These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1704 fasta sequence [GGAATGGTTTTTCTGTCCTCTGCTCGCGATTTTTTTAGATTTTTTTTCCATGTCTCCTCCCCGAGACGGTTGATCTGCCGGTTCTATCTGCCCGCTGAAGCAATGGACAGCGGGTTGTAAACGGGGCGACCGGGTGACAAGAGATGCACGCACCGTAACGCAAAACGCTCCGCCAGCCTCCCCAGTGTGTCTAGTAGAATAGATAGCGCAGGTGATACGTGTTGCGTGTGTACTGTGTTTCATTTTTGTGTGTGTGTGTGTGTGTGTTCGTTCGTGTACAGCCCATGCAGCCACCGGCAGGGCGGGCAGATTTGAAGGATTTGAATTCGAACGTCCTCTTAGTGCCCTCTTAGTGTACCCGCACACTGCACTGACCTGTCAGGCGATGACATTTCGTAGCCGCCGCCGGTTCCCTTGTTTATCGATGTATTTGGCTTGTTGGAAATGTTGGAAGAAAAGGTGC--GT--GTGTGTGTGTGTCGTTGTTGTCCTTTTTCCCATCATCTCATCGTCTCTGCATGTATGTTTAAACACGTTGGCAAAATTTTCATGACACATATATATATGTATATGTATGTGTGTGTGTGTGTGTGTTTGTTTGTGAACACAAATGTTTGTTAAACGAAACAACAACAAAAATAAAACAATTGTAACGTTTTGCGCGCGAGTTTTTGGCGATTGTTTGTTTGTTTGTGTGGTTGACACAAACCGATTCCCTTT-TCTCACTCTCTCTCTCTCTTTCTCTGGCACGAGCTGTGGGTGGGTTTTGTCCTTTTCCTTTTGAAAATGTTTTGGACGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATACACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGATAGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAACAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGCAGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATGGATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATACAGAACACAAAAAAAAGGTAGTGGATGCAACCGCACCGCTCTCCCATGGGAAGCAGCCAGTGGGTGTGGTGTGGCGTACACATTTATGATGAACAGAGCCGAAATAAAGTTTGTTTGTGGGTATGTGCAGCAGCGTGGAGCGGTGTGTTAAAGAGGGAATATTTTTCAAAACAAAAAAAAAAGGAACAACACAATGAGCAGCGGAAAATATATCAGAAACAAACGAAATAAACAGAACAGAGCAGTAGTTTTTTTTTGTTTCATGTTTGGCTCCACCGTCCTCCCAGTTTTTACCATCCAATAAATCCATTGCTGGTGGTGAGTGTTTTCATTGCAAAGTGTACACTAAGTGTACACTAAGTGTACACTACCATACGTGGAAAGGAAAAACAAACGACAAAAGGAAAACCGATTAAATTCGATAAAGCGTACGAAGCGAACACAAGGAATTTGTAAAAAAAAAAACAGTTGGGGACAGATTAGCAAAGTGCTCTCATGGCGGGCGCGGTGGTGTTGCTTGGGCCAAGAGAGCAGTTACACATGTAATACACACCTTTATCTTTAT] [+] EMBL AGA284786 [GGAATGGTTTTTCTGTCCTCTGCTCGCGATTTTTTTAGATTTTTTTTCCATGTCTCCTCCCCGAGACGGTTGATCTGCCGGTTCTATCTGCCCGCTGAAGCAATGGACAGCGGGTTGTAAACGGGGCGACCGGGTGACAAGAGATGCACGCACCGTAACGCAAAACGCTCCGCCAGCCTCCCCAGTGTGTCTAGTAGAATAGATAGCGCAGGTGATACGTGTTGCGTGTGTACTGTGTTTCATTTTTGTGTGTGTGTGTGTGTGTGTTCGTTCGTGTACAGCCCATGCAGCCACCGGGAGGG ] [+] EMBL BM648508 [ ccgGCCGGTTCTATCTGCCCGCTGAAGCAATGGACAGCGGGTTGTAAACGGGGTGACCGGGTGACAAGAGATGCACGCACCGTAACGCAAAACGCTCCGCCAGCCTCCCCAGTGTGTCTAGTAGAATAGATAGCGCAGGTGATACGTGTTGCGTGTGTACTGTGTTTCATTTTTGTGTGTGTGTGTGTGTGTGTTCGTTCGTGTACAGCCCATGCAGCCACCGGCAGGGCGGGCAGATTTGAAGGATTTGAATTCGAACGTCCTCTTAGTGCCCTCTTAGTGTACCCGCACACTGCACTGACCTGTCAGGCGATGACATTTCGTAGCCGCCGCCGGTTCCCTTGTTTATCGATGTATTTGGCTTGTTGGAAATGTTGGAAGAAAAGGTGC GT GTGTGTGTGTGTCGTTGTTGTCCTTTTTCCCATCATCTCATCGTCTCTGCATGTATGTTTAAACACGTTGGCAAAATTTTCATGACACATATATATATGTATATGTATGTGTGTGTGTGTGTGTGTTTGTTTGTGAACACAAATGTTTGTTAAACGAAACAACAACAAAAATAAAACAATTGTAACGTTTTGCGCGCGAGTTTTTGGCGATTGTTTGTTTGTTTGTGTGGTTGACACAAACCGATTCCCTTT TCTCACTCTCTCTCTCTCTTTCTCTGGCACGA ] [+] EMBL BX617116 [ CGGTTCTATCTGCCCGCTGAAGCAATGGACAGCGGGTTGTAAACGGGGCGACCGGGTGACAAGAGATGCACGCACCGTAACGCAAAACGCTCCGCCAGCCTCCCCAGTGTGTCTAGTAGAATAGATAGCGCAGGTGATACGTGTTGCGTGTGTACTGTGTTTCATTTTTGTGTGTGTGTGTGTGTGTGTTCGTTCGTGTACAGCCCATGCAGCCACCGGCAGGGCGGGCAGATTTGAAGGATTTGAATTCGAACGTCCTCTTAGTGCCCTCTTAGTGTACCCGCACACTGTACTGACCTGTCAGGCGATGACATTTCGTTGCCGCCGCCGGTTCCCTTGTTTATCGATGTATTTGGCTT GAAATGTTGGAAGATAAGGTGCGAGTGCGTGTGTGTGTGTCGTTGTTGTCCTTTTTCCCATCATCTCATCGTCTCTGCATGTATGTTACTACACGTTGGCAACATTTTCATGACACATATATATATGTATATGTA TATGTGTGTGTGTGTTTGTTTGTGAACACAAATGTTTGTTAAACGAAACAACAACAAAAATAAAACAATTGTAACGTTTTGCGCGCGAGTTTTTGGCGATTGTTTGTTTGTTTGTGTGGTTGACACAAACCGATTCCC ] [-] EMBL AGA283491 [ TGCGCGCGAGTTTTTGGCGATTGTTTGTTTGTTTGTGTGGTTGACACAAACCGATTCCCTTTCTCACTCTCTCTCTCTCTCTTTCTCTGCCACGAGCTGTGGGTGGGTTTTGTCCTTTTCCTTTTGAAAATGTTTTGGACGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATACACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGATAGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAACAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGCAGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATGGATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATACAGAACACAAAAAA ] [+] EMBL BX617071 [ TTAATATTATATAAATAAAAAGTACTATGTATACAGAACACACAAAAAAGGTAGTGGATGCAACCGCACCGCTCTCCCATGGGAAGCAGCCAGTGGGTGTGGTGTGGCGTACACATTTATGATGAACAGAGCCGAAATAAAGTTTGTTTGTGGGTATGTGCAGCAGCGTGGAGCGGTGTGTTAAAGAGGGAATATTTTTCAAAACAAAAAAAAAAGGAACAACACAATGAGCAGCGGAAAATATATCAGAAACAAACGAAATAAACAGAACAGAGCAGTAGTTTTTTTTTGTTTCATGTTTGGCTCCACCGTCCTCCCAGTTTTTACCATCCAATAAATCCATTGCTGGTGGTGAGTGTTTTCATTGCAAAGTGTACACTAAGTGTACACTAAGTGTACACTACCATACGTGGAAAGGAAAAACAAACGACAAAAGGAAAACCGATTAAATTCGATAAAGCGTACGAAGCGAACACAAGGAATTTGTAAAAAAAAAAACAGTTGGGGACAGATTAGCAAAGTGCTCTCATGGCGGGCGCGGTGGTGTTGCTTGGGCCAAGAGAGCAGTTACACATGTAATACACACCTTTATCTTTAT] consensusID : consensus_6928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [CCGACGATTTCTATATTTTTCTTACTTGTTTTTATCTCTTTTTTTCTCCTTTTCCCATCTACCATATTCTTCCTCTTCCTCTTCTTTTTTGTTTTGTTAGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATACACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGATAGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAACAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGCAGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATGGATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATAC] [+] EMBL BM587357 [CCGACGATTTCTATATTTTTCTTACTTGTTTTTATCTCTTTTTTTCTCCTTTTCCCATCTACCATATTCTTCCTCTTCCTCTTCTTTTTTGTTTTGTTAGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATACACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGATAGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAACAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGCAGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATGGATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6928#0 GGAATGGTTTTTCTGTCCTCTGCTCGCGATTTTTTTAGATTTTTTTTCCATGTCTCCTCC 60 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 CCGAGACGGTTGATCTGCCGGTTCTATCTGCCCGCTGAAGCAATGGACAGCGGGTTGTAA 120 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 ACGGGGCGACCGGGTGACAAGAGATGCACGCACCGTAACGCAAAACGCTCCGCCAGCCTC 180 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 CCCAGTGTGTCTAGTAGAATAGATAGCGCAGGTGATACGTGTTGCGTGTGTACTGTGTTT 240 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 CATTTTTGTGTGTGTGTGTGTGTGTGTTCGTTCGTGTACAGCCCATGCAGCCACCGGCAG 300 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 GGCGGGCAGATTTGAAGGATTTGAATTCGAACGTCCTCTTAGTGCCCTCTTAGTGTACCC 360 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 GCACACTGCACTGACCTGTCAGGCGATGACATTTCGTAGCCGCCGCCGGTTCCCTTGTTT 420 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 ATCGATGTATTTGGCTTGTTGGAAATGTTGGAAGAAAAGGTGCGTGTGTGTGTGTGTCGT 480 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 TGTTGTCCTTTTTCCCATCATCTCATCGTCTCTGCATGTATGTTTAAACACGTTGGCAAA 540 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 ATTTTCATGACACATATATATATGTATATGTATGTGTGTGTGTGTGTGTGTTTGTTTGTG 600 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 AACACAAATGTTTGTTAAACGAAACAACAACAAAAATAAAACAATTGTAACGTTTTGCGC 660 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 GCGAGTTTTTGGCGATTGTTTGTTTGTTTGTGTGGTTGACACAAACCGATTCCCTTTTCT 720 consensus_6928#1 ----------------------------CCGACGATTTCTATATTTTTCTTACTTGTTTT 32 * ** * * ** * * ** * consensus_6928#0 CACTCTCTCTCTCTCTTTCTCTGGCACGAGCTGTGGGTGGGTTTTGTCCTTTTCCTTTTG 780 consensus_6928#1 TA-TCTCTTTTTTTCTCCTTTTCCCATCTACCATAT-TCTTCCTCTTCCTCTTCTTTTT- 89 * ***** * * *** * * ** * * * * **** *** **** consensus_6928#0 AAAATGTTTTGGACGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATAC 840 consensus_6928#1 ----TGTTTTGTTAGCAGTATAGTAGACGTAAACATTGGATGTTTTGTTTCTTTGTATAC 145 ******* ********************************************** consensus_6928#0 ACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGAT 900 consensus_6928#1 ACCATGTACACCAAACGCCAAGTGGTACAAACAGATGGCTCCTAGAGATGTAGGGAAGAT 205 ************************************************************ consensus_6928#0 AGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAA 960 consensus_6928#1 AGTTAGTGGAAACGAAAGGAAGGAGGAACATTGGGCAGTACGAAACACGTAAATAGCAAA 265 ************************************************************ consensus_6928#0 CAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGC 1020 consensus_6928#1 CAAGCGAATTTTAAGCGAGTGTGAGGTGTTTTTGGTGGCGTGCTGCAGCAGAAAATATGC 325 ************************************************************ consensus_6928#0 AGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATG 1080 consensus_6928#1 AGCAAAAGCGGAAAAGCGAAAGGAAAAGCGTAAAAAAAAGGGAGTGTGCGCTAGGACATG 385 ************************************************************ consensus_6928#0 GATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATAC 1140 consensus_6928#1 GATAATTGGATCTTTTTGTTAATATTTTAATATTATATAAATAAAAAGTACTATGTATAC 445 ************************************************************ consensus_6928#0 AGAACACAAAAAAAAGGTAGTGGATGCAACCGCACCGCTCTCCCATGGGAAGCAGCCAGT 1200 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 GGGTGTGGTGTGGCGTACACATTTATGATGAACAGAGCCGAAATAAAGTTTGTTTGTGGG 1260 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 TATGTGCAGCAGCGTGGAGCGGTGTGTTAAAGAGGGAATATTTTTCAAAACAAAAAAAAA 1320 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 AGGAACAACACAATGAGCAGCGGAAAATATATCAGAAACAAACGAAATAAACAGAACAGA 1380 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 GCAGTAGTTTTTTTTTGTTTCATGTTTGGCTCCACCGTCCTCCCAGTTTTTACCATCCAA 1440 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 TAAATCCATTGCTGGTGGTGAGTGTTTTCATTGCAAAGTGTACACTAAGTGTACACTAAG 1500 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 TGTACACTACCATACGTGGAAAGGAAAAACAAACGACAAAAGGAAAACCGATTAAATTCG 1560 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 ATAAAGCGTACGAAGCGAACACAAGGAATTTGTAAAAAAAAAAACAGTTGGGGACAGATT 1620 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 AGCAAAGTGCTCTCATGGCGGGCGCGGTGGTGTTGCTTGGGCCAAGAGAGCAGTTACACA 1680 consensus_6928#1 ------------------------------------------------------------ consensus_6928#0 TGTAATACACACCTTTATCTTTAT 1704 consensus_6928#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||