cluster # 6950

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6950 cluster # 6950 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6950#0 length = 1410 sequences # 4

consensus_6950#1 length = 227 sequences # 1
consensus_6950#2 length = 48 sequences # 1

consensusID : consensus_6950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1410
fasta sequence

                              [CCGCCCACGCGTCCGAAAAAAGGGCGGCCGTCCAGTGCCGGCAGCAAGGCAAAGCGCTACTTCTGGCAGTACAATGTGCAGGCGAAGGGACCGAAGGGGCAGCGTTTGGTCATCAAAACGCAGGTGGAGGATCCGCACGTGCTGAACGCGGTCACCGATCCCGTATTCAGTCCGAACTGCTCCGTTCGAGGCATTAAGAATCTTCGTTTACAGCACAGCGGCAAGGCGCGGAAGGGTGACGGCAACGATCTGACGCCGAATCCTCGCAAGCTGCACAACATCGGCAAGGAGCTGGACAAGCTCGGCCGCGTCATCAACGACATGAAGCCCGTTAGCGAGCTGCCGTTCAATGCGCGCCCGAAGACGCGCAAGGAAAAGAACAAGCTGGCGTCGCGGGCCTGCCGGCTGAAGAAGAAGGCACAGCACGAAGCGAACAAGATCAAGCTGTACGGGCTGGAGACGGAACACAAGCGTCTCATGAACGGAATATTGCATCTGAAACAGATCCTGGTGACGAAGTGCAGCAATGCGGGAACGGCCAGTGAGAACCCAGAAGAGTACAAACAGCAACTAGACACGTTGGTGCAAACGTCATCCAAAATAAAAATTGCTGGCAATTCTACTGAGTTTGTGAACAAAATGCTCGAGAATGTGCGGACGGGTAACAACACCAGCATAGATACGGTGCTGGAGCACTTCTAGATCGGTCCGGAAGCTTCCTGTTGTGTTGTGCGCTTGTTATGAACGATACAGCAACGTGTGTGTGCGT-GCGAGCAGGAGGAGGAGGAGTCGCGAAGTCGAATGGTGATGGTTTTGCGCGTCATTTTCTCTCCACTCTGGAGGGAAAGTCGAACCAGCACCAAATCACCAATGACGAATCAATGAGACTGTAAGATAAAAAAAAAAGAAAGCAACCAATTACCTTCGTTTTGTTTAAAACTACATAATATTTTCTAATGAGCGTGCATTGTATGAATAATGCATAAAACGGCACATGATGCACATAGTGCGGCGGGGAATAAGTGATATTTGCCATTGCGCTGTTGGCAGACGCCGGCAGCAGTGGTGCAAAAGCAATCACTCCGGATGGCGCAGTGAATGAGAAATTACTACCACCTAAGAGAAGATCGTTGCCGACGAAGGAGAAGCATTTGTACGGGGAGTGCAATTTCCATGCAAAGTGCAATCCAGAACACGTGACAGAGCGAGATAGAAGAGCAAGAGGGAGAGAGAGATAAAGCGAGGGAGGAATGCTGAAACATATGTTGGTCATTATATGATATTTGAACAAGCATTAGCGAGTAAGAACACATTTCTTTACATGCATATACATATACGTAGATACACTGTAAGGTACCGGATAAGGATTATTCAAACCTGTTTTTGTTTGTCAGTACAACTTGTTACATT]

[+] EMBL BM593501             [CCGCCCACGCGTCCGAAAAAAGGGCGGCCGTCCAGTGCCGGCAGCAAGGCAAAGCGCTACTTCTGGCAGTACAATGTGCAGGCGAAGGGACCGAAGGGGCAGCGTTTGGTCATCAAAACGCAGGTGGAGGATCCGCACGTGCTGAACGCGGTCACCGATCCCGTATTCAGTCCGAACTGCTCCGTTCGAGGCATTAAGAATCTTCGTTTACAGCACAGCGGCAAGGCGCGGAAGGGTGACGGCAACGATCTGACGCCGAATCCTCGCAAGCTGCACAACATCGGCAAGGAGCTGGACAAGCTCGGCCGCGTCATCAACGACATGAAGCCCGTTAGCGAGCTGCCGTTCAATGCGCGCCCGAAGACGCGCAAGGAAAAGAACAAGCTGGCGTCGCGGGCCTGCCGGCTGAAGAAGAAGGCACAGCACGAAGCGAACAAGATCAAGCTGTACGGGCTGGAGACGGAACACAAGCGTCTCATGAACGGAATATTGCATCTGAAACAGATCCTGGTGACGAAGTGCAGCAATGCGGGAACGGCCAGTGAGAACCCAGAAGAGTACAAACAGCAACTAGACACGTTGGTGCAAACGTCATCCAAAATAAAAATTGCTGGCAATTCTACTGAGTTTGTGAACAAAATGCTCGAGAATGTGCGGACGGGTAACAACACCAGCATAGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM579404             [                                                                                                                                                                                                                                                                                                                                                                                                                                       ccgGAAGCGAACAAGATCAAGCTGTACGGGCTGGAGACGGAACACAAGCGTCTCATGAACGGAATATTGCATCTGAAACAGATCCTGGTGACGAAGTGCAGCAATGCGGGAACGGCCAGTGAGAACCCAGAAGAGTACAAACAGCAACTAGACACGTTGGTGCAAACGTCATCCAAAATAAAAATTGCTGGCAATTCTACTGAGTTTGTGAACAAAATGCTCGAGAATGTGCGGACGGGTAACAACACCAGCATAGATACGGTGCTGGAGCACTTCTAGATCGGTCCGGAAGCTTCCTGTTGTGTTGTGCGCTTGTTATGAACGATACACCAACGTCTGTGTGCGT GCGTGCAGGAGGAGGAGGAGTCGCGAAGTCGAATGGTGATGGTTTTGCGCGTCATTTTCTCTCCACTCTGGAGGGAAAGTCGAACCAGCACCAAATCACCAATGACGAATCAATGAGACTGTAAGATAAAAAAAAAAGAAAGCAACCAATTACCTTCGTTTTGTTTAAAACTACATAATATTTTCTAATGAGCGTGCATTGTATGAATAATGCATAAAACGGCACATGATGCACATAGTGCGGCGGGGAATAAGTGATATTTGCCATTGCGCTGTTGGCAGACGCCGGCAGCAGTGGTGCAAAA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM633329             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ccgGTTGGTGCAAACGTCATCCAAAATAAAAATTGCTGGCAATTCTACTGAGTTTGTGAACAAAATGCTCGAGAATGTGCGGACGGGTAACAACACCAGCATAGATACGGTGCTGGAGCACTTCTAGATCGGTCCCGAAGCTTCCTGTTGTGTTGTGCGCTTGTTATGAACGATACAGCAACATGTGTGTGCGT GCAAGCAGGAGGAGGAGGAGTCGCTAAGTCGAATGGTGATGGTTTTGCGCGTCATTTTCTCTCCACTCTGGAGGGAAAGTCGAACCAGCACCAAATCACCAATGACGAATCAATGAGACTGTAAGATAAAAAAAAAAGAAAGCAACCAATTACCTTCGTTTTGTTTAAAACTACATAATATTTTCTAATGACCGTGCATTGTATGTATAATGCATAAAACGGCACATGATGCACATAGTGCGGCGGGGAATAAGTGATATTTGCCATTGCGCTGTTGGCAGACGCCGGCAGCAGTGGTGCAAAAGCAATCACTCCGGATGGCGCAGTGAATGAGAAATTACTACCACCTAAGAGAAGATCGTTGCCGACGAAGGAGAAGCATTTGTACGGGGAGTGCAATTTCCATGCAAAGTGCAATCCAGAACACGTGACAGAGCGAGATAGAAGAGCAAGAGGGAGAGAGAGATAAAGCGAGGG                                                                                                                                                                    ]
[+] EMBL BX621221             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTGCTGGAGCACTTCTAGATCGGTCCGGAAGCTTCCTGTTGTGTTGTTCGCTTGTTATGAACGATACAGCAACGTGTGTGTGCGTACCGAG AGGAGGAGGAGGAGTCGCGAAGTCGAATGGTGATGGTTTTGCGCGTCATTTTCTCTCCACTCTGGAGGGAAAGTCGAACCAGCACCAAATCACCAATGACGAATCAATGAGACTGTAAGAT  AAAAAAAAGAAAGCAACCAATTACCTTCGTTTTGTTTAAAACTACATAATATTTTCTAATGAGCGTGCATTGTATGAATAATGCATAAAACGGCACATGATGCACATAGTGCGGCGAGGAATAAGTGATATTTGCCATTGCGCTGTTGGCAGACGCCGGCAGCAGTGGTGCAAAAGCAATCACTCCGGATGACGCAGTGAATGAGAAATTACTACCACCTAAGAGAAGATCGTTGCCGACGAAGGAGAAGCATTTGTACGGGGAGTGCACTTTCCATGCAAAGTGCAATCCAGAACACGTGACAGAGCGAGATAGAAGAGCAAGAGGGAGAGAGAGATAAAGCGAGGGAGGAATGCTGAAACATATGTTGGTCATTATATGATATTTGAACAAGCATTAGCGAGTAAGAACACATTTCTTTACATGCATATACATATACGTAGATACACTGTAAGGTACCGGATAAGGATTATTCAAACCTGTTTTTGTTTGTCAGTACAACTTGTTACATT]




>consensus_6950#0
CCGCCCACGCGTCCGAAAAAAGGGCGGCCGTCCAGTGCCGGCAGCAAGGCAAAGCGCTAC
TTCTGGCAGTACAATGTGCAGGCGAAGGGACCGAAGGGGCAGCGTTTGGTCATCAAAACG
CAGGTGGAGGATCCGCACGTGCTGAACGCGGTCACCGATCCCGTATTCAGTCCGAACTGC
TCCGTTCGAGGCATTAAGAATCTTCGTTTACAGCACAGCGGCAAGGCGCGGAAGGGTGAC
GGCAACGATCTGACGCCGAATCCTCGCAAGCTGCACAACATCGGCAAGGAGCTGGACAAG
CTCGGCCGCGTCATCAACGACATGAAGCCCGTTAGCGAGCTGCCGTTCAATGCGCGCCCG
AAGACGCGCAAGGAAAAGAACAAGCTGGCGTCGCGGGCCTGCCGGCTGAAGAAGAAGGCA
CAGCACGAAGCGAACAAGATCAAGCTGTACGGGCTGGAGACGGAACACAAGCGTCTCATG
AACGGAATATTGCATCTGAAACAGATCCTGGTGACGAAGTGCAGCAATGCGGGAACGGCC
AGTGAGAACCCAGAAGAGTACAAACAGCAACTAGACACGTTGGTGCAAACGTCATCCAAA
ATAAAAATTGCTGGCAATTCTACTGAGTTTGTGAACAAAATGCTCGAGAATGTGCGGACG
GGTAACAACACCAGCATAGATACGGTGCTGGAGCACTTCTAGATCGGTCCGGAAGCTTCC
TGTTGTGTTGTGCGCTTGTTATGAACGATACAGCAACGTGTGTGTGCGTGCGAGCAGGAG
GAGGAGGAGTCGCGAAGTCGAATGGTGATGGTTTTGCGCGTCATTTTCTCTCCACTCTGG
AGGGAAAGTCGAACCAGCACCAAATCACCAATGACGAATCAATGAGACTGTAAGATAAAA
AAAAAAGAAAGCAACCAATTACCTTCGTTTTGTTTAAAACTACATAATATTTTCTAATGA
GCGTGCATTGTATGAATAATGCATAAAACGGCACATGATGCACATAGTGCGGCGGGGAAT
AAGTGATATTTGCCATTGCGCTGTTGGCAGACGCCGGCAGCAGTGGTGCAAAAGCAATCA
CTCCGGATGGCGCAGTGAATGAGAAATTACTACCACCTAAGAGAAGATCGTTGCCGACGA
AGGAGAAGCATTTGTACGGGGAGTGCAATTTCCATGCAAAGTGCAATCCAGAACACGTGA
CAGAGCGAGATAGAAGAGCAAGAGGGAGAGAGAGATAAAGCGAGGGAGGAATGCTGAAAC
ATATGTTGGTCATTATATGATATTTGAACAAGCATTAGCGAGTAAGAACACATTTCTTTA
CATGCATATACATATACGTAGATACACTGTAAGGTACCGGATAAGGATTATTCAAACCTG
TTTTTGTTTGTCAGTACAACTTGTTACATT

consensusID : consensus_6950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence

                              [CCGCGGACGCGTGGGCGACGAAGGAGAAGCATTTGTACGGGGAGTGCACTTTCCATGCAAAGTGCAATCCAGAACACGTGACAGAGCGAGATAGAAGAGCAAGAGAGAGAGAGAGAGAGTGAATGATGATGATGACGAAGGTTGACGATCGCAATCGTGCGACGAATGTATGCGAAATGGTTTGTAACGTTCGCTGCTTAAGCCGACAATAAACTCTCTATTACTTT]

[+] EMBL BM615994             [CCGCGGACGCGTGGGCGACGAAGGAGAAGCATTTGTACGGGGAGTGCACTTTCCATGCAAAGTGCAATCCAGAACACGTGACAGAGCGAGATAGAAGAGCAAGAGAGAGAGAGAGAGAGTGAATGATGATGATGACGAAGGTTGACGATCGCAATCGTGCGACGAATGTATGCGAAATGGTTTGTAACGTTCGCTGCTTAAGCCGACAATAAACTCTCTATTACTTT]




>consensus_6950#1
CCGCGGACGCGTGGGCGACGAAGGAGAAGCATTTGTACGGGGAGTGCACTTTCCATGCAA
AGTGCAATCCAGAACACGTGACAGAGCGAGATAGAAGAGCAAGAGAGAGAGAGAGAGAGT
GAATGATGATGATGACGAAGGTTGACGATCGCAATCGTGCGACGAATGTATGCGAAATGG
TTTGTAACGTTCGCTGCTTAAGCCGACAATAAACTCTCTATTACTTT

consensusID : consensus_6950#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 48
fasta sequence

                              [GATCTGCAGGAGGAGGAGTCGCGAAGTCGAATGTGATGGTTTTGCGCG]

[+] EMBL AL697254             [GATCTGCAGGAGGAGGAGTCGCGAAGTCGAATGTGATGGTTTTGCGCG]




>consensus_6950#2
GATCTGCAGGAGGAGGAGTCGCGAAGTCGAATGTGATGGTTTTGCGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6950#0      CCGCCCACGCGTCCGAAAAAAGGGCGGCCGTCCAGTGCCGGCAGCAAGGCAAAGCGCTAC 60
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      TTCTGGCAGTACAATGTGCAGGCGAAGGGACCGAAGGGGCAGCGTTTGGTCATCAAAACG 120
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      CAGGTGGAGGATCCGCACGTGCTGAACGCGGTCACCGATCCCGTATTCAGTCCGAACTGC 180
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      TCCGTTCGAGGCATTAAGAATCTTCGTTTACAGCACAGCGGCAAGGCGCGGAAGGGTGAC 240
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      GGCAACGATCTGACGCCGAATCCTCGCAAGCTGCACAACATCGGCAAGGAGCTGGACAAG 300
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      CTCGGCCGCGTCATCAACGACATGAAGCCCGTTAGCGAGCTGCCGTTCAATGCGCGCCCG 360
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      AAGACGCGCAAGGAAAAGAACAAGCTGGCGTCGCGGGCCTGCCGGCTGAAGAAGAAGGCA 420
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      CAGCACGAAGCGAACAAGATCAAGCTGTACGGGCTGGAGACGGAACACAAGCGTCTCATG 480
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      AACGGAATATTGCATCTGAAACAGATCCTGGTGACGAAGTGCAGCAATGCGGGAACGGCC 540
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      AGTGAGAACCCAGAAGAGTACAAACAGCAACTAGACACGTTGGTGCAAACGTCATCCAAA 600
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      ATAAAAATTGCTGGCAATTCTACTGAGTTTGTGAACAAAATGCTCGAGAATGTGCGGACG 660
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      -----------------------------------------------CCGCGGACGCGTG 13
                                                                                  

consensus_6950#0      GGTAACAACACCAGCATAGATACGGTGCTGGAGCACTTCTAGATCGGTCCGGAAGCTTCC 720
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      GGCGACGAAGGAGAAGCATTTGTACGGGGAGTGCACTTTCCATGCAAAGTGCAATCCAGA 73
                                                                                  

consensus_6950#0      TGTTGTGTTGTGCGCTTGTTATGAACGATACAGCAACGTGTGTGTGCGTGCGAGCAGGAG 780
consensus_6950#2      ---------------------------------------------------GATCTGCAG 9
consensus_6950#1      ACACGTGACAGAGCGAGATAGAAGAGCAAGAGAGAGAGAGAGAGAGTGAATGATGATGAT 133
                                                                         **     * 

consensus_6950#0      GAGGAGGAGTCGCGAAGTCGAATGG-TGATGGTTTTGCGCGTCATTTTCTCTCCACTCTG 839
consensus_6950#2      GAGGAGGAGTCGCGAAGTCGAATG--TGATGGTTTTGCGCG------------------- 48
consensus_6950#1      GACGAAGGTTGACGATCGCAATCGTGCGACGAATGTATGCGAAATGGTTTGTAACGTTCG 193
                      ** ** *  *  ***   * *  *   ** *  * *  ***                   

consensus_6950#0      GAGGGAAAGTCGAACCAGCACCAAATCACCAATGACGAATCAATGAGACTGTAAGATAAA 899
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      CTGCTTAAGCCGACAATAAACTCTCTATTACTTT-------------------------- 227
                                                                                  

consensus_6950#0      AAAAAAAGAAAGCAACCAATTACCTTCGTTTTGTTTAAAACTACATAATATTTTCTAATG 959
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      AGCGTGCATTGTATGAATAATGCATAAAACGGCACATGATGCACATAGTGCGGCGGGGAA 1019
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      TAAGTGATATTTGCCATTGCGCTGTTGGCAGACGCCGGCAGCAGTGGTGCAAAAGCAATC 1079
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      ACTCCGGATGGCGCAGTGAATGAGAAATTACTACCACCTAAGAGAAGATCGTTGCCGACG 1139
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      AAGGAGAAGCATTTGTACGGGGAGTGCAATTTCCATGCAAAGTGCAATCCAGAACACGTG 1199
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      ACAGAGCGAGATAGAAGAGCAAGAGGGAGAGAGAGATAAAGCGAGGGAGGAATGCTGAAA 1259
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      CATATGTTGGTCATTATATGATATTTGAACAAGCATTAGCGAGTAAGAACACATTTCTTT 1319
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      ACATGCATATACATATACGTAGATACACTGTAAGGTACCGGATAAGGATTATTCAAACCT 1379
consensus_6950#2      ------------------------------------------------------------
consensus_6950#1      ------------------------------------------------------------
                                                                                  

consensus_6950#0      GTTTTTGTTTGTCAGTACAACTTGTTACATT 1410
consensus_6950#2      -------------------------------
consensus_6950#1      -------------------------------