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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1704 fasta sequence
[GGAATGGTTTTTCTGTCCTCTGCTCGCGATTTTTTTAGATTTTTTTTCCATGTCTCCTCCCCGAGACGGTTGATCTGCCGGTTCTATCTGCCCGCTGAAGCAATGGACAGCGGGTTGTAAACGGGGCGACCGGGTGACAAGAGATGCACGCACCGTAACGCAAAACGCTCCGCCAGCCTCCCCAGTGTGTCTAGTAGAATAGATAGCGCAGGTGATACGTGTTGCGTGTGTACTGTGTTTCATTTTTGTGTGTGTGTGTGTGTGTGTTCGTTCGTGTACAGCCCATGCAGCCACCGGCAGGGCGGGCAGATTTGAAGGATTTGAATTCGAACGTCCTCTTAGTGCCCTCTTAGTGTACCCGCACACTGCACTGACCTGTCAGGCGATGACATTTCGTAGCCGCCGCCGGTTCCCTTGTTTATCGATGTATTTGGCTTGTTGGAAATGTTGGAAGAAAAGGTGC--GT--GTGTGTGTGTGTCGTTGTTGTCCTTTTTCCCATCATCTCATCGTCTCTGCATGTATGTTTAAACACGTTGGCAAAATTTTCATGACACATATATATATGTATATGTATGTGTGTGTGTGTGTGTGTTTGTTTGTGAACACAAATGTTTGTTAAACGAAACAACAACAAAAATAAAACAATTGTAACGTTTTGCGCGCGAGTTTTTGGCGATTGTTTGTTTGTTTGTGTGGTTGACACAAACCGATTCCCTTT-TCTCACTCTCTCTCTCTCTTTCTCTGGCACGAGCTGTGGGTGGGTTTTGTCCTTTTCCTTTTGAAAATGTTTTGGACGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATACACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGATAGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAACAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGCAGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATGGATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATACAGAACACAAAAAAAAGGTAGTGGATGCAACCGCACCGCTCTCCCATGGGAAGCAGCCAGTGGGTGTGGTGTGGCGTACACATTTATGATGAACAGAGCCGAAATAAAGTTTGTTTGTGGGTATGTGCAGCAGCGTGGAGCGGTGTGTTAAAGAGGGAATATTTTTCAAAACAAAAAAAAAAGGAACAACACAATGAGCAGCGGAAAATATATCAGAAACAAACGAAATAAACAGAACAGAGCAGTAGTTTTTTTTTGTTTCATGTTTGGCTCCACCGTCCTCCCAGTTTTTACCATCCAATAAATCCATTGCTGGTGGTGAGTGTTTTCATTGCAAAGTGTACACTAAGTGTACACTAAGTGTACACTACCATACGTGGAAAGGAAAAACAAACGACAAAAGGAAAACCGATTAAATTCGATAAAGCGTACGAAGCGAACACAAGGAATTTGTAAAAAAAAAAACAGTTGGGGACAGATTAGCAAAGTGCTCTCATGGCGGGCGCGGTGGTGTTGCTTGGGCCAAGAGAGCAGTTACACATGTAATACACACCTTTATCTTTAT]
[+] EMBL AGA284786 [GGAATGGTTTTTCTGTCCTCTGCTCGCGATTTTTTTAGATTTTTTTTCCATGTCTCCTCCCCGAGACGGTTGATCTGCCGGTTCTATCTGCCCGCTGAAGCAATGGACAGCGGGTTGTAAACGGGGCGACCGGGTGACAAGAGATGCACGCACCGTAACGCAAAACGCTCCGCCAGCCTCCCCAGTGTGTCTAGTAGAATAGATAGCGCAGGTGATACGTGTTGCGTGTGTACTGTGTTTCATTTTTGTGTGTGTGTGTGTGTGTGTTCGTTCGTGTACAGCCCATGCAGCCACCGGGAGGG ]
[+] EMBL BM648508 [ ccgGCCGGTTCTATCTGCCCGCTGAAGCAATGGACAGCGGGTTGTAAACGGGGTGACCGGGTGACAAGAGATGCACGCACCGTAACGCAAAACGCTCCGCCAGCCTCCCCAGTGTGTCTAGTAGAATAGATAGCGCAGGTGATACGTGTTGCGTGTGTACTGTGTTTCATTTTTGTGTGTGTGTGTGTGTGTGTTCGTTCGTGTACAGCCCATGCAGCCACCGGCAGGGCGGGCAGATTTGAAGGATTTGAATTCGAACGTCCTCTTAGTGCCCTCTTAGTGTACCCGCACACTGCACTGACCTGTCAGGCGATGACATTTCGTAGCCGCCGCCGGTTCCCTTGTTTATCGATGTATTTGGCTTGTTGGAAATGTTGGAAGAAAAGGTGC GT GTGTGTGTGTGTCGTTGTTGTCCTTTTTCCCATCATCTCATCGTCTCTGCATGTATGTTTAAACACGTTGGCAAAATTTTCATGACACATATATATATGTATATGTATGTGTGTGTGTGTGTGTGTTTGTTTGTGAACACAAATGTTTGTTAAACGAAACAACAACAAAAATAAAACAATTGTAACGTTTTGCGCGCGAGTTTTTGGCGATTGTTTGTTTGTTTGTGTGGTTGACACAAACCGATTCCCTTT TCTCACTCTCTCTCTCTCTTTCTCTGGCACGA ]
[+] EMBL BX617116 [ CGGTTCTATCTGCCCGCTGAAGCAATGGACAGCGGGTTGTAAACGGGGCGACCGGGTGACAAGAGATGCACGCACCGTAACGCAAAACGCTCCGCCAGCCTCCCCAGTGTGTCTAGTAGAATAGATAGCGCAGGTGATACGTGTTGCGTGTGTACTGTGTTTCATTTTTGTGTGTGTGTGTGTGTGTGTTCGTTCGTGTACAGCCCATGCAGCCACCGGCAGGGCGGGCAGATTTGAAGGATTTGAATTCGAACGTCCTCTTAGTGCCCTCTTAGTGTACCCGCACACTGTACTGACCTGTCAGGCGATGACATTTCGTTGCCGCCGCCGGTTCCCTTGTTTATCGATGTATTTGGCTT GAAATGTTGGAAGATAAGGTGCGAGTGCGTGTGTGTGTGTCGTTGTTGTCCTTTTTCCCATCATCTCATCGTCTCTGCATGTATGTTACTACACGTTGGCAACATTTTCATGACACATATATATATGTATATGTA TATGTGTGTGTGTGTTTGTTTGTGAACACAAATGTTTGTTAAACGAAACAACAACAAAAATAAAACAATTGTAACGTTTTGCGCGCGAGTTTTTGGCGATTGTTTGTTTGTTTGTGTGGTTGACACAAACCGATTCCC ]
[-] EMBL AGA283491 [ TGCGCGCGAGTTTTTGGCGATTGTTTGTTTGTTTGTGTGGTTGACACAAACCGATTCCCTTTCTCACTCTCTCTCTCTCTCTTTCTCTGCCACGAGCTGTGGGTGGGTTTTGTCCTTTTCCTTTTGAAAATGTTTTGGACGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATACACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGATAGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAACAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGCAGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATGGATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATACAGAACACAAAAAA ]
[+] EMBL BX617071 [ TTAATATTATATAAATAAAAAGTACTATGTATACAGAACACACAAAAAAGGTAGTGGATGCAACCGCACCGCTCTCCCATGGGAAGCAGCCAGTGGGTGTGGTGTGGCGTACACATTTATGATGAACAGAGCCGAAATAAAGTTTGTTTGTGGGTATGTGCAGCAGCGTGGAGCGGTGTGTTAAAGAGGGAATATTTTTCAAAACAAAAAAAAAAGGAACAACACAATGAGCAGCGGAAAATATATCAGAAACAAACGAAATAAACAGAACAGAGCAGTAGTTTTTTTTTGTTTCATGTTTGGCTCCACCGTCCTCCCAGTTTTTACCATCCAATAAATCCATTGCTGGTGGTGAGTGTTTTCATTGCAAAGTGTACACTAAGTGTACACTAAGTGTACACTACCATACGTGGAAAGGAAAAACAAACGACAAAAGGAAAACCGATTAAATTCGATAAAGCGTACGAAGCGAACACAAGGAATTTGTAAAAAAAAAAACAGTTGGGGACAGATTAGCAAAGTGCTCTCATGGCGGGCGCGGTGGTGTTGCTTGGGCCAAGAGAGCAGTTACACATGTAATACACACCTTTATCTTTAT]
consensusID : consensus_6928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[CCGACGATTTCTATATTTTTCTTACTTGTTTTTATCTCTTTTTTTCTCCTTTTCCCATCTACCATATTCTTCCTCTTCCTCTTCTTTTTTGTTTTGTTAGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATACACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGATAGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAACAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGCAGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATGGATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATAC]
[+] EMBL BM587357 [CCGACGATTTCTATATTTTTCTTACTTGTTTTTATCTCTTTTTTTCTCCTTTTCCCATCTACCATATTCTTCCTCTTCCTCTTCTTTTTTGTTTTGTTAGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATACACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGATAGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAACAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGCAGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATGGATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6928#0 GGAATGGTTTTTCTGTCCTCTGCTCGCGATTTTTTTAGATTTTTTTTCCATGTCTCCTCC 60
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 CCGAGACGGTTGATCTGCCGGTTCTATCTGCCCGCTGAAGCAATGGACAGCGGGTTGTAA 120
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 ACGGGGCGACCGGGTGACAAGAGATGCACGCACCGTAACGCAAAACGCTCCGCCAGCCTC 180
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 CCCAGTGTGTCTAGTAGAATAGATAGCGCAGGTGATACGTGTTGCGTGTGTACTGTGTTT 240
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 CATTTTTGTGTGTGTGTGTGTGTGTGTTCGTTCGTGTACAGCCCATGCAGCCACCGGCAG 300
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 GGCGGGCAGATTTGAAGGATTTGAATTCGAACGTCCTCTTAGTGCCCTCTTAGTGTACCC 360
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 GCACACTGCACTGACCTGTCAGGCGATGACATTTCGTAGCCGCCGCCGGTTCCCTTGTTT 420
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 ATCGATGTATTTGGCTTGTTGGAAATGTTGGAAGAAAAGGTGCGTGTGTGTGTGTGTCGT 480
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 TGTTGTCCTTTTTCCCATCATCTCATCGTCTCTGCATGTATGTTTAAACACGTTGGCAAA 540
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 ATTTTCATGACACATATATATATGTATATGTATGTGTGTGTGTGTGTGTGTTTGTTTGTG 600
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 AACACAAATGTTTGTTAAACGAAACAACAACAAAAATAAAACAATTGTAACGTTTTGCGC 660
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 GCGAGTTTTTGGCGATTGTTTGTTTGTTTGTGTGGTTGACACAAACCGATTCCCTTTTCT 720
consensus_6928#1 ----------------------------CCGACGATTTCTATATTTTTCTTACTTGTTTT 32
* ** * * ** * * ** *
consensus_6928#0 CACTCTCTCTCTCTCTTTCTCTGGCACGAGCTGTGGGTGGGTTTTGTCCTTTTCCTTTTG 780
consensus_6928#1 TA-TCTCTTTTTTTCTCCTTTTCCCATCTACCATAT-TCTTCCTCTTCCTCTTCTTTTT- 89
* ***** * * *** * * ** * * * * **** *** ****
consensus_6928#0 AAAATGTTTTGGACGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATAC 840
consensus_6928#1 ----TGTTTTGTTAGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATAC 145
******* **********************************************
consensus_6928#0 ACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGAT 900
consensus_6928#1 ACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGAT 205
************************************************************
consensus_6928#0 AGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAA 960
consensus_6928#1 AGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAA 265
************************************************************
consensus_6928#0 CAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGC 1020
consensus_6928#1 CAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGC 325
************************************************************
consensus_6928#0 AGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATG 1080
consensus_6928#1 AGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATG 385
************************************************************
consensus_6928#0 GATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATAC 1140
consensus_6928#1 GATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATAC 445
************************************************************
consensus_6928#0 AGAACACAAAAAAAAGGTAGTGGATGCAACCGCACCGCTCTCCCATGGGAAGCAGCCAGT 1200
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 GGGTGTGGTGTGGCGTACACATTTATGATGAACAGAGCCGAAATAAAGTTTGTTTGTGGG 1260
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 TATGTGCAGCAGCGTGGAGCGGTGTGTTAAAGAGGGAATATTTTTCAAAACAAAAAAAAA 1320
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 AGGAACAACACAATGAGCAGCGGAAAATATATCAGAAACAAACGAAATAAACAGAACAGA 1380
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 GCAGTAGTTTTTTTTTGTTTCATGTTTGGCTCCACCGTCCTCCCAGTTTTTACCATCCAA 1440
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 TAAATCCATTGCTGGTGGTGAGTGTTTTCATTGCAAAGTGTACACTAAGTGTACACTAAG 1500
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 TGTACACTACCATACGTGGAAAGGAAAAACAAACGACAAAAGGAAAACCGATTAAATTCG 1560
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 ATAAAGCGTACGAAGCGAACACAAGGAATTTGTAAAAAAAAAAACAGTTGGGGACAGATT 1620
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 AGCAAAGTGCTCTCATGGCGGGCGCGGTGGTGTTGCTTGGGCCAAGAGAGCAGTTACACA 1680
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 TGTAATACACACCTTTATCTTTAT 1704
consensus_6928#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||