These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1084 fasta sequence [TTTTTTTTTTTGCCTCTCACTCACACAAACACACTCACACACACATTTGATGGGCGTGTGTATTTCAGCAGGGGGCGAAAATTGCCACCCACCCCGGGAAGCACAACTAACACACAATGCGAGGAAATAAAATAAAATAAAAAAAAAACACACACACACACGCGCGCGCCGATCACAAACCGAGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGCTCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTTTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGCTTGCCGTCTTTCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACT-CGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTT-CACTTAAGTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGATTTTTT] [+] EMBL CNS08X1M [TTTTTTTTTTTGCCTCTCACTCACACAAACACACTCACACACACATTTGAGGGGCGGGTGTATTTCAGCAGGGGGCGAAAATTGCCACCCACCCCGGGAAGCACAACTAACACACAATGCGAGGAAATAAAATAAAAT AAAAAAAAACACACACACACACGCGCGCGCCGATCACAAACCGAGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGCTCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTTTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGCTTGCCGTCTTCCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACT CGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAAAAAGACTGTGTGTGCGGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTC ] [+] EMBL CNS08T21 [ tgaaatACTCACACAAACACACTCACACACACATTTGATGGGCGTGTGTATTTCAGCAGGGGGCGAAAATTGCCACCCACCCCGGGAAGCACAACTAACACACAATGCGAGGAAATAAAATAAAATAAAAAAAAAACACACACACACACGCGCGCCCCGATCACAAACCGAGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGCTCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTTTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGTTTGCCGTCTTTCTGATGTTTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTTCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATTTATATACACT CGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTTTGTTCTGG ] [+] EMBL CNS090ID [ AACACACTCACACACACATTTGATGGGCGTGTGTATTTCAGCAGGGGGCGAAAATTGCCACCCACCCCGGGAAGCACAACTAACACACAATGCGAGGAAATAAAATAAAATAAAAAAAAAACACACACACACACGCGCGCGCCGATCACAAACCGAGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGCTCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTTTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAATTTTTTGAATGCGGGAAAACAAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGAAAAACGTCTTTCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACT CGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAA ] [-] EMBL CNS090IC [ AGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGCTCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTGTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGTTTGCCGTCTTTCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCATTTTTTAAACGTTTGCCGTAGAAATGTGTATCTATATACACT CGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTAAAAGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTT CACTTAAGTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGATT ] [-] EMBL CNS08X1L [ TTGCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTGTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGCTTGCCGTCTTCCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACTGCGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTTGCACTTAAGTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGATTTTTT] consensusID : consensus_6915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 968 fasta sequence [CTAAAAATCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTGTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCTCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGTTTGCCGTCTTTCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACTCGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTTCACTTAAGTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGATTTTTTTCACTTTTTTCACTTGCACAATTCAACACGTTGTACCGCAATTGCGCCCTAAAACACGCTAGTGCGATGCGCTTGGTGCGAGAAATACGCGTACACGAAATACGTAAAATACCGGCGCGCGCTGCGATAACACGTCCG] [-] EMBL CNS08T20 [CTAAAAATCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTGTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCTCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGTTTGCCGTCTTTCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACTCGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTTCACTTAAGTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGATTTTTTTCACTTTTTTCACTTGCACAATTCAACACGTTGTACCGCAATTGCGCCCTAAAACACGCTAGTGCGATGCGCTTGGTGCGAGAAATACGCGTACACGAAATACGTAAAATACCGGCGCGCGCTGCGATAACACGTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6915#0 TTTTTTTTTTTGCCTCTCACTCACACAAACACACTCACACACACATTTGATGGGCGTGTG 60 consensus_6915#1 ------------------------------------------------------------ consensus_6915#0 TATTTCAGCAGGGGGCGAAAATTGCCACCCACCCCGGGAAGCACAACTAACACACAATGC 120 consensus_6915#1 ------------------------------------------------------------ consensus_6915#0 GAGGAAATAAAATAAAATAAAAAAAAAACACACACACACACGCGCGCGCCGATCACAAAC 180 consensus_6915#1 ------------------------------------------------------------ consensus_6915#0 CGAGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGC 240 consensus_6915#1 ------------------------------------------------------------ consensus_6915#0 TCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACAC 300 consensus_6915#1 ---------------CTAAAAATCCGCACACACACATGCACGCACACAGCACATATACAC 45 ** ************************************** consensus_6915#0 ACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTC 360 consensus_6915#1 ACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTC 105 ************************************************************ consensus_6915#0 GTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTTTCGGAATGCTGGAAAAC 420 consensus_6915#1 GTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTGTCGGAATGCTGGAAAAC 165 ****************************************** ***************** consensus_6915#0 TAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGG 480 consensus_6915#1 TAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGG 225 ************************************************************ consensus_6915#0 AGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCC-CTCCTTGCAGGCTAGC 539 consensus_6915#1 AGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCTCTCCTTGCAGGCTAGC 285 ******************************************* **************** consensus_6915#0 CGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGCTTGCCGTCTTTC 599 consensus_6915#1 CGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGTTTGCCGTCTTTC 345 *********************************************** ************ consensus_6915#0 TGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCT 659 consensus_6915#1 TGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCT 405 ************************************************************ consensus_6915#0 CGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACTCGC 719 consensus_6915#1 CGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACTCGC 465 ************************************************************ consensus_6915#0 ACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGT 779 consensus_6915#1 ACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGT 525 ************************************************************ consensus_6915#0 TTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGT 839 consensus_6915#1 TTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGT 585 ************************************************************ consensus_6915#0 CGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTC 899 consensus_6915#1 CGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTC 645 ************************************************************ consensus_6915#0 GTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACT 959 consensus_6915#1 GTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACT 705 ************************************************************ consensus_6915#0 TTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTTCACTTAA 1019 consensus_6915#1 TTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTTCACTTAA 765 ************************************************************ consensus_6915#0 GTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGAT 1079 consensus_6915#1 GTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGAT 825 ************************************************************ consensus_6915#0 TTTTT------------------------------------------------------- 1084 consensus_6915#1 TTTTTTCACTTTTTTCACTTGCACAATTCAACACGTTGTACCGCAATTGCGCCCTAAAAC 885 ***** consensus_6915#0 ------------------------------------------------------------ consensus_6915#1 ACGCTAGTGCGATGCGCTTGGTGCGAGAAATACGCGTACACGAAATACGTAAAATACCGG 945 consensus_6915#0 ----------------------- consensus_6915#1 CGCGCGCTGCGATAACACGTCCG 968 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||