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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1430 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGGAACATGAAGGGCAATCTGTTCGTGGACATAAACGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCGTTCTACCCCAAGAAATCGTACCCGCCCGAGTACATCCGCAATCATCTGCATTTGCGCTCCCGCGTAAACTCCATGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGC-GGGGGGGCTTTGTCCAGATTCACACGCCCGTACTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTCAAAGGCATGGCGAAGGAAAATGTTCCCC-TCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACGGTATCCGGCCAGCTGCACCTGGAAGCGATGGTGCACGGCTTGGACAAGGTGTACACGTTCGGGCCAACGTTCCGGGCGGAGAACTGCAAGTCCAACATTCACCTGTCCGAGTTCTACATGCTTGAGCTAGAGGAAGCGTTCATGGGCACACTGGACGAACTAACGCATCGGGTGGAAGATATGTTGAAAAGCGTCACCAAGAGTGTAATTGATCGCAGTGCGGCAGACCTAAGCGTGGTGAGAAAATCGAACAGCCAGGACGGTGGTGGCCAGCTCGAGGACTGCTTCCGATGGATCGATAAACCATTCCCGCGGCTAACGTACGACGAAGCGATGCACATACTGCAGGCGAACGAGGCGAAACTGAAGTCTCCCGTACGGCGGGAGGAGGGCATTAATAAGGAGCAGGAACTGTTCCTCGTCGAGCACTGCCAGAGTCCGGTGTTTGTGTGTCTCTGGCCGAAGGCAATCAAGTCGTTCTATATGCGAGAAAATGCGCAAAATCCTTCCCTGGTCGACGCGCTCGATCTGCTCGTCCCGCACGTCGGCGAACTGGTGGGCGGCAGTGTGCGTGANGATAGTTACGATCGTTTGCGGCGCAAGCTGCCGAACGCGGACGTCCTGCAGTGGTACTTGGAGTTGCGCAAATTCGGAAGCGTCACGACGGCCGGCTTCNGGATGGGATTCGAGCGATACCTGGCGTGGCTACTGAACGTTCNCAACGTGAAGGATGTG]
[+] EMBL BM582579 [CCGCCCACGCGTCCGCCCACGCGTCCGCACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGCAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGGAACATGAAGGGCAATCTTTTCGTGGACATAAACGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACCGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTCCTCGTAGCCTCACCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGCTACCCATTCTACCCGAAGAAATCGTACCCGCCCGAGTACATCCGCAATCATCTGCATTTGCGCTCCCGCGTAAACTCCATGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGGGTACCTGCAGC GGGGGGGCTTTGTCCAGATTCACACGCCCGTACTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTCAAAGGCATGGCGAAGGAAAATGTTCCCC TCGA ]
[+] EMBL BX623118 [ ACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGGAACATGAAGGGCAATCTGTTCGTGGACATAAACGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCGTTCTACCCCAAGAAATCGTACCCGCCCGAGTACATCCGCAATCATCTCCATTTGCGCTCCCGCGTAAACTCCATGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGC GGGGGGGCTTTGTCCAGATTCACACGCCCGTACTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTGAAAGGCATGGCGAAAGAAAATGTTCCCCTTCGAACACGCCTACTTCGATAGAGCCACCTTNCTGACGGTATCCGGCCAGCTGC ]
[+] EMBL BM591034 [ ccgCCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGAAACATGAAGGGCAATCTGTTCGTGGACATAAATGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCGTTCTACCCCAAGAAATCGTACCCGCCCGAGTACATCCGCAATCATCTGCATTTGCGCTCCCGCGTAAACTCCATGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGCGGGGGGGGTTTTGTCCAGATTCACACGCCCGTGCTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTGAAAGGCATGGCGAAGGAAAACGTTCCCC TCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACG ]
[+] EMBL BX621754 [ TCCTGGTGAAGCCGCTGAACGAACAGCTGCTCAAAGGCATGGCGAAGGAAAATGTTCCCC TCGAAAACGCCTACTTCGATAGAGCCACCTTCCTGACGGTATCCGGCCAGCTGCACCTGGAAGCGATGGTGCACGGCTTGGACAAGGTGTACACGTTCGGGCCAACGTTCCGGGCGGAGAACTGCAAGTCCAACATTCACCTGTCCGAGTTCTACATGCTTGAGCTAGAGGAAGCGTTCATGGGCACACTGGACGAACTAACGCATCGGGTGGAAGATATGTTGAAAAGCGTCACCAAGAGTGTAATTGATCGCAGTGCGGCAGACCTAAGCGTGGTGAGAAAATCGAACAGCCAGGACGGTGGTGGCCAGCTCGAGGACTGCTTCCGATGGATCGATAAACCATTCCCGCGGCTAACGTACGACGAAGCGATGCACATACTGCAGGCGAACGAGGCGAAACTGAAGTCTCCCGTACGGCGGGAGGAGGGCATTAATAAGGAGCAGGAACTGTTCCTCGTCGAGCACTGCCAGAGTCCGGTGTTTGTGTGTCTCTGGCCGAAGGCAATCAAGTCGTTCTATATGCGAGAAAATGCGCAAAATCCTTCCCTGGTCGACGCGCTCGATCTGCTCGTCCCGCACGTCGGCGAACTGGTGGGCGGCAGTGTGCGTGANGATAGTTACGATCGTTTGCGGCGCAAGCTGCCGAACGCGGACGTCCTGCAGTGGTACTTGGAGTTGCGCAAATTCGGAAGCGTCACGACGGCCGGCTTCNGGATGGGATTCGAGCGATACCTGGCGTGGCTACTGAACGTTCNCAACGTGAAGGATGTG]
consensusID : consensus_6918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 722 fasta sequence
[GGCAGAATCGCGCACGAGGTTAAAGTTAGCACACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGAAACATGAAGGGCAATCTGTTCGTGGACATAAATGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCAGTTCTACCCCAAGAAATCGTACCCGCCCGAGTACGATCCGCAATCATCTGCATTANGCGCTCNCGACGTANNACTCCATGGGCTCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGCGGGGGGGTTTTGTCCAGATTCACACGCCCGTGCTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTGAAAGGCATGGCGAAGGAAAACGTTCCCCTCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACGGGTTCCGGGCAGCTGCAC]
[+] EMBL BX468016 [GGCAGAATCGCGCACGAGGTTAAAGTTAGCACACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGAAACATGAAGGGCAATCTGTTCGTGGACATAAATGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCAGTTCTACCCCAAGAAATCGTACCCGCCCGAGTACGATCCGCAATCATCTGCATTANGCGCTCNCGACGTANNACTCCATGGGC ]
[+] EMBL BM615736 [ ccgGTTAGCACACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGAAACATGAAGGGCAATCTGTTCGTGGACATAAATGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCC GTTCTACCCCAAGAAATCGTACCCGCCCGAGTAC ATCCGCAATCATCTGCATT TGCGCTCCCG CGTA AACTCCATGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGCGGGGGGGTTTTGTCCAGATTCACACGCCCGTGCTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTGAAAGGCATGGCGAAGGAAAACGTTCCCCTCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACGGGTTCCGGGCAGCTGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6918#0 -------CCGCCCACGCGTCCGCCCACGCGTCCGCACAGACTACACCACCGATGGCTTTG 53
consensus_6918#1 GGCAGAATCGCGCACGAG---GTTAAAGTTAGCACACAGACTACACCACCGATGGCTTTG 57
*** **** * * * * * **************************
consensus_6918#0 CTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAG 113
consensus_6918#1 CTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAG 117
************************************************************
consensus_6918#0 GATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAA 173
consensus_6918#1 GATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAA 177
************************************************************
consensus_6918#0 TCGATCCGGAACATGAAGGGCAATCTGTTCGTGGACATAAACGACGGTTCGGGTCCGCAA 233
consensus_6918#1 TCGATCCGAAACATGAAGGGCAATCTGTTCGTGGACATAAATGACGGTTCGGGTCCGCAA 237
******** ******************************** ******************
consensus_6918#0 AACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTC 293
consensus_6918#1 AACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTC 297
************************************************************
consensus_6918#0 GATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACC 353
consensus_6918#1 GATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACC 357
************************************************************
consensus_6918#0 CTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCC-GTTCTACCCCAAGAAATC 412
consensus_6918#1 CTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCAGTTCTACCCCAAGAAATC 417
***************************************** ******************
consensus_6918#0 GTACCCGCCCGAGTAC-ATCCGCAATCATCTGCATT-TGCGCTCCCG-CGTAAA-CTCCA 468
consensus_6918#1 GTACCCGCCCGAGTACGATCCGCAATCATCTGCATTANGCGCTCNCGACGTANNACTCCA 477
**************** ******************* ****** ** **** *****
consensus_6918#0 TGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGC 528
consensus_6918#1 TGGGCTCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGC 537
*** *******************************************************
consensus_6918#0 GGGGGGGCTTTGTCCAGATTCACACGCCCGTACTAACGTCAAATGACTGCGAAGGTGCCG 588
consensus_6918#1 GGGGGGGTTTTGTCCAGATTCACACGCCCGTGCTAACGTCAAATGACTGCGAAGGTGCCG 597
******* *********************** ****************************
consensus_6918#0 GCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTCAAAGGCATGGCGAAGGAAA 648
consensus_6918#1 GCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTGAAAGGCATGGCGAAGGAAA 657
**************************************** *******************
consensus_6918#0 ATGTTCCCCTCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACGGTATCCGGCCAGC 708
consensus_6918#1 ACGTTCCCCTCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACGGGTTCCGGGCAGC 717
* ********************************************** ***** ****
consensus_6918#0 TGCACCTGGAAGCGATGGTGCACGGCTTGGACAAGGTGTACACGTTCGGGCCAACGTTCC 768
consensus_6918#1 TGCAC------------------------------------------------------- 722
*****
consensus_6918#0 GGGCGGAGAACTGCAAGTCCAACATTCACCTGTCCGAGTTCTACATGCTTGAGCTAGAGG 828
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 AAGCGTTCATGGGCACACTGGACGAACTAACGCATCGGGTGGAAGATATGTTGAAAAGCG 888
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 TCACCAAGAGTGTAATTGATCGCAGTGCGGCAGACCTAAGCGTGGTGAGAAAATCGAACA 948
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 GCCAGGACGGTGGTGGCCAGCTCGAGGACTGCTTCCGATGGATCGATAAACCATTCCCGC 1008
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 GGCTAACGTACGACGAAGCGATGCACATACTGCAGGCGAACGAGGCGAAACTGAAGTCTC 1068
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 CCGTACGGCGGGAGGAGGGCATTAATAAGGAGCAGGAACTGTTCCTCGTCGAGCACTGCC 1128
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 AGAGTCCGGTGTTTGTGTGTCTCTGGCCGAAGGCAATCAAGTCGTTCTATATGCGAGAAA 1188
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 ATGCGCAAAATCCTTCCCTGGTCGACGCGCTCGATCTGCTCGTCCCGCACGTCGGCGAAC 1248
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 TGGTGGGCGGCAGTGTGCGTGANGATAGTTACGATCGTTTGCGGCGCAAGCTGCCGAACG 1308
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 CGGACGTCCTGCAGTGGTACTTGGAGTTGCGCAAATTCGGAAGCGTCACGACGGCCGGCT 1368
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 TCNGGATGGGATTCGAGCGATACCTGGCGTGGCTACTGAACGTTCNCAACGTGAAGGATG 1428
consensus_6918#1 ------------------------------------------------------------
consensus_6918#0 TG 1430
consensus_6918#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||