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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1172 fasta sequence
[CGGCTCCCTAATCTCATCGCTCGCCATCATCAACGCGGGCACACAAACCGGGCCCAGTACTACCATAGCCAGTGCGTGCGCGTGTCACGACCGACGACCACTGGCACCAGTCAGATCCACTGCAGCTACTCTTCCATCAAATCACGCAACCCACCCGGGTCCCGCTATCAGCCACGCTATCAAACACGCGTCGTGCCTGACGCCTGATCCCGGGGACGGGCGCTCCAGAAATTACCGACTCCCACCAGGCACCCATCCGACCCGCACGTTCTCTACGATGGCGTCGAGGAATATTAGTGGCACCGTCGGCAGGACTGATCGTGCCCGCTGCATCGTCTAGTGCACGTGCAAGTGTATGTGTGTGTGTGAAGGTGTGTGATGTTAGGGCAATTTTGCCTAGGCAGCTCTCTGACTCTCTAGCGCAGCATCTCAACCGCGCTCCCCCGGTGGGGGGAACACCACCCCAAAACACAGAACAGTACCACCTCCCCCCCCCCGCCACTCCTCAACAACGCGCAATCCAACCTCGTTTTGGTCCGGAAGAGGAGCATTATCAATTAGCAACTATTAAGAAACGAAGGAAAAGCAACAGAAAACCTGACGACGCTCTCAACACGCGCTGCCCGATCGACATGGAAGAAACAGAAACTCATGCAGTGGCAGCGGGCGTCAAGCACAGCGGCAGCATGTNCAACCTGAGCGACATATCGGGCAACACGGCGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGATTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGCAGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACCACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCAAGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGAAGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGATCGTCACCAGCCCGCTCAAGCTGGAGGAGACG]
[+] EMBL BX620602 [CGGCTCCCTAATCTCATCGCTCGCCATCATCAACGCGGGCACACAAACCGGGCCCAGTACTACCATAGCCAGTGCGTGCGCGTGTCACGACCGACGACCACTGGCACCAGTCAGATCCACTGCAGCTACTCTTCCATCAAATCACGCAACCCACCCGGGTCCCGCTATCAGCCACGCTATCAAACACGCGTCGTGCCTGACGCCTGATCCCGGGGACGGGCGCTCCAGAAATTACCGACTCCCACCAGGCACCCATCCGACCCGCACGTTCTCTACGATGGCGTCGAGGAATATTAGTGGCACCGTCGGCAGGACTGATCGTGCCCGCTGCATCGTCTAGTGCACGTGCAAGTGTATGTGTGTGTGTGAAGGTGTGTGATGTTAGGGCAATTTTGCCTAGGCAGCTCTCTGACTCTCTAGCGCAGCATCTCAACCGCGCTCCCCCGGTGGGGGGAACACCACCCCAAAACACAGAACAGTACCACCTCCCCCCCCCCGCCACTCCTCAACAACGCGCAATCCAACCTCGTTTTGGTCCGGAAGAGGAGCATTATCAATTAGCAACTATTAAGAAACGAAGGAAAAGCAACAGAAAACCTGACGACGCTCTCAACACGCGCTGCCCGATCGACATGGAAGAAACAGAAACTCATGCAGTGGCAGCGGGCGTCAAGCACAGCGGCAGCATGTNCAACCTGAGCGACATATCGGGCAACACGGCGGTACCG ]
[+] EMBL AGA285114 [ CATCGCTCGCCATCATCAACGCGGGCACACAAACCGGGCCCAGTACTACCATAGCCAGTGCGTGCGCGTGTCACGACCGACGACCACTGGCACCAGTCAGATCCACTGCAGCTACTCTTCCATCAAATCACGCAACCCACCCGGGTCCCGCTATCAGCCACGCTATCAAACACGCGTCGTGCCTGACGCCTGATCCCGGGGACGGGCGCTCCAGAAATTACCGACTCCCACCAGGCACCCATCCGACCCGCACGTTCTCTACGATGGCGTCGAGGAATATTAGTGGCACCGTCGGCAGGACTGATCGTGCCCGCTGCATCGTCTAGTGCACGTGCAAGTGTATGTGTGTGTGTGAAGGTGTGTGATGTTAGGGCAATTTTGCCTAGGCAGCTCTCTGACTCTCTAGCGCAGCATCTCAACCGCGCTCCCCCGGGGGGGGGAACACCACCC ]
[+] EMBL AGA284749 [ AATTAGCAACTATTAAGAAACGAAGGAAAAGCAACAGAAAACCTGACGACGCTCTCAACACGCGCTGCCCGATCGACATGGAAGAAACAGAAACTCATGCAGTGGCAGCGGGCGTCAAGCACAGCGGCAGCATGTCCAACCTGAGCGACATATCGGGCAACACGGCGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGATTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGCAGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACCACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCA ]
[-] EMBL AGA283822 [ CGGCGGTACCGCCCGGTGCGCATGCCGGGCCCGGCCGCCCCGGCATGGACATTGCGCCCGTGATTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGCAGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACCACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCAAGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGAAGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGATCGTCACCAGCCCGCTCAAGCTGGAGGAGACG]
[-] EMBL AGA283455 [ CAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCAAGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGAAGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGATCGTCACCAGCCCGCTCAAGCTGGAGGAGACG]
consensusID : consensus_6931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[CCGGAAAGGTTCGTTTCTTGGAGCGTGATTCTCGTGAACCTCTGTGGTTTTTTTTTTCGGAAACTCATGCAGTGGCAGCGGGCGTCAAGCACAGCGGCAGCATGTCCAACCTGAGCGACATATCGGGCAACACGGCGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGATTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGCAGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACCACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCAAGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGAAGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGATCGTCACCAGCCCGCTCAAGCTGGAGGAGA]
[+] EMBL BM590578 [CCGGAAAGGTTCGTTTCTTGGAGCGTGATTCTCGTGAACCTCTGTGGTTTTTTTTTTCGGAAACTCATGCAGTGGCAGCGGGCGTCAAGCACAGCGGCAGCATGTCCAACCTGAGCGACATATCGGGCAACACGGCGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGATTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGCAGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACCACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCAAGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGAAGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGATCGTCACCAGCCCGCTCAAGCTGGAGGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6931#0 CGGCTCCCTAATCTCATCGCTCGCCATCATCAACGCGGGCACACAAACCGGGCCCAGTAC 60
consensus_6931#1 ------------------------------------------------------------
consensus_6931#0 TACCATAGCCAGTGCGTGCGCGTGTCACGACCGACGACCACTGGCACCAGTCAGATCCAC 120
consensus_6931#1 ------------------------------------------------------------
consensus_6931#0 TGCAGCTACTCTTCCATCAAATCACGCAACCCACCCGGGTCCCGCTATCAGCCACGCTAT 180
consensus_6931#1 ------------------------------------------------------------
consensus_6931#0 CAAACACGCGTCGTGCCTGACGCCTGATCCCGGGGACGGGCGCTCCAGAAATTACCGACT 240
consensus_6931#1 ------------------------------------------------------------
consensus_6931#0 CCCACCAGGCACCCATCCGACCCGCACGTTCTCTACGATGGCGTCGAGGAATATTAGTGG 300
consensus_6931#1 ------------------------------------------------------------
consensus_6931#0 CACCGTCGGCAGGACTGATCGTGCCCGCTGCATCGTCTAGTGCACGTGCAAGTGTATGTG 360
consensus_6931#1 ------------------------------------------------------------
consensus_6931#0 TGTGTGTGAAGGTGTGTGATGTTAGGGCAATTTTGCCTAGGCAGCTCTCTGACTCTCTAG 420
consensus_6931#1 ------------------------------------------------------------
consensus_6931#0 CGCAGCATCTCAACCGCGCTCCCCCGGTGGGGGGAACACCACCCCAAAACACAGAACAGT 480
consensus_6931#1 ------------------------------------------------------------
consensus_6931#0 ACCACCTCCCCCCCCCCGCCACTCCTCAACAACGCGCAATCCAACCTCGTTTTGGTCCGG 540
consensus_6931#1 ------------------------------------------------------------
consensus_6931#0 AAGAGGAGCATTATCAATTAGCAACTATTAAGAAACGAAGGAAAAGCAACAGAAAACCTG 600
consensus_6931#1 ---------------------------------------------CCGGAAAGGTTCGTT 15
* * * *
consensus_6931#0 ACGACGCTCTCAACACGCGCTGCCCGATCGACATGGAAGAAACAGAAACTCATGCAGTGG 660
consensus_6931#1 TCTTGGAGCGTGATTCTCGTGAACCTCTGTGGTTTTTTTTTTCGGAAACTCATGCAGTGG 75
* * * * * ** ** * * * ****************
consensus_6931#0 CAGCGGGCGTCAAGCACAGCGGCAGCATGTNCAACCTGAGCGACATATCGGGCAACACGG 720
consensus_6931#1 CAGCGGGCGTCAAGCACAGCGGCAGCATGTCCAACCTGAGCGACATATCGGGCAACACGG 135
****************************** *****************************
consensus_6931#0 CGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGA 780
consensus_6931#1 CGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGA 195
************************************************************
consensus_6931#0 TTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGC 840
consensus_6931#1 TTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGC 255
************************************************************
consensus_6931#0 AGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACC 900
consensus_6931#1 AGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACC 315
************************************************************
consensus_6931#0 ACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACC 960
consensus_6931#1 ACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACC 375
************************************************************
consensus_6931#0 TGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCA 1020
consensus_6931#1 TGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCA 435
************************************************************
consensus_6931#0 AGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGA 1080
consensus_6931#1 AGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGA 495
************************************************************
consensus_6931#0 AGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGA 1140
consensus_6931#1 AGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGA 555
************************************************************
consensus_6931#0 TCGTCACCAGCCCGCTCAAGCTGGAGGAGACG 1172
consensus_6931#1 TCGTCACCAGCCCGCTCAAGCTGGAGGAGA-- 585
******************************
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||