These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1334 fasta sequence [CCGGTTTGCTGCTGTGTTTCGCGCAAAACAAGTGCCAACAAGGGAGGGGGTGGGGTGAAAAGCCCAGCGTACAACCAATTTCGGTGGACCGCGAGCCACACACGGGTCAGACATCAAGCGTGTCTCGAGCGAACCAGTCGTCGTCGTCGGGTCGCCTGGGTCGTCTGGGTCGGTCGCAGGCAGGACACGGTGTGCGTTAGTGTGCCCAAAGGGACAGCGGGAAAGGAAGGAAGTGATTGCGCCAACAAACGCCGTTTCCAGTGCCACCAGCACTGTGTTGTGAGTTTTGCGAGGGGTAGGGAGGTGTACAGTGTACTGGTGAAGCACACCAACATGGAGCAACCATGTGTGGTGCCGGAAATGGACTGATTTCGCTGTGATTTCGGTCCGTTCCGTCCATTTCCGTTTTTGGCTGGATCGATTGCGGTCTAAGGCAATCGCATCGACAAGCGTACGCCGTCGTCACCGTTCGTTCAGCACCGATCGCCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTACACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGTCCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGACAGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAAGTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGCACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCGATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGGGACGGGGCCGTGCTGGAAGGAGCGTGGTGCCGGCATTTTCTACATGCCGCACGGGCTCACGATCGACCACAACGGTAACATGTGGCTGACGGACGTGGCACTGCACCAGGTGTTCAAGTTTATGCCCGGTCGGGACTATCCCGCGATTACGCTGGGCCATCGATTCGAGCCTGGCTCGTCCAAGAGCCATCTGTGCAAACCGACGGCCGTGGCGATTGCCAGCACGGGTGAGATCTTCGTCGTGGACGGGTACTGCAACAGCCGGCTGCTCAAGTACAATGCCGCGG] [+] EMBL BM645776 [CCGGTTTGCTGCTGTGTTTCGCGCAAAACAAGTGCCAACAAGGGAGGGGGTGGGGTGAAAAGCCCAGCGTACAACCAATTTCGGTGGACCGCGAGCCACACACGGGTCAGACATCAAGCGTGTCTCGAGCGAACCAGTCGTCGTCGTCGGGTCGCCTGGGTCGTCTGGGTCGGTCGCAGGCAGGACACGGTGTGCGTTAGTGTGCCCAAAGGGACAGCGGGAAAGGAAGGAAGTGATTGCGCCAACAAACGCCGTTTCCAGTGCCACCAGCACTGTGTTGTGAGTTTTGCGAGGGGTAGGGAGGTGTACAGTGTACTGGTGAAGCACACCAACATGGAGCAACCATGTGTGGTGCCGGAAATGGACTGATTTCGCTGTGATTTCGGTCCGTTCCGTCCATTTCCGTTTTTGGCTGGATCGATTGCGGTCTAAGGCAATCGCATCGACAAGCGTACGCCGTCGTCACCGTTCGTTCAGCACCGATCGCCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTACACGGTACCGCGCGATACCGACATCCTGCT ] [+] EMBL BM645053 [ cCGCAAAACAAGTGCCAACAAGGGAGGGGGTGGGGTGAAAAGCCCAGCGTACAACCAATTTCGGTGGACCGCGAGCCACACACGGGTCAGACATCAAGCGTGTCTCGAGCGAACCAGTCGTCGTCGTCGGGTCGCCTGGGTCGTCTGGGTCGGTCGCAGGCAGGACACGGTGTGCGTTAGTGTGCCCAAAGGGACAGCGGGAAAGGAAGGAAGTGATTGCGCCAACAAACGCCGTTTCCAGTGCCACCAGCACTGTGTTGTGAGTTTTGCGAGGGGTAGGGAGGTGTACAGTGTACTGGTGAAGCACACCAACATGGAGCAACCATGTGTGGTGCCGGAAATGGACTGATTTCGCTGTGATTTCGGTCCGTTCCGTCCATTTCCGTTTTTGGCTGGATCGATTGCGGTCTAAGGCAATCGCATCGACAAGCGTACGCCGTCGTCACCGTTCGTTCAGCACCGATCGCCATCATCATCATTCTACGCGGCGTAAGTCGTCC ] [+] EMBL BM614373 [ CCGCAACGATGAGGATGAACCAAATGCTGCCGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTATACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGTCCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGACAGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAAGTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGCACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCGATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGGGACGGGGCCGTGCTGGAAGGAGCGTGGTGCCGGCATTTTCTACATGCCGCACGGGCTCACGATCGACCACAACGGTAACATGTGGCTGACGGACGTGGCACTGCACCAGGTGTTCAAGTTTATGCCCGGTCGGGACTAT ] [+] EMBL BM631996 [ cCGGGACGGGGCCGTGCTGG AGGAGCGTGGTGCCGGCATTTTCTACATGCCGCACGGGCTCACGATCGACCACAACGGTAACATGTGGCTGACGGACGTGGCACTGCACCAGGTGTTCAAGTTTATGCCCGGTCGGGACTATCCCGCGATTACGCTGGGCCATCGATTCGAGCCTGGCTCGTCCAAGAGCCATCTGTGCAAACCGACGGCCGTGGCGATTGCCAGCACGGGTGAGATCTTCGTCGTGGACGGGTACTGCAACAGCCGGCTGCTCAAGTACAATGCCGCGG] consensusID : consensus_6942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CCGCGGACGCGTGGGTTGCGGTCTAAGGCAATCGCAGCGTACAAGCGTACGCCGTCGTCACATCGTTCAGCACCGATCGCCATCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAGCAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAATGCTGCCGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTATACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGTCCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGACAGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAAGTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGCACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCGATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGG] [+] EMBL BM624753 [CCGCGGACGCGTGGGTTGCGGTCTAAGGCAATCGCAGCGTACAAGCGTACGCCGTCGTCACATCGTTCAGCACCGATCGCCATCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAGCAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAATGCTGCCGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTATACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGTCCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGACAGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAAGTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGCACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCGATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGG] consensusID : consensus_6942#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCATGTTGTTAAACATATGGTATCCCTTTCCCTTGGTGTTAACAGGGAACATCACCATCGGTAGAGCTTTAAAGCCAGCTAAAAACCTTCACCATTCTCCGTAGTTCTAATTTTGTTCGATTGTTTTTCTTTCCCGTTTATTTCTTTACGGTTTCGATACGGGACGCGGCACCCGTTCGCAGAATCGCATCGACAAGCGTACGCCGTCGTCACCGTTCGTTCAGCACCGATCGCCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTACACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGATGCGCTCGGTGGTGGTGCTGCTGCCGGTCCGGCGGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTGGAC] [+] EMBL BM644250 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCATGTTGTTAAACATATGGTATCCCTTTCCCTTGGTGTTAACAGGGAACATCACCATCGGTAGAGCTTTAAAGCCAGCTAAAAACCTTCACCATTCTCCGTAGTTCTAATTTTGTTCGATTGTTTTTCTTTCCCGTTTATTTCTTTACGGTTTCGATACGGGACGCGGCACCCGTTCGCAGAATCGCATCGACAAGCGTACGCCGTCGTCACCGTTCGTTCAGCACCGATCGCCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTACACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGATGCGCTCGGTGGTGGTGCTGCTGCCGGTCCGGCGGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6942#0 CCGGTTTGCTGCTGTGTTTCGCGCAAAACAAGTGCCAACAAGGGAGGGGGTGGGGTGAAA 60 consensus_6942#1 ------------------------------------------------------------ consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 AGCCCAGCGTACAACCAATTTCGGTGGACCGCGAGCCACACACGGGTCAGACATCAAGCG 120 consensus_6942#1 ------------------------------------------------------------ consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 TGTCTCGAGCGAACCAGTCGTCGTCGTCGGGTCGCCTGGGTCGTCTGGGTCGGTCGCAGG 180 consensus_6942#1 ------------------------------------------------------------ consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 CAGGACACGGTGTGCGTTAGTGTGCCCAAAGGGACAGCGGGAAAGGAAGGAAGTGATTGC 240 consensus_6942#1 ------------------------------------------------------------ consensus_6942#2 ------------------------------------------------CCGCCCACGCGT 12 consensus_6942#0 GCCAACAAACGCCGTTTCCAGTGCCACCAGCACTGTGTTGTGAGTTTTGCGAGGGGTAGG 300 consensus_6942#1 ------------------------------------------------------------ consensus_6942#2 CCGCCCACGCGTCCGGTTCCATGTTGTTAAACATATGGTATCCCTTTCCCTTGGTGTTAA 72 consensus_6942#0 GAGGTGTACAGTGTACTGGTGAAGCACACCAACATGGAGCAACCATGTGTGGTGCCGGAA 360 consensus_6942#1 ------------------------------------------------------------ consensus_6942#2 CAGGGAACATCACCATCGGTAGAGCTTTAAAGCCAGCTAAAAACCTTCACCATTCTCCGT 132 consensus_6942#0 ATGGACTGATTTCGCTGTGATTTCGGTCCGTTCCGTCCATTTCCGTTTTTGGCTG-GATC 419 consensus_6942#1 ----------------------------------------------CCGCGGACG-CGTG 13 consensus_6942#2 A-GTTCTAATTTTGTTCGATTGTTTTTCTTTCCCGTTTATTTCTTTACGGTTTCGATACG 191 * consensus_6942#0 GATTGCGGT-----CTAAGGCAATCGCATCG-ACAAGCGTACGCCGTCGTCACCGTTCGT 473 consensus_6942#1 GGTTGCGGT-----CTAAGGCAATCGCAGCGTACAAGCGTACGCCGTCGTCAC--ATCGT 66 consensus_6942#2 GGACGCGGCACCCGTTCGCAGAATCGCATCG-ACAAGCGTACGCCGTCGTCACCGTTCGT 250 * **** * ******* ** ********************* **** consensus_6942#0 TCAGCACCGATCGCCATCATCATCAT---TCTACGCGGCGTAAGTCGTCCGCCGTTCAAC 530 consensus_6942#1 TCAGCACCGATCGCCATCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAAC 126 consensus_6942#2 TCAGCACCGATCGCCATCATCATCAT---TCTACGCGGCGTAAGTCGTCCGCCGTTCAAC 307 ************************** ******************************* consensus_6942#0 AACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAAC 590 consensus_6942#1 AGCAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAAC 186 consensus_6942#2 AACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAAC 367 * ********************************************************** consensus_6942#0 CAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCC 650 consensus_6942#1 CAAATGCTGCCGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCC 246 consensus_6942#2 CAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCC 427 **** ***** ************************************************* consensus_6942#0 TACACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGG 710 consensus_6942#1 TATACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGG 306 consensus_6942#2 TACACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGG 487 ** ********************************************************* consensus_6942#0 GACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGT 770 consensus_6942#1 GACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGT 366 consensus_6942#2 GACCTGTTTGCCGAGCGCGCGTACGAAGATGCGCTCGGT---GGTGGTGCTGCTGCCGGT 544 ***************************** ********* ************** *** consensus_6942#0 CCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGAC 830 consensus_6942#1 CCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGAC 426 consensus_6942#2 CCGGCGGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTGGAC 604 **** ************************************************** *** consensus_6942#0 AGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAA 890 consensus_6942#1 AGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAA 486 consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 GTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGC 950 consensus_6942#1 GTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGC 546 consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 ACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCG 1010 consensus_6942#1 ACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCG 606 consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 ATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGGGACGGGGCCGTGCTGGAAGGAGC 1070 consensus_6942#1 ATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGG----------------------- 643 consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 GTGGTGCCGGCATTTTCTACATGCCGCACGGGCTCACGATCGACCACAACGGTAACATGT 1130 consensus_6942#1 ------------------------------------------------------------ consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 GGCTGACGGACGTGGCACTGCACCAGGTGTTCAAGTTTATGCCCGGTCGGGACTATCCCG 1190 consensus_6942#1 ------------------------------------------------------------ consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 CGATTACGCTGGGCCATCGATTCGAGCCTGGCTCGTCCAAGAGCCATCTGTGCAAACCGA 1250 consensus_6942#1 ------------------------------------------------------------ consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 CGGCCGTGGCGATTGCCAGCACGGGTGAGATCTTCGTCGTGGACGGGTACTGCAACAGCC 1310 consensus_6942#1 ------------------------------------------------------------ consensus_6942#2 ------------------------------------------------------------ consensus_6942#0 GGCTGCTCAAGTACAATGCCGCGG 1334 consensus_6942#1 ------------------------ consensus_6942#2 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||