These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1430 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGGAACATGAAGGGCAATCTGTTCGTGGACATAAACGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCGTTCTACCCCAAGAAATCGTACCCGCCCGAGTACATCCGCAATCATCTGCATTTGCGCTCCCGCGTAAACTCCATGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGC-GGGGGGGCTTTGTCCAGATTCACACGCCCGTACTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTCAAAGGCATGGCGAAGGAAAATGTTCCCC-TCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACGGTATCCGGCCAGCTGCACCTGGAAGCGATGGTGCACGGCTTGGACAAGGTGTACACGTTCGGGCCAACGTTCCGGGCGGAGAACTGCAAGTCCAACATTCACCTGTCCGAGTTCTACATGCTTGAGCTAGAGGAAGCGTTCATGGGCACACTGGACGAACTAACGCATCGGGTGGAAGATATGTTGAAAAGCGTCACCAAGAGTGTAATTGATCGCAGTGCGGCAGACCTAAGCGTGGTGAGAAAATCGAACAGCCAGGACGGTGGTGGCCAGCTCGAGGACTGCTTCCGATGGATCGATAAACCATTCCCGCGGCTAACGTACGACGAAGCGATGCACATACTGCAGGCGAACGAGGCGAAACTGAAGTCTCCCGTACGGCGGGAGGAGGGCATTAATAAGGAGCAGGAACTGTTCCTCGTCGAGCACTGCCAGAGTCCGGTGTTTGTGTGTCTCTGGCCGAAGGCAATCAAGTCGTTCTATATGCGAGAAAATGCGCAAAATCCTTCCCTGGTCGACGCGCTCGATCTGCTCGTCCCGCACGTCGGCGAACTGGTGGGCGGCAGTGTGCGTGANGATAGTTACGATCGTTTGCGGCGCAAGCTGCCGAACGCGGACGTCCTGCAGTGGTACTTGGAGTTGCGCAAATTCGGAAGCGTCACGACGGCCGGCTTCNGGATGGGATTCGAGCGATACCTGGCGTGGCTACTGAACGTTCNCAACGTGAAGGATGTG] [+] EMBL BM582579 [CCGCCCACGCGTCCGCCCACGCGTCCGCACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGCAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGGAACATGAAGGGCAATCTTTTCGTGGACATAAACGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACCGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTCCTCGTAGCCTCACCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGCTACCCATTCTACCCGAAGAAATCGTACCCGCCCGAGTACATCCGCAATCATCTGCATTTGCGCTCCCGCGTAAACTCCATGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGGGTACCTGCAGC GGGGGGGCTTTGTCCAGATTCACACGCCCGTACTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTCAAAGGCATGGCGAAGGAAAATGTTCCCC TCGA ] [+] EMBL BX623118 [ ACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGGAACATGAAGGGCAATCTGTTCGTGGACATAAACGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCGTTCTACCCCAAGAAATCGTACCCGCCCGAGTACATCCGCAATCATCTCCATTTGCGCTCCCGCGTAAACTCCATGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGC GGGGGGGCTTTGTCCAGATTCACACGCCCGTACTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTGAAAGGCATGGCGAAAGAAAATGTTCCCCTTCGAACACGCCTACTTCGATAGAGCCACCTTNCTGACGGTATCCGGCCAGCTGC ] [+] EMBL BM591034 [ ccgCCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGAAACATGAAGGGCAATCTGTTCGTGGACATAAATGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCGTTCTACCCCAAGAAATCGTACCCGCCCGAGTACATCCGCAATCATCTGCATTTGCGCTCCCGCGTAAACTCCATGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGCGGGGGGGGTTTTGTCCAGATTCACACGCCCGTGCTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTGAAAGGCATGGCGAAGGAAAACGTTCCCC TCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACG ] [+] EMBL BX621754 [ TCCTGGTGAAGCCGCTGAACGAACAGCTGCTCAAAGGCATGGCGAAGGAAAATGTTCCCC TCGAAAACGCCTACTTCGATAGAGCCACCTTCCTGACGGTATCCGGCCAGCTGCACCTGGAAGCGATGGTGCACGGCTTGGACAAGGTGTACACGTTCGGGCCAACGTTCCGGGCGGAGAACTGCAAGTCCAACATTCACCTGTCCGAGTTCTACATGCTTGAGCTAGAGGAAGCGTTCATGGGCACACTGGACGAACTAACGCATCGGGTGGAAGATATGTTGAAAAGCGTCACCAAGAGTGTAATTGATCGCAGTGCGGCAGACCTAAGCGTGGTGAGAAAATCGAACAGCCAGGACGGTGGTGGCCAGCTCGAGGACTGCTTCCGATGGATCGATAAACCATTCCCGCGGCTAACGTACGACGAAGCGATGCACATACTGCAGGCGAACGAGGCGAAACTGAAGTCTCCCGTACGGCGGGAGGAGGGCATTAATAAGGAGCAGGAACTGTTCCTCGTCGAGCACTGCCAGAGTCCGGTGTTTGTGTGTCTCTGGCCGAAGGCAATCAAGTCGTTCTATATGCGAGAAAATGCGCAAAATCCTTCCCTGGTCGACGCGCTCGATCTGCTCGTCCCGCACGTCGGCGAACTGGTGGGCGGCAGTGTGCGTGANGATAGTTACGATCGTTTGCGGCGCAAGCTGCCGAACGCGGACGTCCTGCAGTGGTACTTGGAGTTGCGCAAATTCGGAAGCGTCACGACGGCCGGCTTCNGGATGGGATTCGAGCGATACCTGGCGTGGCTACTGAACGTTCNCAACGTGAAGGATGTG] consensusID : consensus_6918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 722 fasta sequence [GGCAGAATCGCGCACGAGGTTAAAGTTAGCACACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGAAACATGAAGGGCAATCTGTTCGTGGACATAAATGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCAGTTCTACCCCAAGAAATCGTACCCGCCCGAGTACGATCCGCAATCATCTGCATTANGCGCTCNCGACGTANNACTCCATGGGCTCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGCGGGGGGGTTTTGTCCAGATTCACACGCCCGTGCTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTGAAAGGCATGGCGAAGGAAAACGTTCCCCTCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACGGGTTCCGGGCAGCTGCAC] [+] EMBL BX468016 [GGCAGAATCGCGCACGAGGTTAAAGTTAGCACACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGAAACATGAAGGGCAATCTGTTCGTGGACATAAATGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCAGTTCTACCCCAAGAAATCGTACCCGCCCGAGTACGATCCGCAATCATCTGCATTANGCGCTCNCGACGTANNACTCCATGGGC ] [+] EMBL BM615736 [ ccgGTTAGCACACAGACTACACCACCGATGGCTTTGCTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAGGATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAATCGATCCGAAACATGAAGGGCAATCTGTTCGTGGACATAAATGACGGTTCGGGTCCGCAAAACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTCGATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACCCTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCC GTTCTACCCCAAGAAATCGTACCCGCCCGAGTAC ATCCGCAATCATCTGCATT TGCGCTCCCG CGTA AACTCCATGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGCGGGGGGGTTTTGTCCAGATTCACACGCCCGTGCTAACGTCAAATGACTGCGAAGGTGCCGGCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTGAAAGGCATGGCGAAGGAAAACGTTCCCCTCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACGGGTTCCGGGCAGCTGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6918#0 -------CCGCCCACGCGTCCGCCCACGCGTCCGCACAGACTACACCACCGATGGCTTTG 53 consensus_6918#1 GGCAGAATCGCGCACGAG---GTTAAAGTTAGCACACAGACTACACCACCGATGGCTTTG 57 *** **** * * * * * ************************** consensus_6918#0 CTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAG 113 consensus_6918#1 CTGTGTTGCCGTGCAATCCTGCGATTCTCGTCCCGCAGTTACCACTATTACCGAATAAAG 117 ************************************************************ consensus_6918#0 GATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAA 173 consensus_6918#1 GATCTTTCGCCGGACAACTGTAAACCGGGCAATAAAGTGAACGTTAAAGGATGGGTCAAA 177 ************************************************************ consensus_6918#0 TCGATCCGGAACATGAAGGGCAATCTGTTCGTGGACATAAACGACGGTTCGGGTCCGCAA 233 consensus_6918#1 TCGATCCGAAACATGAAGGGCAATCTGTTCGTGGACATAAATGACGGTTCGGGTCCGCAA 237 ******** ******************************** ****************** consensus_6918#0 AACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTC 293 consensus_6918#1 AACTTCCAGCTCGTGATCAACAAGGAGAAAGCCATCGACACTGCGTACGGCTGTTCGGTC 297 ************************************************************ consensus_6918#0 GATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACC 353 consensus_6918#1 GATGCGTGCGGAGTGCTCGTAGCCTCGCCAAAGAACCAGCTTGAGCTGCACGTGGACACC 357 ************************************************************ consensus_6918#0 CTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCC-GTTCTACCCCAAGAAATC 412 consensus_6918#1 CTGACCGAGGTGGGCAAATGTCCCCTGACCGAGGGTTACCCAGTTCTACCCCAAGAAATC 417 ***************************************** ****************** consensus_6918#0 GTACCCGCCCGAGTAC-ATCCGCAATCATCTGCATT-TGCGCTCCCG-CGTAAA-CTCCA 468 consensus_6918#1 GTACCCGCCCGAGTACGATCCGCAATCATCTGCATTANGCGCTCNCGACGTANNACTCCA 477 **************** ******************* ****** ** **** ***** consensus_6918#0 TGGCATCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGC 528 consensus_6918#1 TGGGCTCGACGTTCCGGGTGCGGCACGAGGCAACGCGCGCGTTCAACGAGTACCTGCAGC 537 *** ******************************************************* consensus_6918#0 GGGGGGGCTTTGTCCAGATTCACACGCCCGTACTAACGTCAAATGACTGCGAAGGTGCCG 588 consensus_6918#1 GGGGGGGTTTTGTCCAGATTCACACGCCCGTGCTAACGTCAAATGACTGCGAAGGTGCCG 597 ******* *********************** **************************** consensus_6918#0 GCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTCAAAGGCATGGCGAAGGAAA 648 consensus_6918#1 GCGAAGCGTTCCTGGTGAAGCCGCTGAACGAACAGCTGCTGAAAGGCATGGCGAAGGAAA 657 **************************************** ******************* consensus_6918#0 ATGTTCCCCTCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACGGTATCCGGCCAGC 708 consensus_6918#1 ACGTTCCCCTCGAACACGCCTACTTCGATAGAGCCACCTTCCTGACGGGTTCCGGGCAGC 717 * ********************************************** ***** **** consensus_6918#0 TGCACCTGGAAGCGATGGTGCACGGCTTGGACAAGGTGTACACGTTCGGGCCAACGTTCC 768 consensus_6918#1 TGCAC------------------------------------------------------- 722 ***** consensus_6918#0 GGGCGGAGAACTGCAAGTCCAACATTCACCTGTCCGAGTTCTACATGCTTGAGCTAGAGG 828 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 AAGCGTTCATGGGCACACTGGACGAACTAACGCATCGGGTGGAAGATATGTTGAAAAGCG 888 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 TCACCAAGAGTGTAATTGATCGCAGTGCGGCAGACCTAAGCGTGGTGAGAAAATCGAACA 948 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 GCCAGGACGGTGGTGGCCAGCTCGAGGACTGCTTCCGATGGATCGATAAACCATTCCCGC 1008 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 GGCTAACGTACGACGAAGCGATGCACATACTGCAGGCGAACGAGGCGAAACTGAAGTCTC 1068 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 CCGTACGGCGGGAGGAGGGCATTAATAAGGAGCAGGAACTGTTCCTCGTCGAGCACTGCC 1128 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 AGAGTCCGGTGTTTGTGTGTCTCTGGCCGAAGGCAATCAAGTCGTTCTATATGCGAGAAA 1188 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 ATGCGCAAAATCCTTCCCTGGTCGACGCGCTCGATCTGCTCGTCCCGCACGTCGGCGAAC 1248 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 TGGTGGGCGGCAGTGTGCGTGANGATAGTTACGATCGTTTGCGGCGCAAGCTGCCGAACG 1308 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 CGGACGTCCTGCAGTGGTACTTGGAGTTGCGCAAATTCGGAAGCGTCACGACGGCCGGCT 1368 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 TCNGGATGGGATTCGAGCGATACCTGGCGTGGCTACTGAACGTTCNCAACGTGAAGGATG 1428 consensus_6918#1 ------------------------------------------------------------ consensus_6918#0 TG 1430 consensus_6918#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||