These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1327 fasta sequence [TATCGTAATGCGATTGCGATTGCGATGCAAATACAATGCTTTCCATTTGCGCGCAGTATCAAAAACCTGGCTATCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTTAGTTAGATTCTTTTTGTGTTTTTTTTTCTTTCTTCTTTTAAATATGAAAATAGCAATTGACTGTTGCATCGAAATAAATCACACTTTTAAGCAATGCGCTTCAGGAGCAAACAAAGAGAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAACAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCATAATAAACAAATACGAAACATATAACTACCATAAATACGGACGGAGATACGAAAACATACACTATCGTGCGTAATCTATTGCCATGAACTCTGTTCAATTTCGAGGAAAAGATAAACTATAATACAATTATAACACGTTTAATGCAGTGTGTGCGGCGCACGGCTCTAGCAAAGGGGCGGACTATCGTAAAATATCCATTAAACATGATTAGTGGTGGACATTTTATGA-TTAAAAAAAAAGTTTTTAGTTTTTGTGTTGCTCCCTTTCTTATCCATCATTTTTGTCGCTAGTTTTTTTTTTTATTGATGCGAAAGGA-TTTTTTTAAATAGAGCTTCTGTATAATTACTCCTGCGCGCGCGTGTGAGACTATGCACNACGAGGAGTTTAAAGTTGATATCAACACAAAATATCATCCTATTCAAAACATCATCATCGTCATCAATCATTATTGCATTGTTTGGAAGCATCAGCAGCACTACGATGAGTTAAGCAAA-ACAAAAAACAAGCTAGTTTAGATTTAAGAAACTAAATTGGAGCGAAAAAGCGAACGAAAGGCATAAAAA--AACCATAATCTTTCGCTTTTCGCTCAAGTGAAACACAGAAAGGACAGAAAGTGCAAGCAGCAGCAGCAGCAGTGGGCTGTAATAGCTGCTGGGTGGTGTTTAAGTGTATTATTGCTGTGTAATGTAGTAGTGTCCCCTACTCCTTCCGTACTTTCTTCGTCACACATTCGCGTCCACATATAATCTTTACAATTGCGTTGCTTTTCGCGGTGGTGAGCGATTTTTTTCTTCTTCGGANCACCAGCAGTAGGTACTANGCTAGAGCTAGGATTACGGCGCATGTAAGCAATGCGAAACAAATCAAAAACATATACACGTACCGCCCTCTGGTTTCTGGTCGTNCCCATCTCGTCTNGTTTTCNGTCAGTGAAATAGGGGGGAAAAACAGATGTAAATTCACGAACTCTAACATATAAAACCAT] [+] EMBL BX620611 [TATCGTAATGCGATTGCGATTGCGATGCAAATACAATGCTTTCCATTTGCGCGCAGTATCAAAAACCTGGCTATCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTTAGTTAGATTCTTTTTGTGTTTTTTTTTCTTTCTTCTTTTAAATATGAAAATAGCAATTGACTGTTGCATCGAAATAAATCACACTTTTAAGCAATGCGCTTCAGGAGCAAACAAAGAGAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAACAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCATAATAAACAAATACGAAACATATAACTACCATAAATACGGACGGAGATACGAAAACATACACTATCGTGCGTAATCTATTGCCATGAACTCTGTTCAATTTCGAGGAAAAGATAAACTATAATACAATTATAACACGTTTAATGCAGTGTGTGCGGCGCACGGCTCTAGCAAAGGGGCGGACTATCGTAAAATATCCATTAAACATGATTAGTGGTGGACATTTTATGA TTAAAAAAAAAGTTTTTAGTTTTTGTGTTGCTCCCTTTCTTATCCATCATTTTTGTCGCTAGTTTTTTTTTTTATTGATGCGAAAGGA TTTTTTTAAATAGAGCTTCTGTATAATTACTCCTGCGCGCGCGTGTGAGACTATGCACNACG ] [+] EMBL BM639532 [ ccgCGAAAACATATACTATCGTGCGTAATCTATTGCCATGAACTCTGTTCAATTTCGAGGAAAAGATAAACTATAATACAATTATAACACGTTTAATGCAGTGTGTGCAGCGCACGGCTCTAGCAAAGGGGCGGACTATCGTAAAATATCCATTAAACATGATTAGTGGTGGACATTTTATGATTTAAAGAAAAAGTTTTTAGTTTTTGTGTTGCTCCCTTTCTT TCCATCATTTTTGTCACTAG TTTTTTTTATTGATGCGAAAGGATTTTTTTTAAATAGAGCTTCTGTATAATTACTCCTGCGCGCGCGTGTGAGACTATGCACAACGAGGAGTTTAAAGTTGATATCAACACAAAATATCATCCTATTCAAAACATCATCATCGTCATCAATCATTATTGCATTGTTTGGAAGCATCAGCAGCACTACGATGAGTTAAGCAAA ACAAAAAACAAGCTAGTTTAGATTTAAGAAACTAAATTGGAGCGAAAAAGCGAACGAAAGGCATAAAAA AACCATAATCTTTCGCTTTTCGCTCAAGTGAAACACAGAAAGGACAGAAAGTGCAAGCAGCAGCAGCAGCAGTGGGCTGTAATAGCTGCTGGGTGGTGTTTAAGTGTATTATTGCTGTGTAATGTAGTAGTGTCCCCTACTCCTTCCGTACTTTCTTCGTCACACATTCGCGTC ] [+] EMBL BX624249 [ acagatacAGTTAAGCAAANGCAAAAAACAAGCTAGTTTAGATTTAAGCAACTAAATTAGAGCTTAAAAGCGAACGAAAGGCGTAAAAAATAACAATTATCTTTCGCTTTTCGCTCAAGTGAAACACAGAAAGGGCAGAAAGTGCAAGCAGCAGCAGCAGCAGTGGGCTGTAATAGCTGCTGGGTGGTGTTTAAGTGTATTATTGCTGTGTAATGTAGTAGTGTCCCCTACTCCTTCCGTACTTTCTTCGTCACACATTCGCGTCCACATATAATCTTTACAATTGCGTTGCTTTTCGCGGTGGTGAGCGATTTTTTTCTTCTTCGGANCACCAGCAGTAGGTACTANGCTAGAGCTAGGATTACGGCGCATGTAAGCAATGCGAAACAAATCAAAAACATATACACGTACCGCCCTCTGGTTTCTGGTCGTNCCCATCTCGTCTNGTTTTCNGTCAGTGAAATAGGGGGGAAAAACAGATGTAAATTCACGAACTCTAACATATAAAACCAT] consensusID : consensus_6934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence [CCGGCGCTTTGCAAGAAAAGGGACATCATTTGGACCACAAAGCCTAGGCGAAACGGGACAGTAAGAATAGAGGATATAATATATGCTACAGTTGCTTGCTCTACTACGCTAAACAATCGTGCAAAGGCCGCACTGGTATGCGGACAGAGAGATAGCAGCAGGA--AAGGGAAAAGCATTCGTATATCATCAGCCTTATGTGTTTCTCCGCTTTGGGTGGATGGTCGTTTAGGAAATTTATGCTACTTTCTTTTTAAAAAGCAAATATCATAATGCGATTGCGATGCAAATACAATGCTTTCCATTTGCCGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTTGAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAATCACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCCAAAAGCATAATAAACAAATACGAAACATATAACTACCATAACTACGG] [+] EMBL BM634500 [CCGGCGCTTTGCAAGAAAAGGGACATCATTTGGACCACAAAGCCTAGGCGAAACGGGACAGTAAGAATAGAGGATATAATATATGCTACAGTTGCTTGCTCTACTACGCTAAACAATCGTGCAAAGGCCGCACTGGTATGCGGACAGAGAGATAGCAGCAGGA AAGGGAAAAGCATTCGTATATCATCAGCCTTATGTGTTTCTCCGCTTTGGGTGGATGGTCGTTTAGGAAATTTATGCTACTTTCTTTTTAAAAAGCAAATATCATAATGCGATTGCGATGCAAATACAATGCTTTCCATTTGCCGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTTGAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAATCACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCCAAAAGCATAATAAACAAATACGAAACATATAACTACCATAACTACGG] [+] EMBL BM581032 [ CCGCAAAGCCTAGGCAAAACGGGGCAGTAAGAACAGAGGATATAATATATGCTACAGTTGCTTGCTCTACTACGCTAAACAATCGTTCAAAGGCCGCACTGGTATGCGGACAGAGAGACAGCAGCAGGAGGAAGGGAAAAGCATTCGTATATCATCAGCCT ] consensusID : consensus_6934#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [CCGCATAATGCGATTGCGATGCAAATACAATGCTTTCCATTTGCCGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTTGAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAATCACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCATAATAAACAAATACGAAACATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC] [+] EMBL BM608865 [CCGCATAATGCGATTGCGATGCAAATACAATGCTTTCCATTTGCCGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTTGAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAATCACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCATAATAAACAAATACGAAACATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6934#1 CCGGCGCTTTGCAAGAAAAGGGACATCATTTGGACCACAAAGCCTAGGCGAAACGGGACA 60 consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 ------------------------------------------------------------ consensus_6934#1 GTAAGAATAGAGGATATAATATATGCTACAGTTGCTTGCTCTACTACGCTAAACAATCGT 120 consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 ------------------------------------------------------------ consensus_6934#1 GCAAAGGCCGCACTGGTATGCGGACAGAGAGATAGCAGCAGGAAAGGGAAAAGCATTCGT 180 consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 ------------------------------------------------------------ consensus_6934#1 ATATCATCAGCCTTATGTGTTTCTCCGCTTTGGGTGGATGGTCGTTTAGGAAATTTATGC 240 consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 ------------------------------------------------------------ consensus_6934#1 TACTTTCTTTTTAAAAAGCAAATATCATAATGCGATTGCGATGCAAATACAATGCTTTCC 300 consensus_6934#2 ----------------------CCGCATAATGCGATTGCGATGCAAATACAATGCTTTCC 38 consensus_6934#0 --------------TATCGTAATGCGAT--TGCGATTGCGATGCAAATACAATGCTTTCC 44 ** ****************************** consensus_6934#1 ATTTGC-CGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTAC 359 consensus_6934#2 ATTTGC-CGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTAC 97 consensus_6934#0 ATTTGCGCGCAGTATCAAAAACCTGGCTATCGAACAATGATGTTTGCTTTAAATAGGTAC 104 ****** *** ********** ******* ****************************** consensus_6934#1 GAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTT 419 consensus_6934#2 GAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTT 157 consensus_6934#0 GAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGT--TAGTTAGATTCTTTTTGTGTT 162 ************************************* *************** * ** consensus_6934#1 GAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAAT 479 consensus_6934#2 GAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAAT 217 consensus_6934#0 TT-TTTTTCTTTCTTCTTTTAAATATGAAAATAGCAATTGACTGTTGCATCGAAATAAAT 221 ***** *********** *************************** *********** consensus_6934#1 CACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAAC 539 consensus_6934#2 CACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAAC 277 consensus_6934#0 CACACTTTTAAGCAATGCGCTTCAGGAGCAAACAAAGAGAAAGGAAAACACGAATGAAAC 281 ******** ***************************** ********************* consensus_6934#1 TCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCCAAAAGCA 599 consensus_6934#2 TCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCA 337 consensus_6934#0 TCTCGAATCAAAGTGAAACAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCA 341 ****************** ********************************* ******* consensus_6934#1 TAATAAACAAATACGAAACATATAACTACCATAACTACGG-------------------- 639 consensus_6934#2 TAATAAACAAATACGAAACATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC 397 consensus_6934#0 TAATAAACAAATACGAAACATATAACTACCATAAATACGGACGGAGATACGAAAACATAC 401 ************************* * * ** * consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 CC---------------------------------------------------------- 399 consensus_6934#0 ACTATCGTGCGTAATCTATTGCCATGAACTCTGTTCAATTTCGAGGAAAAGATAAACTAT 461 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 AATACAATTATAACACGTTTAATGCAGTGTGTGCGGCGCACGGCTCTAGCAAAGGGGCGG 521 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 ACTATCGTAAAATATCCATTAAACATGATTAGTGGTGGACATTTTATGATTAAAAAAAAA 581 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 GTTTTTAGTTTTTGTGTTGCTCCCTTTCTTATCCATCATTTTTGTCGCTAGTTTTTTTTT 641 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 TTATTGATGCGAAAGGATTTTTTTAAATAGAGCTTCTGTATAATTACTCCTGCGCGCGCG 701 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 TGTGAGACTATGCACNACGAGGAGTTTAAAGTTGATATCAACACAAAATATCATCCTATT 761 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 CAAAACATCATCATCGTCATCAATCATTATTGCATTGTTTGGAAGCATCAGCAGCACTAC 821 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 GATGAGTTAAGCAAAACAAAAAACAAGCTAGTTTAGATTTAAGAAACTAAATTGGAGCGA 881 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 AAAAGCGAACGAAAGGCATAAAAAAACCATAATCTTTCGCTTTTCGCTCAAGTGAAACAC 941 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 AGAAAGGACAGAAAGTGCAAGCAGCAGCAGCAGCAGTGGGCTGTAATAGCTGCTGGGTGG 1001 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 TGTTTAAGTGTATTATTGCTGTGTAATGTAGTAGTGTCCCCTACTCCTTCCGTACTTTCT 1061 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 TCGTCACACATTCGCGTCCACATATAATCTTTACAATTGCGTTGCTTTTCGCGGTGGTGA 1121 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 GCGATTTTTTTCTTCTTCGGANCACCAGCAGTAGGTACTANGCTAGAGCTAGGATTACGG 1181 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 CGCATGTAAGCAATGCGAAACAAATCAAAAACATATACACGTACCGCCCTCTGGTTTCTG 1241 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 GTCGTNCCCATCTCGTCTNGTTTTCNGTCAGTGAAATAGGGGGGAAAAACAGATGTAAAT 1301 consensus_6934#1 -------------------------- consensus_6934#2 -------------------------- consensus_6934#0 TCACGAACTCTAACATATAAAACCAT 1327 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||