cluster # 6952

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Anopheles gambiae
cluster # 6952 cluster # 6952 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6952#0 length = 654 sequences # 1

consensus_6952#1 length = 605 sequences # 4
consensus_6952#2 length = 324 sequences # 1

consensusID : consensus_6952#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [CCGCGTTTAGTGCTTCCATCATCCATCGAAACCGTCGCCATTATTACGCACATTCACCTGCTGCCTTTTTTGGCACACAGCATCTCCTACATTCTTACCTGGGACAGCCAAGCTTCATCCCCATTCTTCCGTGATCATCGTTCCCAGCAGCGCACTATCGGTCGCTTTGTGTAAAAACCCGCACACACACAGACATACACTCAATTTCCCCTTTGGTTACAGTGCATTAGGGACAAAAAGTGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCGTGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACGGCGTAAGCTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTGTAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTTTTGCGTTCAACCCCTTCCGGGACAAAAAAAGCTCACCCCGCGAGAGCTTTGCGAGAATCTCGGCGTCTGCTGCTGCTGTCGTGTCGAAGAACGTGAATGCTTGGGTTGTCTTTGCTGGTGTGCGTCTTTGCTGGCATTAGGAACAAGCGGGCGAGAAACTAGGAACGGCGAACG]

[+] EMBL BM593429             [CCGCGTTTAGTGCTTCCATCATCCATCGAAACCGTCGCCATTATTACGCACATTCACCTGCTGCCTTTTTTGGCACACAGCATCTCCTACATTCTTACCTGGGACAGCCAAGCTTCATCCCCATTCTTCCGTGATCATCGTTCCCAGCAGCGCACTATCGGTCGCTTTGTGTAAAAACCCGCACACACACAGACATACACTCAATTTCCCCTTTGGTTACAGTGCATTAGGGACAAAAAGTGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCGTGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACGGCGTAAGCTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTGTAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTTTTGCGTTCAACCCCTTCCGGGACAAAAAAAGCTCACCCCGCGAGAGCTTTGCGAGAATCTCGGCGTCTGCTGCTGCTGTCGTGTCGAAGAACGTGAATGCTTGGGTTGTCTTTGCTGGTGTGCGTCTTTGCTGGCATTAGGAACAAGCGGGCGAGAAACTAGGAACGGCGAACG]




>consensus_6952#0
CCGCGTTTAGTGCTTCCATCATCCATCGAAACCGTCGCCATTATTACGCACATTCACCTG
CTGCCTTTTTTGGCACACAGCATCTCCTACATTCTTACCTGGGACAGCCAAGCTTCATCC
CCATTCTTCCGTGATCATCGTTCCCAGCAGCGCACTATCGGTCGCTTTGTGTAAAAACCC
GCACACACACAGACATACACTCAATTTCCCCTTTGGTTACAGTGCATTAGGGACAAAAAG
TGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCG
TGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACGGCGTA
AGCTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTG
TAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTT
TTGCGTTCAACCCCTTCCGGGACAAAAAAAGCTCACCCCGCGAGAGCTTTGCGAGAATCT
CGGCGTCTGCTGCTGCTGTCGTGTCGAAGAACGTGAATGCTTGGGTTGTCTTTGCTGGTG
TGCGTCTTTGCTGGCATTAGGAACAAGCGGGCGAGAAACTAGGAACGGCGAACG

consensusID : consensus_6952#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 605
fasta sequence

                              [CCG-GCGCTTTCAGTGTGTCCGTACGTGTGTTTCGCCGCTGTCGTCGTTGTGTGTTACCTTGTTGATGCTGCTGCCAGCCCTG---CTACCCGCAACACCGTGAACACCACCGTATCTCCATACCCACCGTTCTCACCGTGTGCTCACCCGTGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCGTGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACGGCGTAAGCTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTGTAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTTTTGCGTTCAA-CCCCTTCCGGGACAAA-AAAAGCTCACCCCGCGAGAGCTTTGCGAGAATCTCGGCGTCTGCTGCTGCTGTCGTGTCGAAGAACGTGAATGCTTGGGTTGTCTTTGCTGGTGTGCGTCTTTGCTGGCATTAGGAACAAGCGGGCGAGAAACTAGGAACGGCGAACGTAAACGCTCGTTACACGGGTTCTCTCAAAGCGGGCTATCTTCTA]

[+] EMBL BM580916             [CCGAGCGCTTTCAGTGTGTCCGTACGTGTGTTTCGCCGCTGTCGTCGTTGTGTGTTACCTTGTTGATGCTGCTGCCAGCCCTG   CTACCCGCAACACCGTGAACACCACCGTATCTCCATACCCACCGTTCTCACCGTGTGCTCACCCGTGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCGTGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACGGCGTAAGCTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTGTAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTTTTGCGTTCAA CCCCTTCCGGGACAAA AAAAGCTCACCCCGCGAGAGCTTTGCGAGAATCTCGGCGTCTGCTGCTGCTGTCGTGTCGAAGAACGTGAATGCTTGGGTTGTCTTTGCTGGTGTGCGTCTTTGCTGGCATTAGGAACAAGCGGGCGAGAAACTAGGAACGGCGAACGTAAACGCTCGTTACACGGGTTCTCTCAAAGCGGGCTATCTTCTA]
[+] EMBL BM641684             [CCG GCGCTTTCAGTGTGTCCGTACGTGTGTTTCGCCGTTGTCGTCGTTGTGTGTAACCTTGTTGATGCTGCTGCCAGCCCTGCTACTACCCGCAACACCGTGAACACCACCGTGTCTCCATACCCACCGTTCTCACCGTGTGCTCACCCGTGCCG CCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCGTGTGTGCGAGTGTGTGTGTGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACGGCGTAAGCTCG  GTGTGTCTCTCTGTGGATTTGTATGCAGATACGAGTAAAGTGTTTTGTTTTGTAAACCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTTTTGTCATAAGATTGTCAGCTTTTTGCGTTCAA CCCCTTCCGGGACAAATAAAAGCTCACCCCGCGAGAGCTTTGCGAGAATCTCGGCGT   CTGCTGCTGTCGTGTCGAAGAACGTGAATGCTTGGGTTGTCTTTGCTAGTGTGCGTCTTTGCTGGCATTAGGAACAAGCGGGCGATCAACTAGGTACGGCGAACGTATACCCTCGCTACACGAGTTCTCTC                  ]
[+] EMBL BM643141             [ cc GCGCTTTCAGTGTGTCCGTACGTGTGTTTCGCCGCTGTCGTCGTTGTGTGTTACCTTGTTGATGCTGCTGCCAGCCCTG   CTACCCGCAACACCGTGAACACCACCGTATCTCCATACCCACCGTTCTCACCGTGTGCTCACCCGTGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTG TTTGCGTGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACGGCGTAAGCTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTGTAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTTTTGCGTTCAA CCCCTTCCGGGACAAA AAAAGCTCACCCCGCGAGAGCTTTGCGAGAATCTCGGCGTCTGCTGCTGCTGTCGTGTCGAAGAACGTGAATGCTTGGGTTGTCTTTGCTGGTGTGCGTCTTTGCTGGCATTAGGAACAAGCGGGCGAGAAACTAGGAACGGCGAACGTAAACGCTCGTTACA                             ]
[+] EMBL BM596929             [                      ccgGTGTGTTTCGCCGTTGTCGTCGTTGTGTGTAACCTTGTTGATGCTGCTGCCAGCCCTGCTACTACCCGCAACACCGTGAACACCACCGTGTCTCCATACCCACCGTTCTCACCGTGTGCTCACCCGTGCCG CCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCGTGTGTGCGAGTGTGTGTGTGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACAGCGTAAGCTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACGAGTAAAGTGTTTTGTTTTGTAAAGTAACAAAGTGTGTGCAAGTGCGGTTTTTGGCTTTTGTCACAAGATTGTCAGCTTTTAGCGTTCAACCCCCTTCCGGGACAAATAAAAGCTCACCCCGCGAGAGCTTTGCGAGAATCTCGGCGT   CTGCTGCTGTCGTGTCGAAGAACGTGAATGCTTGGGTTGTCTTTGCTAGTGTGCGTCTTTGCT                                                                                      ]




>consensus_6952#1
CCGGCGCTTTCAGTGTGTCCGTACGTGTGTTTCGCCGCTGTCGTCGTTGTGTGTTACCTT
GTTGATGCTGCTGCCAGCCCTGCTACCCGCAACACCGTGAACACCACCGTATCTCCATAC
CCACCGTTCTCACCGTGTGCTCACCCGTGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAG
TGTGCGTGCGTGCGTTTGTGTTTTGCGTGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTG
TACGTGTGCACCGTGTGTAACGGCGTAAGCTCGGTGTGTGTCTCTCTGTGGATTTGTATG
CAGATACAAGTAAAGTGTTTTGTTTTGTAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTT
GGCTCTCGTCACAAGATTGTCAGCTTTTTGCGTTCAACCCCTTCCGGGACAAAAAAAGCT
CACCCCGCGAGAGCTTTGCGAGAATCTCGGCGTCTGCTGCTGCTGTCGTGTCGAAGAACG
TGAATGCTTGGGTTGTCTTTGCTGGTGTGCGTCTTTGCTGGCATTAGGAACAAGCGGGCG
AGAAACTAGGAACGGCGAACGTAAACGCTCGTTACACGGGTTCTCTCAAAGCGGGCTATC
TTCTA

consensusID : consensus_6952#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [TTGATGCTGCTGCCAGCCCTGCTACCCGCAACACCGTGTGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCGTGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACCGCGTAACTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTGTAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTTTTGCGTTCAACCCCTTCCGGGACAAAAAAGCTCACCCCGCGAGAGCT]

[+] EMBL CNS098NP             [TTGATGCTGCTGCCAGCCCTGCTACCCGCAACACCGTGTGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCGTGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACCGCGTAACTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTGTAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTTTTGCGTTCAACCCCTTCCGGGACAAAAAAGCTCACCCCGCGAGAGCT]




>consensus_6952#2
TTGATGCTGCTGCCAGCCCTGCTACCCGCAACACCGTGTGCCGCCCCAAAAGCAGCCCAA
TCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCGTGTGTGCGAGTGTGTGTGCGTG
TGTGCTGAGTGTACGTGTGCACCGTGTGTAACCGCGTAACTCGGTGTGTGTCTCTCTGTG
GATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTGTAAAGCCACAAAGTGTGTGCAAG
TGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTTTTGCGTTCAACCCCTTCCGGGAC
AAAAAAGCTCACCCCGCGAGAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6952#1      ------------------------------------------------------------
consensus_6952#2      ------------------------------------------------------------
consensus_6952#0      CCGCGTTTAGTGCTTCCATCATCCATCGAAACCGTCGCCATTATTACGCACATTCACCTG 60
                                                                                  

consensus_6952#1      -------------------------CCGGCGCTTTCAGTGTGTCCGTACGTGTGTTTCGC 35
consensus_6952#2      ------------------------------------------------------------
consensus_6952#0      CTGCCTTTTTTGGCACACAGCATCTCCTACATTCTTACCTGGGACAGCCAAGCTTCATCC 120
                                                                                  

consensus_6952#1      CGCTGTCGTCGTTGT-GTGTTACCTTGTTG-ATGCTGCTGCCAGCCCTGCT-----ACCC 88
consensus_6952#2      ---------------------------TTG-ATGCTGCTGCCAGCCCTGCT-----ACCC 27
consensus_6952#0      CCATTCTTCCGTGATCATCGTTCCCAGCAGCGCACTATCGGTCGCTTTGTGTAAAAACCC 180
                                                   *    **   *   **  **       ****

consensus_6952#1      GCA-ACACCGTGAACACCACCGTATCTCCATACCCACCGTTCTCACCGTGTGCTCACCCG 147
consensus_6952#2      GCA-ACACCGTG------------------------------------------------ 38
consensus_6952#0      GCACACACACAGACATACACTCAATTTCCCCTTTGGTTACAGTGCATTAGGGACAAAAAG 240
                      *** ****   *                                                

consensus_6952#1      TGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCG 207
consensus_6952#2      TGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCG 98
consensus_6952#0      TGCCGCCCCAAAAGCAGCCCAATCGTAGCCGAGTGTGCGTGCGTGCGTTTGTGTTTTGCG 300
                      ************************************************************

consensus_6952#1      TGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACGGCGTA 267
consensus_6952#2      TGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACCGCGTA 158
consensus_6952#0      TGTGTGCGAGTGTGTGTGCGTGTGTGCTGAGTGTACGTGTGCACCGTGTGTAACGGCGTA 360
                      ****************************************************** *****

consensus_6952#1      AGCTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTG 327
consensus_6952#2      A-CTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTG 217
consensus_6952#0      AGCTCGGTGTGTGTCTCTCTGTGGATTTGTATGCAGATACAAGTAAAGTGTTTTGTTTTG 420
                      * **********************************************************

consensus_6952#1      TAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTT 387
consensus_6952#2      TAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTT 277
consensus_6952#0      TAAAGCCACAAAGTGTGTGCAAGTGCGGTTTTTGGCTCTCGTCACAAGATTGTCAGCTTT 480
                      ************************************************************

consensus_6952#1      TTGCGTTCAACCCCTTCCGGGACAAAAAAAGCTCACCCCGCGAGAGCTTTGCGAGAATCT 447
consensus_6952#2      TTGCGTTCAACCCCTTCCGGGACAAAAAA-GCTCACCCCGCGAGAGCT------------ 324
consensus_6952#0      TTGCGTTCAACCCCTTCCGGGACAAAAAAAGCTCACCCCGCGAGAGCTTTGCGAGAATCT 540
                      ***************************** ******************            

consensus_6952#1      CGGCGTCTGCTGCTGCTGTCGTGTCGAAGAACGTGAATGCTTGGGTTGTCTTTGCTGGTG 507
consensus_6952#2      ------------------------------------------------------------
consensus_6952#0      CGGCGTCTGCTGCTGCTGTCGTGTCGAAGAACGTGAATGCTTGGGTTGTCTTTGCTGGTG 600
                                                                                  

consensus_6952#1      TGCGTCTTTGCTGGCATTAGGAACAAGCGGGCGAGAAACTAGGAACGGCGAACGTAAACG 567
consensus_6952#2      ------------------------------------------------------------
consensus_6952#0      TGCGTCTTTGCTGGCATTAGGAACAAGCGGGCGAGAAACTAGGAACGGCGAACG------ 654
                                                                                  

consensus_6952#1      CTCGTTACACGGGTTCTCTCAAAGCGGGCTATCTTCTA 605
consensus_6952#2      --------------------------------------
consensus_6952#0      --------------------------------------