These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1036 fasta sequence [CTCATGCCANATTGCCCAGGTTTTTGTCTGGACACAACATGACGCGGACNGATAGTNATCGCTAGACGCAGACACAAATGCTGCTCACAAGGTGTGGTACATCCTGCACCGCATACCACACCGTATACGCAGCGATAGGCGGCTGCTGTATTACCAGCCTGGCAGTGAAACCCTGCAACCGATGGTTACATACAAACAGACCAGCGCACAGAACCCTTACACTGATAGCTGCCCCTGCTGGAGCGTAACGATTTGTGCGCGTACNAGGATCCTGACGACGGTCAGNTATTACTGAGTGGNACTTGATTGACAGAAACGCATCATTGCTAGCNACCTACAGAGACACAAGCAAGCNACGGTGTTAACTGCGACATGTATTACTCCAAAGTGCGGANATAGGGGCGCTGTATANTACATGGTTGCATNNCACAAATCATACTAACCACAGCGAGNCCCGGTGGGCTTGGGAACACCCGGNGGCCCGGANGCTAAAATATATCTGGCATACCGANAGAGTTGCCGCAATTNGCNGATGGNCACCGGTGTNGGACAGGCCCCNGACAGTGGACACTTNCAGAANGGAACAGAACGCACACCTTNATTNGGAACCAGCCTATGTTAACCCGGAGACTTTGNCTCCAATACAGGCAAATGTGGGTAGGCGAAGCAGGTTACGAGGAAAGGCCAAGAGAAGCGGCAGNNCAAACCCCGACTAAAACCAAGGNGAGACAANTGGAATTGCGAGAGAGCCCCCGAAACACNTNTTACCAACACGCGANACAGAGGCACCCGATCTGGCACAAACGATGANAATGGGCAACAAGCAATGGAGGAAGAATTTAAGGNCACATGGAGGGATTATGGNACANCAGNACAGACGAGATACAACTACCCGAGCCCCTTTGGGNTACACACCCGGNNGGCNAGAGNGAGTATCCNCACGGNGTCAGACACTAGCAACCAGGTTTAAGATTAATAGCCNACAACAAGGGAACTTTTCCCCCTTACCAGCTNGCAACATTATGCCANCCAACAG] [+] EMBL AL693666 [CTCATGCCANATTGCCCAGGTTTTTGTCTGGACACAACATGACGCGGACNGATAGTNATCGCTAGACGCAGACACAAATGCTGCTCACAAGGTGTGGTACATCCTGCACCGCATACCACACCGTATACGCAGCGATAGGCGGCTGCTGTATTACCAGCCTGGCAGTGAAACCCTGCAACCGATGGTTACATACAAACAGACCAGCGCACAGAACCCTTACACTGATAGCTGCCCCTGCTGGAGCGTAACGATTTGTGCGCGTACNAGGATCCTGACGACGGTCAGNTATTACTGAGTGGNACTTGATTGACAGAAACGCATCATTGCTAGCNACCTACAGAGACACAAGCAAGCNACGGTGTTAACTGCGACATGTATTACTCCAAAGTGCGGANATAGGGGCGCTGTATANTACATGGTTGCATNNCACAAATCATACTAACCACAGCGAGNCCCGGTGGGCTTGGGAACACCCGGNGGCCCGGANGCTAAAATATATCTGGCATACCGANAGAGTTGCCGCAATTNGCNGATGGNCACCGGTGTNGGACAGGCCCCNGACAGTGGACACTTNCAGAANGGAACAGAACGCACACCTTNATTNGGAACCAGCCTATGTTAACCCGGAGACTTTGNCTCCAATACAGGCAAATGTGGGTAGGCGAAGCAGGTTACGAGGAAAGGCCAAGAGAAGCGGCAGNNCAAACCCCGACTAAAACCAAGGNGAGACAANTGGAATTGCGAGAGAGCCCCCGAAACACNTNTTACCAACACGCGANACAGAGGCACCCGATCTGGCACAAACGATGANAATGGGCAACAAGCAATGGAGGAAGAATTTAAGGNCACATGGAGGGATTATGGNACANCAGNACAGACGAGATACAACTACCCGAGCCCCTTTGGGNTACACACCCGGNNGGCNAGAGNGAGTATCCNCACGGNGTCAGACACTAGCAACCAGGTTTAAGATTAATAGCCNACAACAAGGGAACTTTTCCCCCTTACCAGCTNGCAACATTATGCCANCCAACAG] consensusID : consensus_6951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 839 fasta sequence [TCGCTAGGTAAGCATTTCTAAACCCCGTACCGTGCGCTGTCTTTAGCTGCGCGCACTGAAACATTCTTTCGGTAGACGCAGACACAATGCTGCTCACAAGGTGTGGTACATCCGCCACCGCCATCCACACCGTTCGCCAGCGATGGCCGGCTGCGTTTCCAGCCCTGGCAGTGAAACCCGCAACCCGATGGTTACATCAAACCAGCCCAGCGCACAGCCCCTTCACGATAGCGCCCCTGCCGGAGCGTAAGTTTGTGCGCGTACAAGGATCCGACGCGGTCAGCTTTCTGCAGGGACTGATGACGAACGATATGCGACACCTCGAGCACAGCAGCAC-GGTGTACGCAATGTTTCTCAAGGCGAATGGGCGCGTTTTCTGTGATACAATCATCTACAAGCGGCCCGGGGCTGAACCG-GCCGACTATTTGCTCGAGTGCGATGCGGCCGTTGCGCCGCGGCTCGAGAAACACTTGAAGCTGTACCGGCTGCGCAAGAAGGTGCAGGTGGAGCAGGACGCCACCTACCGGGTGTGGGCCGCCTTCAAGGAGGCCGTGCAGGAGGAAGAGGAGATGCCGGCTGCAAGCGATCTCGCCTGTCCGGAGGGTCGGTTACACGTGTTCAAAGATCCTCGACTGCCGCGGCTCGGCTATCGGGTGCTTACCGACGAGCAGGAGCCGAATGAATGCAAAACGCGACTGAAGCGTATCTTCCCGGAGGCGGAGACGGTCGCCGACTCGGCGCTACCGTACACGGCGTTCCGGTATTCGCTCGGTGTCGGCGAGGGAGAGACAAACCTGCCGGACGGTAAATGCTTCCCGCTCGAGTGTAACTGCGATCTG] [+] EMBL BX608592 [TCGCTAGGTAAGCATTTCTAAACCCCGTACCGTGCGCTGTCTTTAGCTGCGCGCACTGAAACATTCTTTCGGTAGACGCAGACACAATGCTGCTCACAAGGTGTGGTACATCCGCCACCGCCATCCACACCGTTCGCCAGCGATGGCCGGCTGCGTTTCCAGCCCTGGCAGTGAAACCCGCAACCCGATGGTTACATCAAACCAGCCCATCGCACAGCCCCTTCACGATAGCGCCCCTGCCGGAGCGTAAGTTTGTGCGCGTACAAGGATCCGACGCGGTCAGCTTTCTGCAGGGACTGATGACGAACGATATGCGACACCTCGAGCACAGCAGCAC GGTGTACGCAATGTTTCTCAAGGCGAATGGGCGCGTTTTCTGTGATACAATCATCTACAAGCGGCCCGGGGCTGAACCG GCCGACTATTTGCTCGAGTGCGATGCGGCCGTTGCGCCGCGGCTCGAGAAACACTTGAAGCTGTACCGGCTGCGCAAGAAGGTGCAGGTGGAGCAGGACGCCACCTACCGGGTGTGGGCCGCCTTCAAGGAGGCCGTGCAGGAGGAAGAGGAGATGCCGGCTGCAAGCGATCTCGCCTGTCCGGAGGGTCGGTTACACGTGTTCAAAGATCCTCGACTGCCGCGGCTCGGCTATCGGGTGCTTACCGACGAGCAGGAGCCGAATGAATGCAAAACGCGACTGAAGCGTATCTTCCCGGAGGCGGAGACGGTCGCCGACTCGGCGCTACCGTACACGGCGTTCCGGTATTCGCTCGGTGTCGGCGAGGGAGAGACAAACCTGCCGGACGGTAAATGCTTCCCGCTCGAGTGTAACTGCGATCTG] [+] EMBL CNS094OM [ gtaaTCGCTAGACGCAGACACAATGCTGCTCACAAGGTGTGGTACATCCGCCACCGCCATCCACACCGTTCGCCAGCGATGGCCGGCTGCGTTTCCAGCCCTGGCAGTG AACCCGCAACCCGATGGTTACATCAAACCAGCCCAGCGCACAGCCCCTTCACGATAGCGCCCCTGCCGGAGCGTAAGTTTGTGCGCGTACAAGGATCCGACGCGGTCAGCTTTCTGCAGGGACTGATGACGAACGATATGCGACACCTCGAGCACAGCAGCAC GGTGTACGCAATGTTTCTCAAGGCGAATGGGCGCGTTTTCTGTGATACAATCATCTACAAGCGGCCCGGGGCTGAACCGCGCCGACTATTTGCTCGAGTGCGATGCGGCCGTTGCGCCGCGGCTCGAGAAACACTTGAAGCTGTACCGG ] [+] EMBL CNS094KW [ GGTGTGGTACATCCGCCACCGCCATCCACACCGTTCGCCAGCGATGGCCGGTTGCGTTTCCAGCCCTGGCAGTGAAACCCGCAACCCGATGGTTACATCAAACCAGCCCAGCGCACAGCCCCTTCACGATAGCGCCCCTGCCGGAGCGTAAGTTTGTGCGCGTACAAGGATCCGACGCGGTCAGCTTTCTGCAGGGACTGATGACGAACGATATGCGACACCTCGAGCACAGCAGCACTGGTGTACGCAATGTTTCTCAAGGCGAATGGGCGCGTTTTCTGTGATACAATCATCTACAAGCGGCCCGGGGCTGAACCG GCCGACTATTTGCTCGAGTGCGATGCGGCCGTTGCGCCGCGGCTCGAGAAACACTTGAAGCTGTACCGGCTGCGCAAGAAGGTGCAGGTGGAGCAGGACGCCACCTACCGGGTGTGGGCCGCCTTCAAGGAGGCCGTGCAGGAGGAAGAGGAGATGCCGGCTGCAAGCGATCTCGCCTGTCCGGAGGGTCGGTTACACGTGTTCAAAGATCCTCGAC ] [+] EMBL AGA283274 [ CCGCCACCGCCATCCACACCGTTCGCCAGCGATGGCAGGCTGCGTTTCCAGCCCTGGCAGTGAAACCCGCGACCCGATGGTTACATCAAACCAGCCCAGCGCACAGCCCCTTCACGATAGCGCCCCTGCCGGAGCGTAAGTTTGTGCGCGTACAAGGATCCGACGCGGTCAGCTTTCTGCAGGGACTGATGACGAACGATATGCGACACCTCGAGCACAGCAGCAC GGTGTACGCAATGTTTCTCAAGGCGAATGGGCGCGTTTTCTGTGATACAATCATCTACAAGCGGCCCGGGGCTGAACCG GCCGACTATTTGCTCGAGTGCGATGCGGCCGTTGCGCCGCGGCTCGAGAAACACTTGAAGCTGTACCGGCTGCGCAAGAAGGTGCAGGTGGAGCAGGACGCCACCTACCGGGTGTGGGCCGCCTTCAAGGAGGCCGTGCAGGAGGAAGAGGAGATGCCGGCTGCAAGCGATCTCGCCTGTCCGGAGGGTCGGTTACACGTGTTC AAGATCCTCGACTGCCGCGGCTCGGCTATCGGGTGCTTACCGACGAGCAGGAGCCGAATGAATGCAAAACGCGACTGAAGCGTATCTTTCCGGAGGCGGAGACGGTtc ] [+] EMBL AGA283104 [ CAAACCAGCCCAGCGCACAGCCCCTTCACGATAGCGCCCCTGCCGGAGCGTAAGTTTGTGCGCGTACAAGGATCCGACGCGGTCAGCTTTCTGCAGGGACTGATGACGAACGATATGCGACACCTCGAGCACAGCAGCAC GGTGTACGCAATGTTTCTCAAGGCGAATGGGCGCGTTTTCTGTGATACA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6951#0 --CTCATGCCANATTGCCCAGGTTTTTGTCTGGACACAACATG-----ACGCGGACNGAT 53 consensus_6951#1 TCGCTAGGTAAGCATTTCTAAACCCCGTACCGTGCGCTGTCTTTAGCTGCGCGCACTGAA 60 * * * * * * * * * * * **** ** ** consensus_6951#0 AG---TNATCGCTAGACGCAGACACAAATGCTGCTCACAAGGTGTGGTACATCCTGCACC 110 consensus_6951#1 ACATTCTTTCGGTAGACGCAGACACAA-TGCTGCTCACAAGGTGTGGTACATCCGCCACC 119 * *** *************** ************************** **** consensus_6951#0 GCATACCACACCGTATACGCAGCGATAGGCGGCTGCTGTATTACCAGCC-TGGCAGTGAA 169 consensus_6951#1 GCCATCCACACCGTTCGC-CAGCGATGGCCGGCTGC---GTTTCCAGCCCTGGCAGTGAA 175 ** ********* * ******* * ******* ** ****** ********** consensus_6951#0 ACCCTGCAACCGATGGTTACATACAAACAGACCAGCGCACAGAACCCTTACACTGATAGC 229 consensus_6951#1 ACCCGCAACCCGATGGTTACATCAAACCAGCCCAGCGCACAGCCCCTTCAC---GATAGC 232 **** * ************* ** *** *********** ** * ** ****** consensus_6951#0 TGCCCCTGCTGGAGCGTAACGATTTGTGCGCGTACNAGGATCCTGACGACGGTCAGNTAT 289 consensus_6951#1 -GCCCCTGCCGGAGCGTAA--GTTTGTGCGCGTACAAGGATCC-GACG-CGGTCAGCT-T 286 ******** ********* ************* ******* **** ******* * * consensus_6951#0 TACTGAGTGGNACTTGATTGACAGAAACGCATCATTGCTAGCNACCTACAGAGACACAA- 348 consensus_6951#1 TCTGCAGGGACTGATGACGAAC-GATATGCGACACCTCGAGCA-----CAGCAGCACGGT 340 * ** * *** ** ** * ** ** * *** *** *** consensus_6951#0 GCAAGCNACGGTGTTAACTGCGACATGTATTACTCCAAAGTGCGGANATAGGGGCGCTGT 408 consensus_6951#1 GTACGCAATGTTTCTCAAGGCGA-ATGGGCGCGTTTTCTGTGATACAATCAT--CTACAA 397 * * ** * * * * * **** *** * *** ** * consensus_6951#0 ATANTACATGGTTGCATNNCACAAATCATACTAACCACAGCGAGNCCCGGTGGGCTTGGG 468 consensus_6951#1 GCGGCCCGGGGCTGAACCGGCCGAC---TATTTGCTCGAGTGCGATGCGGCCGTTGCGCC 454 * ** ** * * * ** * * ** * * *** * * consensus_6951#0 AACACCCGGNGGCCCGGANGCTAAAATATATCTGGCATACCGANAGAGTTGCCGCAATTN 528 consensus_6951#1 GCGGCTCGAGAA-----ACACTTGAAGCTGTACCGGCTGCGCAAGAAGGTGCAGGTGG-A 508 * ** * ** ** * * * * * * ** *** * consensus_6951#0 GCNGATGGNCACCGGTGTNGGACAGGCCCCNGACAGTGGACACTTNCAGAANGGAACAGA 588 consensus_6951#1 GCAGGACGCCACCTACCGGGTGTGGGCCGCCTTCAAGGAGGCCGTGCAGGAGG-AAGAGG 567 ** * * **** * **** * ** * * * *** * * ** ** consensus_6951#0 ACGCACACCTTNATTNGGAACCAGCCTATGTTAACCCGGAGACTTTGNCTCCAATACAGG 648 consensus_6951#1 AGATGCCGGCTGCAAGCGATCTCGCCTGT------CCGGAGGGTCGGTTACACGTGTTCA 621 * * * ** * **** * ****** * * * * consensus_6951#0 CAAATG-TGGGTAGGCGAAGCA-GGTTA-CGAGGAAAGGCCAA-GAGAAGCGGCAGNNCA 704 consensus_6951#1 AAGATCCTCGACTGCCGCGGCTCGGCTATCGGGTGCTTACCGACGAGCAGGAGCCGAATG 681 * ** * * * ** ** ** ** ** * ** * *** ** ** * consensus_6951#0 AACCCCGACTAAAACCAAGGNGAGACAANTGGAATTGCGAGAGAGCCCCCGAAACACNTN 764 consensus_6951#1 AATGCAAAACGCGACTGAAGCGTATCTTCCCGGAGGCGGAGACGGTCGCCGACTCG-GCG 740 ** * * ** * * * * * * **** * * **** * consensus_6951#0 TTACCAACACGCGANACAGAGGCACCCGATCTGGCACAAACGATGANAATGGGCAACAAG 824 consensus_6951#1 CTACCG-TACACGGCGTTCCGGTATTCGCTC-GGTGTCGGCGAGGGAGAGACAAACCTGC 798 **** ** ** ** * ** ** ** *** * * * * consensus_6951#0 CAATGGAGGAAGAATTTAAGGNCACATGGAGGGATTATGGNACANCAGNACAGACGAGAT 884 consensus_6951#1 CGGACGGTAAATGCTTCCCGCTCGAGTGTAACTGCGATCTG------------------- 839 * * ** ** * * ** * ** consensus_6951#0 ACAACTACCCGAGCCCCTTTGGGNTACACACCCGGNNGGCNAGAGNGAGTATCCNCACGG 944 consensus_6951#1 ------------------------------------------------------------ consensus_6951#0 NGTCAGACACTAGCAACCAGGTTTAAGATTAATAGCCNACAACAAGGGAACTTTTCCCCC 1004 consensus_6951#1 ------------------------------------------------------------ consensus_6951#0 TTACCAGCTNGCAACATTATGCCANCCAACAG 1036 consensus_6951#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||