACGGAGNAGGCCAAACATCGTCCCCGAAAGTTGCTACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6904#1 CCGCCCACGCGTCCGCCCACGCGTCCGGTGTATGCGAACCGTTTTTACGACCAAAGAAAC 60
consensus_6904#3 ------------------------------------------------------------
consensus_6904#2 -------------------------------ACCAGAGCAACTGCACCCGTTCAGTGTGT 29
consensus_6904#0 CCGCCCACGCGTCCGCCCACGCGTCCGATCGAACAGTGCTCCTAGTTCTGAATAGC-TGC 59
consensus_6904#1 CCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTA 120
consensus_6904#3 --------------------------GCAAGAATCGCCCCGAG-GCGAAAGGTGCGATAA 33
consensus_6904#2 ATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACAGCTAAAAAAA 89
consensus_6904#0 CCTGTTTGCAATTGTTTGCAGGTTTACCACCAACTTTAGTTCGTCCTA--ATTCGGTTTT 117
* * *
consensus_6904#1 TTCCTTCGACT--CTTCGTCTTCTTCTGCCTTCACTTCT-ACGTCTTATTCTTCTTCTCG 177
consensus_6904#3 AACAGTCAACTAATTTCAGTATTGTTTGTCT-CAAAGGT-ACGTGGTGCG-------TTG 84
consensus_6904#2 ATGCACTCTCTCGCTCTTTCGTTCTCTCACACTGTTTAC-GCGACTAACTTAAACTTACG 148
consensus_6904#0 ATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAACCGAATAAGGCTAAG 177
* * * * *
consensus_6904#1 CCACCGAGCTGCAACTGCACTTCTGC--AAAGAGCAAACTTTATGATACGACTGTGTGTG 235
consensus_6904#3 CAGGCAGGTTTCG-CTTCACC-CAGC--GAA--ACAAAAACTGGAGTGTGTTTGCTCATG 138
consensus_6904#2 CTCACGGCACACGCGCTTAAAGGCGC--GAGCAATTTCGGTTGCCCCGTGTTTGCACACA 206
consensus_6904#0 CGGGGGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAG 237
* * * ** * *
consensus_6904#1 TATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCAT--TGCAAA-GTATCCG 292
consensus_6904#3 TGATCCAGTGGC-AGAGGAACACAATGACGACATAGCCCGTTGT--AACTGATGTAATTG 195
consensus_6904#2 C---TCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTC--CATTTCGATTATTT 261
consensus_6904#0 GCAAACAACGCTAATAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTC 297
* * * *
consensus_6904#1 CCACCTACCATAGCGTTCGGCTTGATCAGGCCAAC---CACCCCAGAGACAGCC-GTCTG 348
consensus_6904#3 ATATCGATTTTTG-GCTGTCCGTGTTCAGTTT------CACACGGGGGATTGTTTGCATG 248
consensus_6904#2 CCTCCTTGTGCACCACCTGCTGCGTGACGACC------TGTGCCGTTTGCTGCT--GCTG 313
consensus_6904#0 TTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCATGAGCGCAAAGCAGCTGAACGT 357
* *
consensus_6904#1 CCATGCCTGCTCTTGCAG-GACTGAACCTTCCCACATTCGACGATCACGGTTTCTAAATT 407
consensus_6904#3 TGACGAATGCTTATGCGA-GGC-GAGCCG--CTGGATT--ACGGACACG---TGTAAATC 299
consensus_6904#2 CTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATG-CCACGATGCC 372
consensus_6904#0 AGACGCATCATTGAAGAGCGATGTGGCAAACCCAAAAATGTTGAGGATGCTAATGAAGGT 417
* * * * * * * * *
consensus_6904#1 CGTTCAGCACACAACACCAACCCCCAAACAGCAACAGAACAACAGCGCAGTACACCACCT 467
consensus_6904#3 TCCTCTAGTCACG-TTTGAAACGGCAAACACGGCTCGTATTCGTGACGGACCCATCGCTC 358
consensus_6904#2 TCTTCAGCGCGAA---CCGATCGGCAAACGCCGCTGAGCAGATGTCACACTTGAATGGTT 429
consensus_6904#0 AACAAAGACTTGCTTTTTTTGTTTTTATTAAAGTAGTTTCAGTGACTTAGAAGGTAACAG 477
*
consensus_6904#1 TCAGCAGCACAGGGAGTCACACCATCCAACCCTGTGT-GCATCTGT-TAACACTTTAGTG 525
consensus_6904#3 ACATCGAACCAATCACGGAGNAGGCCAAACATCGTCC-CCGAAAGT-TGCTACA------ 410
consensus_6904#2 TTAA-GCCGGAGTGCACCTTTTCGTGATTCTTGAGAT-GCGCAGCC-TGACTGAACCCAC 486
consensus_6904#0 ATAAAAAGTAAATTGACACATTTTCGCGACGTAAAATCGCGCCGTTCTGAATGAATATGT 537
* * * * *
consensus_6904#1 TCGTAACCCCGCACCAGCAAAACAAGTGTCCGCTAATCCTTTCTGTGAGTCGAGGTGTGT 585
consensus_6904#3 ------------------------------------------------------------
consensus_6904#2 GCGTCCGCCCACGC-GTCCGCCCACGCGTCCGCGG------------------------- 520
consensus_6904#0 TTCTACATGTTTTCTGCAAAAACATATATTTGTTAGTTTCAAGGCAATAGTAAAATAACA 597
consensus_6904#1 CCGTTC------------------------------------ 591
consensus_6904#3 ------------------------------------------
consensus_6904#2 ------------------------------------------
consensus_6904#0 TAAACCGATTGAAGTAATGTCAATAACCATATGTTGTAATTT 639
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||