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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1369 fasta sequence
[CCCCCGACCGCGACAACCACCCCGNTNTGCATGCTCGAGCAGAATGCCAGCNGGTTGTAGCAGAACGTCAGTGCAGTGTGTCGAATTTCGCCCTAAATCTGTGCATACGTGCGTGTTGTGATTCCCAATTCCAAGCAGTATCCCCAGAATACCTTAACTTTTGAACTTAAATCCACCCATGGCGCTATCCGTACAGCCGTCCATCGNAAGTCGCAAAGCCGGAGATGACAAGCCCGGAAGCGTCCCCAAGCAGGCTCAAAGGTCAAACCGGNAGAGGCCGCTACAACACAANCCGAAAACNCGGTCACGGGGCGGCGCGCGNAANGTTGGATCATGGAAACATACAACGGAAAATCCCGGGGAGCGTTCAATTCATTTTCAACCAGGTTCCACTCAAATTCGAACCAGGGACGGCCTNCGGCGGTTCCAATACATTCAAACAACTTCCGGACATTCAGGAACCCTTCCGAACAGGACAGCGAATCAGGGGNCACACATGGNGGCCCNACAGCAACTCTGNGTTCGNACACGATTTGCGTTTCCCTCCCCGTGGAGACCCNAACNGCCANGGCCNTCACAAACNAGCTATTCCCACGNGCNGCGGTTTTCGCGAGCGCATACGAAATTAAAACGCCTTTGGGGCCGTTGGCANCCCANNCGCCATGCNGCGCAGAAACACATTCGGNTAGGNTNTACNTTCCATCAAAACGCAGCGGCCCCNAGCGTTTGAGGNCCCACTTAACNCCAAGCCTCACTNTGGGGCTGNAACGGAATCGCACCACATNCCAATTAAATTTGGCCCCTTCGGCGCAATTCTANGGGAACGAACATTNNGACAACANCCCCNCAAGTGAGTATCAACAGCACNTTAGGTGCNATCCCAATCAGAGGTGTCATCGGCAAACAAGCCGGCAGGGAAACCAGAGCTGGACCCNCCCAAAAAAAGCCCCCGAGGANAGAANCACACCGCAGACACGGAATCATGGCCGNACAAAAATCGNGACGTTACAGCACTGGCGAACCCGCGGAGGGCGGAAGCATNCACACATTCGGGCCNAACATCNGGCACNAGNGCACAAACCGCNGAGTCCGGCCCACACNTACGCCAACCGCGCCACCACCCAGACGGAAAGACCCCGGCAACACACAAGACTNGACGCGACACAGACCCACNAAGCGACNGTGGCGGCAACAATGAGACANGCCGAATACACGCCGGNGCCCAAATCCCGGGATAAAACAANCAGACGTCACCAAGGGGCCGAANAAGCACCACAANCTCACACCAGGGNAGCTACAGGAGTNACCCAAANGCACCAGACCACCCAACAGGGCNAGCCCCCACCTAACACACATCACAANCGACANC]
[+] EMBL AL697171 [CCCCCGACCGCGACAACCACCCCGNTNTGCATGCTCGAGCAGAATGCCAGCNGGTTGTAGCAGAACGTCAGTGCAGTGTGTCGAATTTCGCCCTAAATCTGTGCATACGTGCGTGTTGTGATTCCCAATTCCAAGCAGTATCCCCAGAATACCTTAACTTTTGAACTTAAATCCACCCATGGCGCTATCCGTACAGCCGTCCATCGNAAGTCGCAAAGCCGGAGATGACAAGCCCGGAAGCGTCCCCAAGCAGGCTCAAAGGTCAAACCGGNAGAGGCCGCTACAACACAANCCGAAAACNCGGTCACGGGGCGGCGCGCGNAANGTTGGATCATGGAAACATACAACGGAAAATCCCGGGGAGCGTTCAATTCATTTTCAACCAGGTTCCACTCAAATTCGAACCAGGGACGGCCTNCGGCGGTTCCAATACATTCAAACAACTTCCGGACATTCAGGAACCCTTCCGAACAGGACAGCGAATCAGGGGNCACACATGGNGGCCCNACAGCAACTCTGNGTTCGNACACGATTTGCGTTTCCCTCCCCGTGGAGACCCNAACNGCCANGGCCNTCACAAACNAGCTATTCCCACGNGCNGCGGTTTTCGCGAGCGCATACGAAATTAAAACGCCTTTGGGGCCGTTGGCANCCCANNCGCCATGCNGCGCAGAAACACATTCGGNTAGGNTNTACNTTCCATCAAAACGCAGCGGCCCCNAGCGTTTGAGGNCCCACTTAACNCCAAGCCTCACTNTGGGGCTGNAACGGAATCGCACCACATNCCAATTAAATTTGGCCCCTTCGGCGCAATTCTANGGGAACGAACATTNNGACAACANCCCCNCAAGTGAGTATCAACAGCACNTTAGGTGCNATCCCAATCAGAGGTGTCATCGGCAAACAAGCCGGCAGGGAAACCAGAGCTGGACCCNCCCAAAAAAAGCCCCCGAGGANAGAANCACACCGCAGACACGGAATCATGGCCGNACAAAAATCGNGACGTTACAGCACTGGCGAACCCGCGGAGGGCGGAAGCATNCACACATTCGGGCCNAACATCNGGCACNAGNGCACAAACCGCNGAGTCCGGCCCACACNTACGCCAACCGCGCCACCACCCAGACGGAAAGACCCCGGCAACACACAAGACTNGACGCGACACAGACCCACNAAGCGACNGTGGCGGCAACAATGAGACANGCCGAATACACGCCGGNGCCCAAATCCCGGGATAAAACAANCAGACGTCACCAAGGGGCCGAANAAGCACCACAANCTCACACCAGGGNAGCTACAGGAGTNACCCAAANGCACCAGACCACCCAACAGGGCNAGCCCCCACCTAACACACATCACAANCGACANC]
consensusID : consensus_6943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1023 fasta sequence
[CCGGTTCTGCCACATTCCCGCAACATCCGATCACGGTGTCGATGGTGCGTGGTGTGCGCGGTGCGCGTTCGTGCAAAGTCCGTCGTCAGTGAGGTTATCAACGTGCAGAACGTCAGTGCAGTGTGTCGAATTTCGCCCTAAATCTGTGCATACGTGCGTGTTGTGATTCCCAATTCCAAGCAGTATCCCCAGAATACCTTAACTTTTGAA-CT-----TAAA-----TCCACCATGGGCTATCGTCGCCGTCATCGAAGTCGCAGCCGGGATGACAGCCCGGAGCGTTCCAGCGGCTCAAGGTCAACGGAGGCGCTACAAC-AACAAAACGTCACGG-CCGGCGAAGGTGATCATGAAACATCAGGAAATCGGACGTCATCTTCACGTCATCATCACAGGAGCTCGCGTCATCATCAACACTCCGATCGACCTCGAAGACGTCGGGAACGGCCAGAATGGTTGAAGATGATTCTCCGTGCCCAGCGTCAGTTCGTGTGGGCGATACTGATGACGGTGGGACTGTGTCTCAAGCGCGGTGCTCAGTTGGTGAGCGATATGCTGCTGGGTGCTCCGGTAGCTGCACCGGTCGAAGGTCGTCCCCAACCGGG-ACCGAGTGGAATGGATCGTTC-GGGATATGCTGCGGGAGGTGCTTCCAGCTCGACGGCAGTAGCAACCAGGGGCAGCAGTACGCTCGTAAGATCTGCTTCTTTTGACGATCCAGCGACTGTGCCTAACAGGAGAGCGATCGTACCACCGGAAGATCTTGACTGATGTGCTTTAGTACCTGAAGAAGGTTCACTTATAGCAAAGGTGTCGGAAACAGAAAGACTTGCCCTATACGTTAAAGACTCAATAATACGTAGCACTATTGAAGAAAGCAAATAGCTAACCTGAGCTTCAAAAAGCAGCATCTTTA-AGTCGTTACTGCAGGTCAAGAGATTTATAAATCCCATTATGTGTTAGGCTTAGTATTGAACCAGACGTCATTATCTCTCTCCTTTTACCTCTGTGTTACCCTGAATAAACTGTTTTTGT]
[+] EMBL BM653241 [CCGGTTCTGCCACATTCCCGCAACATCCGATCACGGTGTCGATGGTGCGTGGTGTGCGCGGTGCGCGTTCGTGCAAAGTCCGTCGTCAGTGAGGTTATCAACGTGCAGAACGTCAGTGCAGTGTGTCGAATTTCGCCCTAAATCTGTGCATACGTGCGTGTAGTGATTCCCAATTCCAAGCAGTATCCTCAGAATACCTCAACTTTTTAAGCTAATTCTAAACCCACTCCACCATGGGCTATCGTCGACGTCATCGAAGTCGCAGCCGGGATGACAGTCCGGAGCGTTCCAGCGGCTCAAGGTCAACGGAGGCGCTACAAC AACAAAACGTCACGG CCGGCGAAGGTGATCATGAAACATCAGGCCATCGGACGTCATCTTCACGTCATCATCACAGGAGCTCGCGTCATCATCAACACTCCGATCGACCTCGAAGACGTCGGGAACGGCCAGAATGGTTGAAGATGATTCTCCGTGCCCAGCGTCAGTTCGTGTGGGCCATACTGATGACGGTGGGTCTGTGTCTCAAGCGCGGTGCTCAGTTGGTGAGCGATATGCTGCTGGGTGCTCCGGTAGCTGCACCGGTCGAAGGTCGTCCCCAACCGGGTACCGAGTGGAATGGATCGTTCGGGGATATGCTG ]
[+] EMBL BX619257 [ TCGGTGGTGCGTGGTGTGCGCGGTGCGTGATCGTGCAAAGTCCGTCGTCAGTGAGGTTATCAACGTGCAGAACGTCAGTGCAGTGTGTCGAATTTCGCCCTAAATCTGTGCATACGTGCGTGTTGTGATTCCCAATTCCAAGCAGTATCCCCAGAATACCTTAACTTTTGAA CT TAAA TCCACCATGGGCTATCGTCGCCGTCATCGAAGTCGCAGCCGGGATGACAGCCCGGAGCGTTCCAGCGGCTCAAGGTCAACGGAGGCGCTACAAC AACAAAACGTCACGG CCGGCGAAGGTGATCATGAAACTTCAGGAAATCGGACGTCATCTTCACGTCATCATCACAGGAGCTCGCGTCATCATCAACACTCCGATCGACCTCGAAGACGACGGGAACGGCCAGAATGGTTGAAGATGATTCTCCGTGCCCAGCGTCAGTTCGTGTGGGCGATACTGATGACGGTGGGACTGTGTCTCAAGCGCGGTGCTCAGTNGGTGAGCGATATGCTG ]
[+] EMBL BX611689 [ GTGTGTCGAATTTCGCCCTAAATCTGAGCATACGTGCGTGTTGTGATTCCCAATTCCAAGCAGTATCCCCAGAATACCTTAACTTTTGAA GT TAAA TCCACCATGGGCTATCGTCGCCGTCATCGAAGTCGCAGCCGGGATGACAGCCCGGAGCGTTCCAGCGGTTCAAGGTCAACGGAGGCGCTACAGC AACAAAACGTCACGG CCGGCGAAGGTGATCATGAAACATCATGAAATCGGACGTCATCTTCACGTCATCATCACAGGAGCTCGCGTCATCATCAACACTCCGATCGACCTCGAAGACGTCGGGAACGGCCAGAATGGTTGAAGATGATTCTCCGTGCCCAGCGTCAGTTCGTGTGGGCGATACTGATGACCGTTGGATTGTGTCTCAAGCGCGGTGCTCAGTTGGTGAGCGATATGCTGCTGGGTGCTCCGGTAGCTGCACCGGTCGAAGGTCGTCCCCAACCGGG ACCGAGTGGAATGGATCGTTC GGGATATGCTGCGGGAGGTGCTTCCAGCTCGACGGCAGTAGCAACCAGGGGCAGCAGTACGCTCGTAAGATCTGCTTCTTTTGACGATCCAGCGACTGTGCCTAACAGGAGAGCGATCGTACCACCGGAAGATCTTGACTGATGTGCTTTAGTACCTGAAGAAGGTTCACTTATAGCAAAGGTGTCGGAAACAGAAAGA ]
[-] EMBL BX611688 [ ggTACAGCAAACAAAACGTCACGGCCCGGCGAAGGTGATCATGAAACATCATGAAATCGGACGTCATCTTCACGTCATCATCACAGGAGCTCGCGTCATCATCAACACTCCGATCGACCTCGAAGACGTCGGGAACGGCCAGAATGGTTGAAGATGATTCTCCGTGCCCAGCGTCAGTTCGTGTGGGCGATACTGATGACCGTTGGATTGTGTCTCAAGCGCGGTGCTCAGTTGGTGAGCGATATGCTGCTGGGTGCTCCGGTAGCTGCACCGGTCGAAGGTCGTCCCCAACCGGG ACCGAGTGGAATGGATCGTTC GGGATATGCTGCGGGAGGTGCTTCCAGCTCGACGGCAGTAGCAACCAGGGGCAGCAGTACGCTCGTAAGATCTGCTTCTTTTGACGATCCAGCGACTGTGCCTAACAGGAGAGCGATCGTACCACCGGAAGATCTTGACTGATGTGCTTTAGTACCTGAAGAAGGTTCACTTATAGCAAAGGTGTCGGAAACAGAAAGACTTGCCCTATACGTTAAAGACTCAATAATACGTAGCACTATTGAAGAAAGCAAATAGCTAACCTGAGCTTCAAAAAGCAGCATCTTTA AGTCGTTACTGCAGGTCAAGAGATTTATAAATCCCATTATGTGTTAGGCTTAGTATTGAACCAGACGTCATTATCTCTCTCCTTTTACCTCTGTGTTACCCTGAATAAACTGTTTTTGT]
[+] EMBL BM619263 [ ccGGATCGTTC GGGATATGCTGCGGGAGGTGCTTCCAGCTCGACGGCAGTGGCAACCAGGGGCAGCAGTACGCTCGTAAGATCTGCTTCTTTTGATGATCCAGCGACTGTGCCTAACAGGAGAGCGATCGTACCACCGGAAGATCTTGACTGATGTGCTTTAGTACTAGAAGAAGGTTCGCTTATAGCAAAGGTGTCGGAAACAGAAAGACTTGCCCTATACGTTAAAGACTCAATAATACGTAGCACTATTGAAGAAAGCAAATAGCTAACCTGAACTTCAAAAAGCAGCATCTTTACGGTCGTTACTGCAGGTCAAGAGATTTGTAAATCCCATAATGTGTTAGGCTTAGTATTGAAACAGACGTCATTATTTCTCTCTTTTTACCTCTGAGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6943#0 -----------------------CCCCCGACCGCGACAACCAC-----------CCCGNT 26
consensus_6943#1 CCGGTTCTGCCACATTCCCGCAACATCCGATCACGGTGTCGATGGTGCGTGGTGTGCGCG 60
* **** * ** * * **
consensus_6943#0 NTGCATGCTCGAGCAGAAT-----GCCAGCN-GGTTGTA-----GCAGAACGTCAGTGCA 75
consensus_6943#1 GTGCGCGTTCGTGCAAAGTCCGTCGTCAGTGAGGTTATCAACGTGCAGAACGTCAGTGCA 120
*** * *** *** * * * *** **** * ****************
consensus_6943#0 GTGTGTCGAATTTCGCCCTAAATCTGTGCATACGTGCGTGTTGTGATTCCCAATTCCAAG 135
consensus_6943#1 GTGTGTCGAATTTCGCCCTAAATCTGTGCATACGTGCGTGTTGTGATTCCCAATTCCAAG 180
************************************************************
consensus_6943#0 CAGTATCCCCAGAATACCTTAACTTTTGAACTTAAATCCACCCATGGCGCTATCCGTACA 195
consensus_6943#1 CAGTATCCCCAGAATACCTTAACTTTTGAACTTAAATCCACC-ATGG-GCTATCGTCGCC 238
****************************************** **** ****** *
consensus_6943#0 GCCGTCCATCGNAAGTCGCAAAGCCGGAGATGACAAGCCCGGAAGCGTCCCCAAGCAGGC 255
consensus_6943#1 GTCATC-----GAAGTCGCA--GCCGG-GATGACA-GCCCGGA-GCGTTCC--AGC-GGC 285
* * ** ******** ***** ******* ******* **** ** *** ***
consensus_6943#0 TCAAAGGTCAAACCGGNAGAGGCCGCTACAACACAANCCGAAAACNCGGTCACGGGGCGG 315
consensus_6943#1 TCAA-GGTCAAC---GGAGGCGCTACAACAACAAAACGTCACGGCCGG----CGAAGGTG 337
**** ****** * ** ** * ****** ** * * * ** * *
consensus_6943#0 CGCGCGNAANGTTGGATCATGGAAACATA-CAACGGAAAATCCCGGGGAGCGTTCAATTC 374
consensus_6943#1 ATCATGAAACATCAGGAAATCGGACGTCATCTTCACGTCATCATCACAGGAGCTCGCGTC 397
* * ** * * ** * * * * * *** * * ** **
consensus_6943#0 ATTTTCAACCAGGTTCCACTCAAATTCGAACCAGGGACGGCCTNCGGCGGTTCCAATACA 434
consensus_6943#1 ATCATCAAC---ACTCCGATCGACCTCGAA-----GACG-TCGGGAACGGCCAGAATGGT 448
** ***** *** ** * ***** **** * *** ***
consensus_6943#0 TTCAAACAACTTCCGGACATTCAGGAACCCTTCCGAACAGGACAGCGAATCAGGGGNCAC 494
consensus_6943#1 TGAAGATGATTCTCCG-TGCCCAGCGTCAGTTCGTGTGGGCGATACTGATGACGGTGGG- 506
* * * * * * * *** * *** * * ** * **
consensus_6943#0 ACATGGNGGCCCNACAGCAACTCTGNGTTCGNACACGATTTGCGTTTCCCTCCCCGTGGA 554
consensus_6943#1 --ACTGTGTCTCAAGCGCGGTGCTCAGTTGGTGAGCGATATGCTGCTGGGTGCTC-CGGT 563
* * * * * * ** ** *** * **** *** * * * * **
consensus_6943#0 GACCCNAACNGCC-ANGGCCNTCACAAACNAGCTATTCCCACGNGCNGCGGTTTTCGCGA 613
consensus_6943#1 AGCTGCACCGGTCGAAGGTCGTCCCCAACCGGGA----CCGAGTGGAATGGATCGTTCGG 619
* * * * * * ** * ** * *** * ** * * ** * **
consensus_6943#0 GCGCATACGAAATTAAAACGCCTTTGGGGCCGTTGGCANCCCANNCGCCATGCNGCGCAG 673
consensus_6943#1 G---ATATGCTGCGGGAGGTGCTTCCAGCTCGACGGCAGT--AGCAACCA---GGGGCAG 671
* *** * * *** * ** **** * *** * ****
consensus_6943#0 AAACACATTCGGNTAGGNTNTACNTTCCATCAAAACGCAGCGGCCCCNAGCGTTTGAGGN 733
consensus_6943#1 CAGTACGCTCG--TAAGATCTGCTTCTTTTGACGATCCAGCGACTGTGCCTAACAGGAGA 729
* ** *** ** * * * * * * * * ***** * * *
consensus_6943#0 CCCACTTAACNCCAAGCCTCACTNTGGGGCTGNAACGGAATCGCACCACATNCCAATTAA 793
consensus_6943#1 GCGATCGTACCACCGGAAGATCTT---GACTGATGTGCTTTAGTACCTGAAGAAGGTTCA 786
* * ** * * ** * *** * * * *** * ** *
consensus_6943#0 ATT-TGGCCCCTTCGGCGCAATTCTANGGGAACGAACATTNNGACAACANCCCCNCAAGT 852
consensus_6943#1 CTTATAGCAAAGGTGTCGGAAACAGAAAGACTTGCCCTATACGTTAAAGACTCAATAA-T 845
** * ** * ** ** * * * * * * ** * * ** *
consensus_6943#0 GAGTATCAACAGCACNTTAGGTGCNATCCCAATCAGAGGTGTCATCGGCAAACAAGCCGG 912
consensus_6943#1 ACGTAGCACTATTGAAGAAAGCAAATAGCTAACCTGAGCT-TCAAAAAGCAGCATCTTTA 904
*** ** * * * * ** * *** * *** * **
consensus_6943#0 CAGGGAAACCAGAGCTGGACCCNCCCAAAAAAAGCCCCCGAGGANAGAANCACACCGCAG 972
consensus_6943#1 AGTCGTTACTGCAGGTCAAGAGATTTATAAA--TCCCATTATGTGTTAGGCTTAGTATTG 962
* ** ** * * * *** *** * * * * * *
consensus_6943#0 ACACGGA-ATCATGGCCGNACAAAAATCGNGACGTTACAGCACTGGCGAACCCGCGGAGG 1031
consensus_6943#1 AACCAGACGTCATTATCTCTCTCCTTTTACCTCTGTGTTACCCTGAATAAACTGTTTTTG 1022
* * ** **** * * * * * * *** ** * * *
consensus_6943#0 GCGGAAGCATNCACACATTCGGGCCNAACATCNGGCACNAGNGCACAAACCGCNGAGTCC 1091
consensus_6943#1 T----------------------------------------------------------- 1023
consensus_6943#0 GGCCCACACNTACGCCAACCGCGCCACCACCCAGACGGAAAGACCCCGGCAACACACAAG 1151
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 ACTNGACGCGACACAGACCCACNAAGCGACNGTGGCGGCAACAATGAGACANGCCGAATA 1211
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 CACGCCGGNGCCCAAATCCCGGGATAAAACAANCAGACGTCACCAAGGGGCCGAANAAGC 1271
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 ACCACAANCTCACACCAGGGNAGCTACAGGAGTNACCCAAANGCACCAGACCACCCAACA 1331
consensus_6943#1 ------------------------------------------------------------
consensus_6943#0 GGGCNAGCCCCCACCTAACACACATCACAANCGACANC 1369
consensus_6943#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||