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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1438 fasta sequence
[GCGTACTGACGGTACCGATAGAGGTAGAGTAGTAGTAGGGAGACTAAATAAGTGCTGCTGTTTTTCGAGTTTTTGGCACACTTGCGGTCTAGTTTTACGTTTTATTCATATTTCCTATTAAAGAAGCAGCAACGAGAACCGGCTGCCCAGATACGTACTGAGGCAAATTGCTGAAGAATTATCCACATTTCTTTAGTCAGTTTAGCAACGAACGAAAGGATCGCGCTCGCGCGCGTGCGTGTTTGTGTGTACAGTGATTGAATAGTTACACTAAGGTACGCCTGGGAGCACGGAAGCCTCAACGGGCGAAAGGCGGATTGGCGTTACGGATAAGTGGCACAAAGCAACCGACCAACCACATAATTTACATACGGTACACTAGGTATCATTGCCATCAAGGATAAAATAAACGTATCCCC-CCGCGTCGGACAAGTTCTTGGAATGCAATGGAGTCCG-AATGGTATGCGAAAGCGATGTGTGTACGATAGAAAAGCTAGGCGATAACATTTCCATTCAGTTCGATCGCGAAACGCCCAAACGGCTGAGCGCGGTGCAGAAGGGGTGGAGGAGAATTTATTATCAATTATTAATTTACACTACAAGCTTCTTCTTTGGCTAGGGTTTAGGGTTGAAAGGGTTGACCCCATGGTAGTAACGTGGACGCACAGAGAACGCGCGAATAATAACGTGTAATAATAGTGAAATTAACGCTAGCTAAGGTAACATTTCCTATCGATCATTCCAATCGC-TTTTTTCTAGCATCGGCGCTCTTAGATACCATGGATAAATGCCTAAAGTATTGACAACTAGTAATAAAGCAGGGACATTAGTAGGTGGGCTAAACATTCGCAAATTGGCGGGCCTCAATTAGGAGCGCTGAAACGGGGAAAACGCTCGGAATTGGGGCTAGTATAATAAATATGCAATTGAAAACGGAAAGTAACACCTACAACACTATGAAATATGGGACACGACCGACCGATTCTGAGGACCGTGGAAAAGAATCAATCCTACACCACACAATGCTGGAACCAGAGCTGAGATATAATTGCTGCGAGATAGGAAGTGAGAGAGAGAGAAAGAGAGGAAAAACAAAACCTCCGAACCCGGAACGGATTTGTTGAGGTTTGTGGCTTGCTTTTTATATACACTTATATTATATATTTAGCTACCCGATTTCTCCGCCAGACGTAAAACGTTAACCCTGTCCCCAGGTTTTTTTCGATTTTTGTAACCCATCATCTATATAGTAGATAATGTGCATTTTTGTCATTTAACGCATACACCGTTAGTATATCACCGTGTGTAATGGAACCGGAAACCCGTTGTTTTGGCGGGTAAGGGCGCATTATTGTGTAGTAGCTATAACTATAATTATATCGATACATTAGTGTACTTAAGTCCGCGGAAGAGATGATCACATTAAAATATGAACAGC]
[+] EMBL BX628057 [GCGTACTGACGGTACCGATAGAGGTAGAGTAGTAGTAGGGAGACTAAATAAGTGCTGCTGTTTTTCGAGTTTTTGGCACACTTGCGGTCTAGTTTTACGTTTTATTCATATTTCCTATTAAAGAAGCAGCAACGAGAACCGGCTGCCCAGATACGTACTGAGGCAAATTGCTGAAGAATTATCCACATTTCTTTAGTCAGTTTAGCAACGAACGAAAGGATCGCGCTCGCGCGCGTGCGTGTTTGTGTGTACAGTGATTGAATAGTTACACTAAGGTACGCCTGGGAGCACGGAAGCCTCAACGGGCGAAAGGCGGATTGGCGTTACGGATAAGTGGCACAAAGCAACCGACCAACCACATAATTTACATACGGTACACTAGGTATCATTGCCATCAAGGATAAAATAAACGTATCCCC CCGCGTCGGACAAGTTCTTGGAATGCAATGGAGTCCG AATGGTATGCGAAAGCGATGTGTGTACGATAGAAAAGCTAGGCGATAACATTTCCATTCAGTTCGATCGCGAAACGCCCAAACGGCTGAGCGCGGTGCAGAAGGGGTGGAGGAGAATTTATTATCAATTATTAATTTACACTACAAGCTTCTTCTTTGGCTAGGGTTTAGGGTTGAAAGGGTTGACCCCATGGTAGTAACGTGGACGCACAGAGAACGCGCGAATAATAACGTGTAATAATAGTGAAATTAACGCTAGCTAAGGNAACATTTCCTATCGATCATTCCNATCGC TTTTTTCTAGCATCGGCGCTCTTANATACCATGGATAAAT ]
[+] EMBL BX606178 [ GCGTTACGGATAAGTGGCACAAAGCAACCGACCAACCACATAATTTACATACGGTACACTAGGTATCATTGCCATGAAGGATAAGATAAACGTACCCCCTCCGCGACGGACAAGTTCTTGGAATGCAATGGAGTCCGAAATGATATGCGAAAGCGATGTGTGTACGATAGAAAAGCTAGGCGATAACATTTCCATTCGGTTCGATCGCGAAACGCCCAAACGGCTGAGCGCGGTGCAGAAGGGGTGGAGGAGAATTTATTATCAATTATTAATTTACACTACAAGCTTCATCTTTGGCTAGGGTTTAGGGTTGAAAGGGTTGACCCCATGGTAGTAACGTGGACGCACAGAGAGCGCGCGAATAATAACGTGTAATAATAGTGAAATTAACGCTAGCTAAGGTAAGATTTCCTATCGATCATTCCAATCGCTTTTTTTCTAGCATCGGCGCTCTTAGATACCATGGATAAATGCCTAAAGTATTGACAACTAGTAATAAAGCAGGGACATTAGTAGGTGGGCTAAACATTCGCAAATTGGCGGGCCTCAATTAGGAGCGCTGAAACGGGGAAAACGCTCGGAATTGGGGCTAGTATAATAAATATGCAATTGAAAACGGAAAGTAACACCTACAACACTATGAAATATGGGACACGACCGACCGATTCTGAGGACCGTGGAAAAGAATCAATCCTACACCACACAATGCTGGAACCAGAGCTGAGATATAATTGCTGCGAGATAGGAAGTGAGAGAGAGA ]
[+] EMBL BM614166 [ ccGAGGAGAATTTATTATCAATTATTAATTTACACTACAAGCTTCTTCTTTGGCTAGGGTTTAGGGTTGAAAGGGTTGACCCCATGGTAGTAACGTGGACGCACAGAGAACGCGCGAATAATAACGTGTAATAATAGTGAAATTAACGCTAGCTAAGGTAACATTTCCTATCGATCATTCCAATCGC TTTTTTCTAGCATCGGCGCTCTTAGATACCATGGATAAATGCCTAAAGTATTGACAACTAGTAATAAAGCAGGGACATTAGTAGGCGGGCTAAACATTCGCAAATTGGCGGGCCTCAATTAGGAGCGCTGAAACGAGGGAAACGCTCGGAATTGGGGCTAGTATAATAAATATGTAATTGAAAACGG ]
[+] EMBL BX609370 [ GCGCTCTTACATTCCATGGATAAATGCCTAAAGTATTGACAACTAGTAATAAAGCAGGGACATTAGTAGGTGGGCTAAACATTCGCAAATTGGCGGGCCTCAATTAGGAGCGCTGAAACGGGGAAAACGCTCGGAATTGGGGCTAGTATAATAAATATGCAATTGAAAACGGAAAGTAACACCTACAACACTATGAAATATGGGACACGACCGACCGATTCTGAGGACCGTGGAAAAGAATCAATCCTACACCACACAATGCTGGAACCAGAGCTGAGATATAATTGCTGCGAGATAGGAAGTGAGAGAGAGAGAAAGAGAGGAAAAACAAAACCTCCGAACCCGGAACGGATTTGTTGAGGTTTGTGGCTTGCTTTTTATATACACTTATATTATATATTTAGCTACCCGATTTCTCCGCCAGACGTAAAACGTTAACCCTGTCCCCAGGTTTTTTTCGATTTTTGTAACCCATCATCTATATAGTAGATAATGTGCATTTTTGTCATTTAACGCATACACCGTTAGTATATCACCGTGTGTAATGGAACCGGAAACCCGTTGTTTTGGCGGGTAAGGGCGCATTATTGTGTAGTAGCTATAACTATAATTATATCGATACATTAGTGTACTTAAGTCCGCGGAAGAGATGATCACATTAAAATATGAACAGC]
[+] EMBL BX610236 [ TCGCAAATGGGCGGGCCTCAATTAGGAGCGCGGAAACGGGGAAAACGCTCGGAATGGGGGCTAGTATAATAAATACGCAATGGAAAACGGAAAGTAACACCTACAA ]
consensusID : consensus_6938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[GCCAAGAATTCGGCACGATGGTGACAACTAGTAATAAAGCAGGGACATTAGTAGGCGGGCTAAACATTCGCAAATTGGCGGGCCTCAATTAGGAGCGCTGAAACGAGGGAAACGCTCGGAATTGGGGCTAGTATAATAAATATGTAATTGAAAACGGAAAGTAACACCTACAACACTATGAAATATGGGACACGACCGACCGATTCTGAGGACCGTGGTAAAGAATCAATCCTACACCACACAATGCTGGAACCAGAGCTGAGATATAATTGCTGCGAGATAGGAAGTGAGAGAGAGAGAGAGAGAGAAAGAGAGGGAAAACAAAACATCCGAACCCGGAACGGATTTGTTCGAGGTATTAGTGGCTTGCTTTTTATATACACTTATATTATATATTTAGCTACCCGATTTCTCCGCCAGACGTAAAACGTTAACCCTGGTCCCCAGGTTTNNAGCNNGTTCGATTTNTAGTAACCCATCATCTATATAGTAGATATGTGCATTTTTGTCATTTAACGCATACACCGTTTAGGTATATCACCGTGTGTAATAGAACCGGAAANCCGTTGATATGTCNGGCNGGTAAGGGCGCATTATTGTGTAGT]
[+] EMBL BX468364 [GCCAAGAATTCGGCACGATGGTGACAACTAGTAATAAAGCAGGGACATTAGTAGGCGGGCTAAACATTCGCAAATTGGCGGGCCTCAATTAGGAGCGCTGAAACGAGGGAAACGCTCGGAATTGGGGCTAGTATAATAAATATGTAATTGAAAACGGAAAGTAACACCTACAACACTATGAAATATGGGACACGACCGACCGATTCTGAGGACCGTGGTAAAGAATCAATCCTACACCACACAATGCTGGAACCAGAGCTGAGATATAATTGCTGCGAGATAGGAAGTGAGAGAGAGAGAGAGAGAGAAAGAGAGGGAAAACAAAACATCCGAACCCGGAACGGATTTGTTCGAGGTATTAGTGGCTTGCTTTTTATATACACTTATATTATATATTTAGCTACCCGATTTCTCCGCCAGACGTAAAACGTTAACCCTGGTCCCCAGGTTTNNAGCNNGTTCGATTTNTAGTAACCCATCATCTATATAGTAGATATGTGCATTTTTGTCATTTAACGCATACACCGTTTAGGTATATCACCGTGTGTAATAGAACCGGAAANCCGTTGATATGTCNGGCNGGTAAGGGCGCATTATTGTGTAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6938#0 GCGTACTGACGGTACCGATAGAGGTAGAGTAGTAGTAGGGAGACTAAATAAGTGCTGCTG 60
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 TTTTTCGAGTTTTTGGCACACTTGCGGTCTAGTTTTACGTTTTATTCATATTTCCTATTA 120
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 AAGAAGCAGCAACGAGAACCGGCTGCCCAGATACGTACTGAGGCAAATTGCTGAAGAATT 180
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 ATCCACATTTCTTTAGTCAGTTTAGCAACGAACGAAAGGATCGCGCTCGCGCGCGTGCGT 240
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 GTTTGTGTGTACAGTGATTGAATAGTTACACTAAGGTACGCCTGGGAGCACGGAAGCCTC 300
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 AACGGGCGAAAGGCGGATTGGCGTTACGGATAAGTGGCACAAAGCAACCGACCAACCACA 360
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 TAATTTACATACGGTACACTAGGTATCATTGCCATCAAGGATAAAATAAACGTATCCCCC 420
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 CGCGTCGGACAAGTTCTTGGAATGCAATGGAGTCCGAATGGTATGCGAAAGCGATGTGTG 480
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 TACGATAGAAAAGCTAGGCGATAACATTTCCATTCAGTTCGATCGCGAAACGCCCAAACG 540
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 GCTGAGCGCGGTGCAGAAGGGGTGGAGGAGAATTTATTATCAATTATTAATTTACACTAC 600
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 AAGCTTCTTCTTTGGCTAGGGTTTAGGGTTGAAAGGGTTGACCCCATGGTAGTAACGTGG 660
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 ACGCACAGAGAACGCGCGAATAATAACGTGTAATAATAGTGAAATTAACGCTAGCTAAGG 720
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 TAACATTTCCTATCGATCATTCCAATCGCTTTTTTCTAGCATCGGCGCTCTTAGATACCA 780
consensus_6938#1 -----------------------------------------------------------G 1
consensus_6938#0 TGGATAAATGCCTAAAGTATTGACAACTAGTAATAAAGCAGGGACATTAGTAGGTGGGCT 840
consensus_6938#1 CCAAGAATTCGGCACGATGGTGACAACTAGTAATAAAGCAGGGACATTAGTAGGCGGGCT 61
* ** * * * ********************************** *****
consensus_6938#0 AAACATTCGCAAATTGGCGGGCCTCAATTAGGAGCGCTGAAACGGGGAAAACGCTCGGAA 900
consensus_6938#1 AAACATTCGCAAATTGGCGGGCCTCAATTAGGAGCGCTGAAACGAGGGAAACGCTCGGAA 121
******************************************** ** ************
consensus_6938#0 TTGGGGCTAGTATAATAAATATGCAATTGAAAACGGAAAGTAACACCTACAACACTATGA 960
consensus_6938#1 TTGGGGCTAGTATAATAAATATGTAATTGAAAACGGAAAGTAACACCTACAACACTATGA 181
*********************** ************************************
consensus_6938#0 AATATGGGACACGACCGACCGATTCTGAGGACCGTGGAAAAGAATCAATCCTACACCACA 1020
consensus_6938#1 AATATGGGACACGACCGACCGATTCTGAGGACCGTGGTAAAGAATCAATCCTACACCACA 241
************************************* **********************
consensus_6938#0 CAATGCTGGAACCAGAGCTGAGATATAATTGCTGCGAGATAGGAAGTGAGAGAGAGAGA- 1079
consensus_6938#1 CAATGCTGGAACCAGAGCTGAGATATAATTGCTGCGAGATAGGAAGTGAGAGAGAGAGAG 301
***********************************************************
consensus_6938#0 -------AAGAGAGGAAAAACAAAACCTCCGAACCCGGAACGGATTTGTT-GAGGTTT-- 1129
consensus_6938#1 AGAGAGAAAGAGAGGGAAAACAAAACATCCGAACCCGGAACGGATTTGTTCGAGGTATTA 361
******** ********** *********************** ***** *
consensus_6938#0 GTGGCTTGCTTTTTATATACACTTATATTATATATTTAGCTACCCGATTTCTCCGCCAGA 1189
consensus_6938#1 GTGGCTTGCTTTTTATATACACTTATATTATATATTTAGCTACCCGATTTCTCCGCCAGA 421
************************************************************
consensus_6938#0 CGTAAAACGTTAACCCTG-TCCCCAGGTTTTT------TTCGATTTTT-GTAACCCATCA 1241
consensus_6938#1 CGTAAAACGTTAACCCTGGTCCCCAGGTTTNNAGCNNGTTCGATTTNTAGTAACCCATCA 481
****************** *********** ******** * ***********
consensus_6938#0 TCTATATAGTAGATAATGTGCATTTTTGTCATTTAACGCATACACCGTT--AGTATATCA 1299
consensus_6938#1 TCTATATAGTAGATA-TGTGCATTTTTGTCATTTAACGCATACACCGTTTAGGTATATCA 540
*************** ********************************* ********
consensus_6938#0 CCGTGTGTAATGGAACCGGAAACCCGTTGTT----TTGGCGGGTAAGGGCGCATTATTGT 1355
consensus_6938#1 CCGTGTGTAATAGAACCGGAAANCCGTTGATATGTCNGGCNGGTAAGGGCGCATTATTGT 600
*********** ********** ****** * *** *******************
consensus_6938#0 GTAGTAGCTATAACTATAATTATATCGATACATTAGTGTACTTAAGTCCGCGGAAGAGAT 1415
consensus_6938#1 GTAGT------------------------------------------------------- 605
*****
consensus_6938#0 GATCACATTAAAATATGAACAGC 1438
consensus_6938#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||