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Anopheles gambiae
cluster # 6953 cluster # 6953       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6953#0 length = 1145 sequences # 3  
consensus_6953#1 length = 1033 sequences # 3  

consensusID : consensus_6953#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1145
fasta sequence
                              [TATACTAGCGCCGCGCTATGATTGTGCTATAATTTTTTATACCATAAAACCTATACATACATATACATACACCTACTTATATCATAGTGCGAAATATGAGCTGTTGAAAGCCACAACCCGTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGGAAGATAATTGCAATTACACAGAAGTAAACCGATCCTAGAAGAGGTTTAAAGACCCCAAAAAGGGATAGAAAAGGATAAATGACTACAACACTAAACACACACACACACACACACACTCACACACACACACACACACACACACACACACACCCAGACAAAGGATACACACCAACAAACAATTATGCAAATAATGGGTTTTGTACCGATTATGATGATCCGTTTGAACCGTTCAAGTAATTTCTGCACATAAAATCCAACAAACTGTTTTTATTCTAATTCTTACACTTCATCCCGTTTCTTACATTCTTATTACATGTCTGATGCACATGAGTTGTGCTTTTCTAACTACTTTTAATCGCTTGGTGCCGTAAACCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAAC-CCACAGCAACACAAACACACAAACAACCTGCATGCAGACAACACAAAAATGAAACCAAAACAAGAAGAACAAAAAAAACTACCCCAAAACCGACCATAAAACTATTTAACAGAACAACAACTACAACTACAAAACGTTACCACAATCAGTTTTCAATCGTCCGCAGCCGAACTACTGTTGAATATTTGATAAGTTTTAGCAGCTTAAACTTGTACTGCAACTTTTACTATATTTATCACAAGAAGAAACAGCAAAAAGGAGAATAAATGAAGAAAAACAGTGGAACACTGTCAAGTGAAAGAGGAAAAATAGAAGAAAGTTAAGAAAAAAATGCATAAAACCGTGTAAAGAAAGCAAATAAGAACGCATTGCTTGCGTGAGTGTGTGTGTGTGAGTGTGAAAGAAAAAGTGAATGGTGTGGAAAGGGGGAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAG]

[+] EMBL BX614158             [TATACTAGCGCCGCGCTATGATTGTGCTATAATTTTTTATACCATAAAACCTATACATACATATACATACACCTACTTATATCATAGTGCGAAATATGAGCTGTTGAAAGCCACAACCCGTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM642214             [                                                                                              ccgGAGCTGTTGAAAGCCACAACCCGTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGGAAGATAATTGCAATTACACAGAAGTAAACCGATCCTAGAAGAGGTTTAAAGACCCCAAAAAGGGATAGAAAAGGATAAATGACTACAACACTAAACACACACACACACACACACACTCACACACACACACACACACACACACACACACACCCAGACAAAGGATACACACCAACAAACAATTATGCAAATAATGGGTTTTGTACCGATTATGATGATCCGTTTGAACCGTTCAAGTAATTTCTGCACATAAAATCCAACAAACTGTTTTTATTCTAATTCTTACACTTCATCCCGTTTCTTACATTCTTATTACATGTCTGATGCACATGAGTTGTGCTTTTCTAACTACTTTTAATCGCTTGGTGCCGTAAACCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAAC CCACAGCAACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM642867             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ccgCTACTTTTAATCGCTTGGTGCCGTAAACCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAACACCACAGCAACACAAACACACAAACAACCTGCATGCAGACAACACAAAAATGAAACCAAAACAAGAAGAACAAAAAAAACTACCCCAAAACCGACCATAAAACTATTTAACAGAACAACAACTACAACTACAAAACGTTACCACAATCAGTTTTCAATCGTCCGCAGCCGAACTACTGTTGAATATTTGATAAGTTTTAGCAGCTTAAACTTGTACTGCAACTTTTACTATATTTATCACAAGAAGAAACAGCAAAAAGGAGAATAAATGAAGAAAAACAGTGGAACACTGTCAAGTGAAAGAGGAAAAATAGAAGAAAGTTAAGAAAAAAATGCATAAAACCGTGTAAAGAAAGCAAATAAGAACGCATTGCTTGCGTGAGTGTGTGTGTGTGAGTGTGAAAGAAAAAGTGAATGGTGTGGAAAGGGGGAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAG]


>consensus_6953#0 TATACTAGCGCCGCGCTATGATTGTGCTATAATTTTTTATACCATAAAACCTATACATAC ATATACATACACCTACTTATATCATAGTGCGAAATATGAGCTGTTGAAAGCCACAACCCG TTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGGAAGATAATTGCAATTA CACAGAAGTAAACCGATCCTAGAAGAGGTTTAAAGACCCCAAAAAGGGATAGAAAAGGAT AAATGACTACAACACTAAACACACACACACACACACACACTCACACACACACACACACAC ACACACACACACACCCAGACAAAGGATACACACCAACAAACAATTATGCAAATAATGGGT TTTGTACCGATTATGATGATCCGTTTGAACCGTTCAAGTAATTTCTGCACATAAAATCCA ACAAACTGTTTTTATTCTAATTCTTACACTTCATCCCGTTTCTTACATTCTTATTACATG TCTGATGCACATGAGTTGTGCTTTTCTAACTACTTTTAATCGCTTGGTGCCGTAAACCCT CAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAACCCACAGCAACACAA ACACACAAACAACCTGCATGCAGACAACACAAAAATGAAACCAAAACAAGAAGAACAAAA AAAACTACCCCAAAACCGACCATAAAACTATTTAACAGAACAACAACTACAACTACAAAA CGTTACCACAATCAGTTTTCAATCGTCCGCAGCCGAACTACTGTTGAATATTTGATAAGT TTTAGCAGCTTAAACTTGTACTGCAACTTTTACTATATTTATCACAAGAAGAAACAGCAA AAAGGAGAATAAATGAAGAAAAACAGTGGAACACTGTCAAGTGAAAGAGGAAAAATAGAA GAAAGTTAAGAAAAAAATGCATAAAACCGTGTAAAGAAAGCAAATAAGAACGCATTGCTT GCGTGAGTGTGTGTGTGTGAGTGTGAAAGAAAAAGTGAATGGTGTGGAAAGGGGGAAGAA TTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAA AACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGC AGCAG



consensusID : consensus_6953#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1033
fasta sequence
                              [AATTAATTCTTCCAATTGAACGAGAAAGAGAGAAAGTGGATAAAAGATTATGCATAAATGAAAGCGGGACATATTTCAATGCGAAACAACAAAAGAATTAAAGCCAAACAAACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGTGGGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAACAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACTCCCCAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGTTTGAGAGAATCAAAGACGAAAAAGAACAAGAAAAAAGGAAACGGAAGGAAATGAATGATTATTGAAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAGGAAACCAATGCACAGAAAAAGCAAATCGCTCGTCGAATAACAGCAAAACAAACACACATACAAACAAACAAAACTGGACAACCTAAGTAAGAAAGATCCGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAATAAAATGAGTAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAGACAAACAAACAAAAAACATTTAATGTTTACCGGACGGGGTGCGTTTTGTTTGAAGTGAAACACACAAACATAAACTGAAAACAATGCAAAGAAAGCGAGGAATAAGAATGGATGAGAAAGCAAAAGAAGCTAAGTGGAAGAAAATTAAAATTATATATATACACACAAACTATACATATACCTAAACGTATATATATATAAAGAAAGCAGGAAAAAAAGCAAACAAAAAGTAACAATTGAGGACAAACCAAAAAACCAAAAAAGAGGAAAACCCAAAACTGTTGTACGTCACGTTATGTTTTTAATTT]

[+] EMBL BX613568             [AATTAATTCTTCCAATTGAACGAGAAAGAGAGAAAGTGGATAAAAGATTATGCATAAATGAAAGCGGGACATATTTCAATGCGAAACAACAAAAGAATTAAAGCCAAACAAACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGTGGGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAACAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACTCCCCAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGTTTGAGAGAATCAAAGACGAAAAAGAACAAGAAAAAAGGAAACGGAAGGAAATGAATGATTATTGAAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAGGAAACCAATGCACAGAAAAAGCAAATCGCTCGTCGAATAACAGCAAAACAAACACACATACAAACAAACAAAACTGGACAACCTAAGTAAGAAAGATCCGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAATAAAATGAGTAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAG                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX614023             [                                                                                    AACAACAAAAGAATTAAAGCCAAACAAACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGTGGGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAACAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACTCCCCAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM614878             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgtGCAAATCGCTCGTCGAATAACAGCAAAACAAACACACATACAAACAAACAAAACTGGACAACCTAAGTAAGAAAGATCCGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAAGAAAATGAGTAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAGACAAACAAACAAAAAACATTTAATGTTTACCGGACGGGGTGCGTTTTGTTTGAAGTGAAACACACAAACATAAACTGAAAACAATGCAAAGAAAGCGAGGAATAAGAATGGATGAGAAAGCAAAAGAAGCTAAGTGGAAGAAAATTAAAATTATATATATACACACAAACTATACATATACCTAAACGTATATATATATAAAGAAAGCAGGAAAAAAAGCAAACAAAAAGTAACAATTGAGGACAAACCAAAAAACCAAAAAAGAGGAAAACCCAAAACTGTTGTACGTCACGTTATGTTTTTAATTT]


>consensus_6953#1 AATTAATTCTTCCAATTGAACGAGAAAGAGAGAAAGTGGATAAAAGATTATGCATAAATG AAAGCGGGACATATTTCAATGCGAAACAACAAAAGAATTAAAGCCAAACAAACAAAGCAT ACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGTGGGGGATGTA GCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAACAAAAACATATAC TCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACTCCCCAAATGTAAG CGCAAAATATGAAAACGCCCACTGGGTTAAAGTTTGAGAGAATCAAAGACGAAAAAGAAC AAGAAAAAAGGAAACGGAAGGAAATGAATGATTATTGAAAGAATTTGTAACAAAACAAAG AAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGA CTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAGGAAACCAATGCA CAGAAAAAGCAAATCGCTCGTCGAATAACAGCAAAACAAACACACATACAAACAAACAAA ACTGGACAACCTAAGTAAGAAAGATCCGAAGACGTTTCAATGCAATTTAACTTCGCACGG TGCATTGGCAGGGCAAATAAAATGAGTAAAGCAAGAACACTAGGGAAAATAGAGAAACAA GTAAGACAAACAAACAAAAAACATTTAATGTTTACCGGACGGGGTGCGTTTTGTTTGAAG TGAAACACACAAACATAAACTGAAAACAATGCAAAGAAAGCGAGGAATAAGAATGGATGA GAAAGCAAAAGAAGCTAAGTGGAAGAAAATTAAAATTATATATATACACACAAACTATAC ATATACCTAAACGTATATATATATAAAGAAAGCAGGAAAAAAAGCAAACAAAAAGTAACA ATTGAGGACAAACCAAAAAACCAAAAAAGAGGAAAACCCAAAACTGTTGTACGTCACGTT ATGTTTTTAATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6953#0      TATACTAGCGCCGCGCTATGATTGTGCTATAATTTTTTATACCATAAAACCTATACATAC 60
consensus_6953#1      --AATTAATTCT----TCCAATTGAACGAGAAAGAGAGAAAGTGGATAAAAGAT-TATGC 53
                         * **   *     *   ****  * * **      * *    * **   **  ** *

consensus_6953#0      ATATACATACACCTACTTATATCATAGTGCGAAATA-TGAGCTGTTGAAAGCCACAACCC 119
consensus_6953#1      ATAAATG-AAAGCGGGACATATTTCAATGCGAAACAACAAAAGAATTAAAGCCA--AACA 110
                      *** *   * * *     ****   * ******* *   *     * *******  * * 

consensus_6953#0      GTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGGAAGATAATTGCAATT 179
consensus_6953#1      AACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGT 170
                          * **   *        **  * ***   * *  *   ****** * * *  *** *

consensus_6953#0      ACACAGAAGTAAACCGATCCTAGAAGAGGTTTAAAGACCCCAAAAAGGGATAGAAAAGGA 239
consensus_6953#1      G---GGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAA 227
                           *   *  * * *    *    *     ***  *        * ***    **  *

consensus_6953#0      TAAATGACTACAACACTAAACACACACACACACAC-ACACACTCACA-CACACACACACA 297
consensus_6953#1      CAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACT 287
                       ***    ** *                             ** * * * * * ** ** 

consensus_6953#0      CACACACACACACACACCCAGACAAAGGATACACACCAA-CAAACAATTATGCAAATAAT 356
consensus_6953#1      CCC-CAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGTTTGAGAGAATCAA 346
                      * * ** *   *  * *  *     *  *  * ***      **   **  *  *** * 

consensus_6953#0      GGGTTTTGTACCGATTATGATGATCCGTTTGAACCGTTCAAGTAATTTCTGCACATAAAA 416
consensus_6953#1      AGACGAAAAAGAACAAGAAAAAAGGAAACGGAAGGAAATGAATGATTATTG-AAAGAATT 405
                       *       *         *  *       ***       * * ***  ** * * **  

consensus_6953#0      TCCAACAAACTGTTTTTATTCTAATTCTTACACTTCATCCCGTTTCTTACATTCTTATTA 476
consensus_6953#1      TGTAACAAAACAAAGAAAATGAGAAAACGGTA-TCGATAGCAATTGCAAAGCAGTTA--- 461
                      *  ******        * *   *       * *  **  *  **   *     ***   

consensus_6953#0      CATGTCTGATGCACATGAGTTGTGCTTTTCTAACTACTTTTAATCGCTTGGTGCCGTAAA 536
consensus_6953#1      -AAAACTAATGCAAAAGCGACTTAAATATA-GTTCAGTCGTAGT--TTAGGCACTGTAGG 517
                       *   ** ***** * * *   *   * *      * *  ** *   * **  * ***  

consensus_6953#0      CCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAACCCACAGCAAC 596
consensus_6953#1      GCGAGCAGCAGGAAACCAAT-GCACA-GAAAAAGCAAATCGCTCGTCGAATAACAGCAAA 575
                       *    * * *   **   * * * * **   *  **  *    *   *   ******* 

consensus_6953#0      ACAAACACACAAACAACCTGCATGCAGACAACACAAAAATGAAACCAAAACAAGAAGAAC 656
consensus_6953#1      ACAAACACACATACAA-------ACAAACAAAACTGGA--CAACCTAAGTAAGAAAGATC 626
                      *********** ****        ** **** **   *   ** * **   *  **** *

consensus_6953#0      AAAAAAAACTACCCCAAAACCGACCATAAAACTATTTAACAGAACAACAACTACAACTA- 715
consensus_6953#1      CGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAATAAAATGAG 686
                        ** *   * *     **   * * *   **  *  *   * *   *** ** **  * 

consensus_6953#0      CAAAACGTTACCACAATCAGTTTTCAATCGTCCGC--AGCCGAACTACTGTTGAATATTT 773
consensus_6953#1      TAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAGACAAACAAACAAAAAACATTT 746
                       *** *   * *** *       *  *    *     ** * *** *      ** ****

consensus_6953#0      GATAAGTTTTAGCAGCTTAAACTTGTACTGCAACTTTTACTATATTTATCACAAGAAGAA 833
consensus_6953#1      AATG---TTTACCGGACGGGGTGCGTTTTG-----TTTGAAGTGAAACACACAAACATAA 798
                       **    **** * *         **  **     ***    *      *****  * **

consensus_6953#0      ACAGCAAAAA--GGAGAATAAATGAAGAAAAACAGTGGAACACTGTCAAGTGAAAGAGGA 891
consensus_6953#1      ACTGAAAACAATGCAAAGAAAGCGAGGAATAAGAATGGATGAGA---AAGCAAAAGAAGC 855
                      ** * *** *  * * *  **  ** *** ** * ****  *     ***  ***** * 

consensus_6953#0      AAAATAGAAGAAAGTTAAGAAAAAAATGCATAAAACCGTGTAAAGAAAGCAAATAAGAAC 951
consensus_6953#1      TAAGTGGAAGAAAATTAA-----AATTATATATATACACACAAACTATACATATA----- 905
                       ** * ******* ****     ** *  *** *  *    ***  *  ** ***     

consensus_6953#0      GCATTGCTTGCGTGAGTGTGTGTGTGT-GAGTGTGAAAGAAAAAGTGAATGGTGTGGAAA 1010
consensus_6953#1      ------CCTAAACGTATATATATATAAAGAAAGCAGGAAAAAAAGCAAACAAAAAGTAAC 959
                            * *    *  * * * * *   **  *    * ******  **      * ** 

consensus_6953#0      GGGGGAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAA 1070
consensus_6953#1      AATTGAGGACAAACCAAAAAACCAAAAAAGAGGAAAACCCAAAACTGTTGTACGTCACGT 1019
                          ** **      ** *** **** ** * ** **  *   *  * *     *  *  

consensus_6953#0      AGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTG 1130
consensus_6953#1      TATGTTTTTAATTT---------------------------------------------- 1033
                           **  **  *                                              

consensus_6953#0      TAGGGCGAGCAGCAG 1145
consensus_6953#1      ---------------
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)