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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1319 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGTGATGATGATAATGACGATGATGATGGGACGTGTTATGTCCATTTATTTATAGTGTTCACGGAAAGGAAAAGGGCGGAGATAAGATGATAATGACGATTATACTCAAACGCTCCATCCTCCCCACCCCCTCCCCACGATTTAGCAGCTCTCTCCACACCCTCTCGATCCTCTCCTCCCCTCCCATATACCCCAACTCGATGCCACTTTTCCCACGATCTCGTATCCTCCGAAGAGGGTTCAGGAGAAGCTGACTGCTGGGCGAAGGGAAGAGAAA-GAGAGAGAGAGGTGTGCCGTATTAGGAAGGGGGAGGCGGGGAGGTGGTTAGGATTTAGGCAGGAAATGGGTTGCGCGGATAAATTGCGCCCCAATTGCATTTTAACATGGATAGAATCTAAGTTTTTCTCCAACCACAAACACAAACACACCGATAG--ACACACACATACACACTCGTAATTATTCTCTGATTGGAGTTATTTTTTAAACAGAACAAGCGCAATAGTTGGCGAATGGGGGGAGCGGAAGGAGAGGAAGAAAGTAGGCAGCAAAAATACACACATATATAGAAAGAGAGAGAGAAAGAGAGTATTTGCGTGGAAAGCGCGCGAGCGACGACAACAAAAAAACACATTATATATATTATATATACTCATGCCACGAATCTCTGACGAATGAGTCGGGGTCAGGTGCAGTCTCACACACGCAAGTAAGAAACGGAAAGACGAATTATTAGTCAGAATTAGGTACGAGAGAGAGAGAGAGAAAAAAAGTTAATGCGAAAACAAAGCATAACAAAACAAAACAAACAAGAAGTAAGAAGTAACAAAACAGTGATAAGCTAATAGAATTCAAACAGAAACACAAAACAAAAAACGAAGTAACAAAAAAAGAAGAAGAAAAAGAAGAAATACTTGGCAGAAAGACAAGAGAAAATGTGACTGATTGAAATAATATACAAAAGGAAGAGGAAGGCGACAACACAGAAAGCAGCAGAAAGAGAGAGAGAAAGAGAGGGAAGATCGTGCGTAAGAGTTGTGTGAAGAGTGAAGAGAGGGTAGTAAGGGTAGTTTACCCGTTGCCTAGAAGGAGAGATGAGGAGGCCATGCACACCACGAACGCGCGGGGCTGCGGAACAAGCCCCGACGGACTCTGTACTCCCTCACCCCATAGCGGAGGGAGGGAGTTGGTGCGTGCGTTCGTGAGTGCGTGATGGGTAGCGAAACAAAAAGTACCCAGTGTGTAAATAAAAACAATTCCGTTTGATGATGAATATGACAGTGATACATAACCCTGA]
[+] EMBL BM598334 [CCGCGGACGCGTGGGCGGACGCGTGGGTGATGATGATAATGACGATGATGATGGGACGTGTTATGTCCATTTATTTATAGTGTTCACGGAAAGGAAAAGGGCGGAGATAAGATGATAATGACGATTATACTCAAACGCTCCATCCTCCCCACCCCCTCCCCACGATTTAGCAGCTCTCTCCACACCCTCTCGATCCTCTCCTCCCCTCCCATATACCCCAACTCGATGCCACTTTTCCCACGATCTCGTATCCTCCGAAGAGGGTTCAGGAGAAGCTGACTGCTGGGCGAAGGGAAGAGAAA GAGAGAGAGAGGTGTGTCGTATTAGGAAGGGGGAGGCGGGGAGGTGGTTAGGATTTAGGCAGGAAATGGGTTGCGCGGATAAATTGCGCCCCAATTGCATTTTAACATGGATAGAATCTAAGTTTTTCTCCAACCACAAACACAAACACACCGATAG ACACACACATACACACTCGTAATTATTCTCTGATTGGAGTTATTTTTTAAACAGAACAAGCGCAATAGTTGGCGAATGGGGGGAGCGGAAGGAGAGGAAGAAAGTAGGCAGCAAAAATACACACATATATAGA ]
[+] EMBL BM611121 [ ccgGATAAGATGATAATGACGATTATACTCAAACGCTCCATCCTCCCCACCCCCTCCCCACGATTTAGCAGCTCTCTCCACACCCTCTCGATCCTCTCCTCCCCTCCCATATACCCCAACTCGATGCCACTTTTCCCACGATCTCGTATCCTCCGAAGAGGGTTCAGGAGAAGCTGACTGCTGGGTGAAGGGGAGAGAAAGGGGAGAGAGAGGTGTGCCGTATTAGGAAGGGGGAGGCGGGGAGGTGGTTAGGATTTAGGCAGGAAATGGGTTGCGCGGATAAATTGCGCCCCAATTGCATTTTAACATGGATAGAATCTAAGTTTTTCTCCAACCA ACACACAAACACACCGATAG ACACACACATACACACTCGTAATTATTCTCTGATTGGAGTTATTTTTTAAACAGAACAAGCGCAATAGTTGGCGAATGGGGGGAGCGGAAGAAGAGGAAGAAAGTAGGCAGCAAAAATACACACATATATAGAAAGAGAGAGAGAAAGAGAGTATTTGCGTGGAAAGCGCGCGAGCGTCGGCAACAAAAAAACACATTATATATATTATATATACTCATGCCACGAATCTCTGACGAATGAGTCGGGGTCAGGTGCAGTCTCACACACGCAAGTAAGAAACGGAAAGACGAATTA ]
[+] EMBL BX616365 [ TACCCCAACTCGATGCCACTTTTCCCACGATCTCGTATCCTCCGAAGAGGGTTCAGGAGAAGCTGACTGCTGGGCGAAGGGAAGAGAAA GAGAGAGAGAGGTGTGCCGTATTAGGAAGGGGGAGGCGGGGAGGTGGTTAGGATTTAGGCAGGAAATGGGTTGCGCGGATAAATTGCGCCCCAATTGCATTTTAACACGGATAGAATCTAAGTTTTTCTCCAACCACAAACACAAACACACCGATAGACACACACACATACACACTCGTAATTATTCTCTGATTGGAGTTATTTTTTAAACAGAACAAGCGCAATAGTTGGCGAATGGGGGGAGCGGAAGGAGAGGAAGAAAGTAGGCAGCAAAAATACACACATATATAGAAAGAGAGAGAGAAAGAGAGTATTTGCGTGGAAAGCGCGCGAGCGACGACAACAAAAAAACACATTATATATATTATATATACTCATGCCACGAATCTCTGACGAATGAGTCGGGGTCAGGTGCAGTCTCACACACGCAAGTAAGAAACGGAAAGACGAATTATTAGTCAGAATTAGGTACGAGAGAGAGAGAGAGAAAAAAAGTTAATGCGAAAACAAAGCATAACAAAACAAAACAAACAAGAAGTAAGAAGTAACAAAACAGTGATAAGCTAATAGAATTCAAACAGA ]
[+] EMBL BX628425 [ AAGTAGGCAGCAAAAATACACACATATATAGAAAGAGAGACAG ATGAGAGTATTTGCGTGGAAAGCGCGCGAGCGACGACAACAAAAAAACACATTATATATATTATATATACTCATGCCACGAATCTCTGACGAATGAGTCGGGGTCAGGTGCAGTCTCACACACGCAAGTAAGAAACGGAAAGACGAATTATTAGTCAGAATTAGGTACGAGAGAGAGAGAGAGAAAAAAAGTTAATGCGAAAACAAAGCAAAACAAAACAAAACAAACAAGAAGTAAGAAGTAACAAAACAGTGATAAGCTAATAGAATTCAAACAGAAACACAAAACAAAAAACGAAGTAACAAAAAAAGAAGAAGAAAAAGAAGAAATACTTGGCAGAAAGACAAGAGAAAATGTGACTGATTGAAATAATATACAAAAGGAAGAGGAAGGCGACAACACAGAAAGCAGCAGAAAGAGAGAGAGAAAGAGAGGGAAGATCGTGCGTAAGAGTTGTGTGAAGAGTGAAGAGAGGGTAGTAAGGGTAGTTTACCCGTTGCCTAGAAGGAGAGATGAGGAGGCCATGCACACCACGAACGCGCGGGGCTGCGGAACAAGCCCCGACGGACTCTGTACTCCCTCACCCCATAGCGGAGGGAGGGAGTTGGTGCGTGCGTTCGTGAGTGCGTGATGG ]
[-] EMBL BM599080 [ AGATCGTGCGTAAGAGTTGTGTGAAGAGTGAAGAGAGGGTAGTAAGGGTAGTTTTCCCGTTGCCTAGAAGGAGGGATGAGGAGGCCATGCCCCCCCCGAACGCGCGGGGGTGCGGAACAAGCCCCGACGGACTTTGTACTCCCTCCCCCCATAGCGGAGGGAGGGAGTTGGTGCGTGCGTTTGTGAGTGCGTGATGGGTAGCGAAACAAAAAGTACCCAGTGTGTAAATAAAAACAATTCCGTTTGATGATGAATATGACAGTGATACATAACCCTGA]
consensusID : consensus_6946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[TAGTTTAAGGACGGTCCGCCAGCGGGATAGCGGGAGGACTAATAGTAAAGGCCGCGTAACGCCACATCCCCCTTCCCATCTCGCGCCACTCCTCGCGATCGGTGGCGTGTTTTTTAGGGGAAGAAGAACAAGAAGCATTTAATAGTTTAAATAGTCACGTAACTATTTCACTCACTCTCTACTTAATCTTCGCATCGTGTGCGTCCCGATGCGATGCGATGCGTGTGTGTGTGTGCTCGCGAGCCTAGTGAAAATAGGGGAAATATTGGGGAAACGGGGAAGTAGTAGAAGCAGAGGAGGACGTAAAAAACAAAATACGGATTAGTGCATTTAACGCATTAAGTGGTGCGATTGATGATGATGATGATGACGATGATGATGGGACGTGTTATGTCCATTTATTTATAGTGTTCACGGAAAGGAAAAGGGCGGAGATAAAGATGATAATGACGATTATACTCAAACGCTCCA]
[+] EMBL BX622302 [TAGTTTAAGGACGGTCCGCCAGCGGGATAGCGGGAGGACTAATAGTAAAGGCCGCGTAACGCCACATCCCCCTTCCCATCTCGCGCCACTCCTCGCGATCGGTGGCGTGTTTTTTAGGGGAAGAAGAACAAGAAGCATTTAATAGTTTAAATAGTCACGTAACTATTTCACTCACTCTCTACTTAATCTTCGCATCGTGTGCGTCCCGATGCGATGCGATGCGTGTGTGTGTGTGCTCGCGAGCCTAGTGAAAATAGGGGAAATATTGGGGAAACGGGGAAGTAGTAGAAGCAGAGGAGGACGTAAAAAACAAAATACGGATTAGTGCATTTAACGCATTAAGTGGTGCGATTGATGATGATGATGATGACGATGATGATGGGACGTGTTATGTCCATTTATTTATAGTGTTCACGGAAAGGAAAAGGGCGGAGATAAAGATGATAATGACGATTATACTCAAACGCTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6946#0 CCGCGGACGCGTGGGCGGACGCGTGGGTGATGATGATAATGACGATGATGATGGGACGTG 60
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 TTATGTCCATTTATTTATAGTGTTCACGGAAAGGAAAAGGGCGGAGATAAGATGATAATG 120
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 ACGATTATACTCAAACGCTCCATCCTCCCCACCCCCTCCCCACGATTTAGCAGCTCTCTC 180
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 CACACCCTCTCGATCCTCTCCTCCCCTCCCATATACCCCAACTCGATGCCACTTTTCCCA 240
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 CGATCTCGTATCCTCCGAAGAGGGTTCAGGAGAAGCTGACTGCTGGGCGAAGGGAAGAGA 300
consensus_6946#1 --------------------TAGTTTAAGGACGGTCCGCCAGCGGGATAGCGGGAGGACT 40
* ** **** * * * ** ** **** **
consensus_6946#0 AAGAGAGAGAGAGGTGT---GCCGTATTAGGAAGGGGGAGGCGGGGAGGTGGTTAGGATT 357
consensus_6946#1 AATAGTAAAGGCCGCGTAACGCCACATCCCCCTTCCCATCTCGCGCCACTCCTCGCGATC 100
** ** * * * ** *** ** ** * * * ***
consensus_6946#0 TAGGCAGGAAATGGGTTGCGCGGATAAATTGCGCCCCAATTGCATTTTAACATGGATAGA 417
consensus_6946#1 --GGTGGCGTGTTTTTTAGGGGAAGAA---GAACAAGAAGCATTTAATAGTTTAAATAGT 155
** * * ** * * * ** * * ** * ** * ****
consensus_6946#0 -ATCTAAGTTTTTCTCCAACCACAAACACAAACACACCGATAGACACACACATACACACT 476
consensus_6946#1 CACGTAACTATTTCACTCACTCTCTACTTAATCTTCGCATCGTGTGCGTCCCGATGCGAT 215
* *** * **** * ** ** ** * * * * * * *
consensus_6946#0 CGTAATTATTCTCTGATTGGAGTTATTTTTTAAACAGAACAAGCGCAATAGTTGGCGAAT 536
consensus_6946#1 -GCGATGCGTGTGTGTGTGTGCTCGCGAGCCTAGTGAAAATAGGGGAAATATTGGGGAAA 274
* ** * * ** ** * * ** ** * ** **** ***
consensus_6946#0 GGGGGGAGCGGAAGGAGAGGAAGAAAGTAGGCAGCAAAAATACACACATATATAGAAAGA 596
consensus_6946#1 CGGGGAAGTAGTAGAAGCAGAGGAGGACGTAAAAAACAAA-ATACGGATTAGTGCATTTA 333
**** ** * ** ** ** ** * * *** * ** ** * * *
consensus_6946#0 GAGAGAGAAAGAGAGTATTTGCGTGGAAAGCGCGCGAGCGACGACAACAAAAAAACACAT 656
consensus_6946#1 ACGCATTAAGTGGTGCGATTG-ATGATGATGATG---ATGACGATGATGATGGGACGTGT 389
* ** * * *** ** * * ***** * * ** *
consensus_6946#0 TATATATATTATATATACTCATGCCACGAATCTCTGACGAATGAGTCGGGGTCAGGTGCA 716
consensus_6946#1 TATGTCCATT-TATTTATAGTGTTCACGGA-----AAGGAAAAGGGCGGAGATAAAGATG 443
*** * *** *** ** **** * * *** * *** * *
consensus_6946#0 GTCTCACACACGCAAGTAAGAAACGGAAAGACGAATTATTAGTCAGAATTAGGTACGAGA 776
consensus_6946#1 ATAATGACGATTATACTCAAACGCTCCA-------------------------------- 471
* * * * * * * *
consensus_6946#0 GAGAGAGAGAGAAAAAAAGTTAATGCGAAAACAAAGCATAACAAAACAAAACAAACAAGA 836
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 AGTAAGAAGTAACAAAACAGTGATAAGCTAATAGAATTCAAACAGAAACACAAAACAAAA 896
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 AACGAAGTAACAAAAAAAGAAGAAGAAAAAGAAGAAATACTTGGCAGAAAGACAAGAGAA 956
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 AATGTGACTGATTGAAATAATATACAAAAGGAAGAGGAAGGCGACAACACAGAAAGCAGC 1016
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 AGAAAGAGAGAGAGAAAGAGAGGGAAGATCGTGCGTAAGAGTTGTGTGAAGAGTGAAGAG 1076
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 AGGGTAGTAAGGGTAGTTTACCCGTTGCCTAGAAGGAGAGATGAGGAGGCCATGCACACC 1136
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 ACGAACGCGCGGGGCTGCGGAACAAGCCCCGACGGACTCTGTACTCCCTCACCCCATAGC 1196
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 GGAGGGAGGGAGTTGGTGCGTGCGTTCGTGAGTGCGTGATGGGTAGCGAAACAAAAAGTA 1256
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 CCCAGTGTGTAAATAAAAACAATTCCGTTTGATGATGAATATGACAGTGATACATAACCC 1316
consensus_6946#1 ------------------------------------------------------------
consensus_6946#0 TGA 1319
consensus_6946#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||