These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1478 fasta sequence [CCGCGGACGCGTGGGCGATATTACGAACTCATCCATCGAGGCCATCGTATTTTAGCTGTAAGAATGTAAACGCCCTTCTTCCCATCTCCCAATGAATACGCGAATGTACCAACACACACAAACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAGAGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAA--ACACACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGCAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGCGGG-AAAGGATGGGGCTGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCGTTGTTTCTGTGTGTATCCCAACCACCCTCCAGAACAAGGTAAACACAACAAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAATGAAAGATATAAAGAAGGGAGGAAAAACAAAGAAGAGCAGTGCAACAAAAAAAGAAGTACGAAATACACCGTAACACAACACAACACACACACCTAAATACGCAGAGCTAATATTTCCAAAACACGATACCAAAACAGAAAGACTTTGCCAACAAAAACAAAAAACAAAAACTGGCGGAAAAGCGAAGATGCAAACGAAACAAGGCGAATTAGGTAAACCCCGTGGAGGTGTTGACTAATGTCTCCCTCCACACCAACCAGCGGATGCCAGCCTATTGAT] [+] EMBL BM613648 [CCGCGGACGCGTGGGCGATATTACGAACTCATCCATCGAGGCCATCGTATTTTAGCTGTAAGAATGTAAACGCCCTTCTTCCCATCTCCCAATGAATACGCGAATGTACCAACACACACAAACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAGAGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATT ] [+] EMBL BM632939 [ ccgggaAACACACACAAACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAGAGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCT ] [+] EMBL BM624662 [ ccGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAA ACACACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGCAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGCGGGAAAAGGATGGGGCTGACGGAAGCGCTCTCGTCACACACAact ] [+] EMBL BX627778 [ TTCCAATTAGCTCCAATCATTCCCCATCCCATGAAAACAAATACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAAACACACACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGCGGG AGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCGTTGTTTCTGTGTGTATCCCAACCACCCTCCAGAACAAGGTAAACACAACAAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAATGAAAGATATAAAGAAGGGAGGAAAAACAAAGAAGAGCAGTGCAACAAAAAAAGAAGTACGAAATACACCGTAACACAACACAACACACACACCTAAATACGCAGAGCTAATATTTCCAAAACACGATA ] [+] EMBL BX611010 [ GCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAAACAAAAC AAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAGTGAAAGATATAAAAAAGGAAGGAAAAACAAAGAAGAGCAGTGCAACAAAACAAGAAGTACGAAATACACCGTAACACAACAC ACACACACACCTAAATACGCAGAGCTAATATTTCCAAAACACGATACCAAAACAGAAAGACTTTGCCAACAAAAACAAAAAACAAAAACTGGCGGAAAAGCGAAGATGCAAACGAAACAAGGCGAATTAGGTAAACCCCGTGGAGGTGTTGACTAATGTCTCCCTCCACACCAACCAGCGGATGCCAGCCTATTGAT] consensusID : consensus_6919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [GTCTGGGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGAGGGAGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAAACAAAACAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAG] [+] EMBL BX612673 [GTCTGGGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGAGGGAGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAAACAAAACAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6919#0 CCGCGGACGCGTGGGCGATATTACGAACTCATCCATCGAGGCCATCGTATTTTAGCTGTA 60 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 AGAATGTAAACGCCCTTCTTCCCATCTCCCAATGAATACGCGAATGTACCAACACACACA 120 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 AACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAG 180 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 AGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCA 240 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 AGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTG 300 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 TGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGT 360 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 GCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGT 420 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 TTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTG 480 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 TACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATC 540 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 GTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTA 600 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 TGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACA 660 consensus_6919#1 ---------------------------------------GTCTGGGAGATCGCCCACAAG 21 * * * * **** consensus_6919#0 TAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAG 720 consensus_6919#1 CAAGG---CTAGCTTTTCGAATAGAAGA---------AAACCCGTAGTATGTTAAGGCGT 69 ** * ** ** * **** ** ** ** * ** ** * consensus_6919#0 TTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAAACAC 780 consensus_6919#1 TACTAA-------GTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAAC---GGCTCTAT 119 * * ** *** *** **** * * ** * ** * consensus_6919#0 ACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCA 840 consensus_6919#1 CTTTTTACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCA 179 ****************************************************** consensus_6919#0 TGCCTGACTTCCCCCGAACCCGGCAAATTCGATGTGATAAGTTCAACACAACATTTAACT 900 consensus_6919#1 TGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACT 239 *********************** ************************************ consensus_6919#0 GTATTAAGCTCTGCGCGGGAAAGGATGGGGCTGACGGAAGCGCTCTCGTCACACACACAC 960 consensus_6919#1 GTATTAAGCTCTGCGAGGGAGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACAC 299 *************** **** ******* * ***************************** consensus_6919#0 ACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTG 1020 consensus_6919#1 ACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTG 359 ************************************************************ consensus_6919#0 AGAATGTGATGCGTTGCGTTGTTTCTGTGTGTATCCCAACCACCCTCCAGAACAAGGTAA 1080 consensus_6919#1 AGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAA 419 ***************** ******* *************** ****** *********** consensus_6919#0 ACACAACAAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAG 1140 consensus_6919#1 ACAAAACAAAAAAA-CACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAG 478 *** ********** ********************************************* consensus_6919#0 TCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAATG 1200 consensus_6919#1 TCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAG-- 536 ********************************************************* consensus_6919#0 AAAGATATAAAGAAGGGAGGAAAAACAAAGAAGAGCAGTGCAACAAAAAAAGAAGTACGA 1260 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 AATACACCGTAACACAACACAACACACACACCTAAATACGCAGAGCTAATATTTCCAAAA 1320 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 CACGATACCAAAACAGAAAGACTTTGCCAACAAAAACAAAAAACAAAAACTGGCGGAAAA 1380 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 GCGAAGATGCAAACGAAACAAGGCGAATTAGGTAAACCCCGTGGAGGTGTTGACTAATGT 1440 consensus_6919#1 ------------------------------------------------------------ consensus_6919#0 CTCCCTCCACACCAACCAGCGGATGCCAGCCTATTGAT 1478 consensus_6919#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||