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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1065 fasta sequence
[CGAATGCGAAAAAAGAGGTTGGATTTCCGTCGGACGCTCGTTCGCTTTCTGCTCGAAGCTTTGAACGCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGTTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACCGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGGTGATTACTATCCACACGAGACGAACGTCGGGTGGCGGAG-CATCGATAAGTAGTGTCCTCCCAGTGTGTTCTCACGCCGATCCGCGTTGTGAAATACGGCAGCATCCTTTTGTGCGACGGTGAAGAATCCTCCGCTGGCGGGTGCTTCTGTGTGAAGTCGCCGTGTGTGAGAGAGAGAGAGCGGGAAAGAGAAAGCGTAGACACGCGAGAGGGAAAGGGATCGTCTCGCAGCCGTCATCAAACAACTATTGTGTTTCGTACCGTGTTTGACGTTTACCGTGACTGGCAGACCGTTTTTTGGACGTCGGTCGATTGTTCCGTTGGGTTTTATGGCCAAAAAAAACTAGCAGCCCGACCGCTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCACATACTCTATCGCGTCATCATCGCCAGCAGCAGTAGCACTACCACCATCACCAACATCATCATCATCATCAGCATCGATCCGTTCGTCCGACTGGCGCAG-GTGGTGCGACACAACAGTGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGTAAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCATTCGTGGTTGTGTGTATCTGTGTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGTGTGCATACGTGTGTAGTGTGTTTATGTATGTATTGTTAATTAAAAAAAAAAAAA]
[+] EMBL CNS08R2D [CGAATGCGAAAAAAGAGGTTGGATTTCCGTCGGACGCTCGTTCGCTTTCTGCTCGAAGCTTTGAACGCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGTTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACCGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGGTGATTACTATCCACACGAGACGAACGTCGGGTGGCGGAG CATCGATAAGTAGTGTCCTCCCAGTGTGTTCTCACGCCGATCCGCGTTGTGAAATACGGCAGCATCCTTTTGTGCGACGGTGAAGAATCCTCCGCTGGCGGGTGCTTCTGTGTGAAGTCGCCGTGTGTGAGAGAGAGAGAGCGGGAAAGAGAAAGCGTAGACACGCGAGAGGGAAAGGGATCGTCTCGCAGCCGTCATCAAACAACTATTGTGTTTCGTACCGTGTTTGACGTTTACCGTGACTGGCAGACCGTTTTTTGGACGTCGGTCGATTGTTCCGTTGGGTTTTATGGCCAAAAAAAACTAGCAGCCCGACCGCTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCACATACTCTATCGCGTCATCATCGCCAGCAGCAGTAGCACTACCACCATCACCAACATCATCATCATCATCAGCATCGATCCGTTCGTCCGACTGGCGCAG GTGGTGCGACACAACAGTGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGTAAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCATTCGTGGTTGTGTGTATCTGTGTGTGTGTGCGTGTGCCAAGTCGTTGG ]
[-] EMBL CNS08R2E [ TAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTA TGCGTAACGGTCCGTTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACCGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTTTATCGCACATCATCATCTCCCCTGGCAAACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGGTGATTACTATCCACACGAGACGAACGTC GGTGGCGGAGCCATCGATAATTAGTGTCCTCCCAGTGTGTTCTCACGCCGATCCGCGTTGTGAAATACGGCAGCATCCTTTTGTGCGACGGTGAAGAATCCTCCGCTGGCGGGTGCTTCTGTGTGAAGTCGCCGTGTGTGAGAGAGAGAGAGCGGGAAAGAGAAAGCGTAGACACGCGAGAGGGAAAGGGATCGTCTCGCAGCCGTCATCAAACAACTATTGTGTTTCGTACCGTGTTTGACGTTTACCGTAACTGGCAGACCGTTTTTTGGACGTCGGTCGATTGTTCCGTTGGGTTTTATGGCCAAGAAAAACTAGCAGCCCGACCGCTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCACATACTTTATCGCGTCATCATCGCCAGCAGCAGTAGCACTACCACCATCACCAACATCATCATCATCATCAGCATCGATCCGTTCGTCCCACTGGCGCAGCGT GTGCGACACAACAGTGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGTAAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCATTCGTGGTTGTGTGTATCTGTGTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGTGTGCATACGTGTGTAGTGTGTTTATGTATGTATTGTTAATTAAAAAAAAAAAAA]
consensusID : consensus_6954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 973 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGCTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACTGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGGAAAACGTACCGCGATCTCGCAATAAGGATCCTGTGGAACGAGTGCGGCTTTGTGCTTAAGTGAAATTTGTGCACGGGATTTGCTAACCCATCCGTCGAGGAACGTCAAAGTGTGCTACGAAACAGCGCGAAAGAGAGGCAGTATTACCGTCAGCAAGCGTACCACCATCGCAGAGAAACCCGAACCTTCGATCGAACCAGACCCGGTTAATGCGAAACAATGGCAATTGTCAAGGATAGTGCAACATTCTTCCAGCACGGCAACTCGGCCCAGTTCGACTACGTGCTCAAGCTGTACCCGTAAGCCCTGAAGCTGAAGGCAGAAACGCGAGGCAATGGCAAAAAGGCAGATAAACTATTACGCCTCGAAAAGTGGTACCAGAACGAGCTGCCGAAGTTGATCAAAACTCGTGGCCGCGATGCTCACCTGCTGCACGAAGAGCTGGTACAGACGATGGAGTGGAAGCAGACGCGCGGCAAGTTCTACCCGCAGCTGTCCTATCGGGGCAAAATCAACACACCCCGGGCGGTGGTGATGGAGACGAAGAAAGCTTTCCGGAAGCTGCCGAACCTGGAGCAGGCACTGAATTCTCTCTCGAACCTGAAGGGTGTGGGAATTACGATGGCATCGGCTTTGCTGGCTGCTGCTGCACCGGAAAGCGCGCCCTTCATGGCTGACGAATGTCTGA]
[+] EMBL BM626123 [CCGCCCACGCGTCCGCCCACGCGTCCGGCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGCTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACTGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGG ]
[+] EMBL CNS08PF3 [ GTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGTTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACCGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGCAAAACGTACCGCGATCTCGCAATAAGGATCCTGTGGAACGAGTGCGGCTTTGTGCTTAAGTGAAATTTGTGCACGGGATTTGCTAACCCATCCGTCGAGGAACGTCAAAGTGTGCTACGAAACAGCGCGAAAGAGAGGCAGTATTACCGTCAGCAAGCGTACCACCATCGCAGAGAAACCCGAACCTTCGATCGAACCAGACCCGGTTAATGCGAAACAATGGCAATTGTCAAGGATAGTGCAACATTCTTCCAGCACGGCAACTCGGCCCAGTTCGACTACGTGCTCAAGCTGTACCCGTAAGCCCTGAAGCTGAAGGCAGAAACGCGAGGCAATGGCAAAAAGGCAGATAAACTATTACGCCTCGAAAAGTGGTACCAGAACGAGCTGCCGAAGTTGATCAAAACTCGTGGCCGCGATGCTCACCTGCTGCACGAAGAGCTGGTACAGACGATGGAGTGGAAGCAGACGCGCGGCAAGTTCTACCCGCAGCTGTCCTATCGGGGCAAAATCAACACACCCCGGGCGGTGGTGATGGAGACGAAGAAAGCTTTCCGGAAGCTGCCGAACCTGGAGCAGGCACTGAATTCTCTCTCGAACCTGAAGGGTGTGGGAATTACGATGGCATCGGCTTTG ]
[+] EMBL CNS0983S [ TTACCGTCAGCAAGCGTACCACCATCGCAGAGAAACCCGAACCTTCGATCGAACCAAACCCGGTTAATGCGAAACAATGGCAATTGTCAAGGATAGTGCAACATTCTTCCAGCACGGCAACTCGGCCCAGTTCGACTACGTGCTCAAGCTGTACCCGCCAGCCCTGAAGTTGAAGGCAGAAACGAGAGGCAACGGCAAAAAGGCAGATAAACTATTACGCCTCGAAAAGTGGTACCAGAACGAGCTGCCGAAGTTGATCAAAACTCGTGGCCGCGATGCTCACCTGCTGCACGAAGAGCTGGTACAGACGATGGAGTGGAAGCAGACGCGCGGCAAGTTCTACCCGCAGCTGTCCTATCTCATCAAAATCAACACACCCCGGGCGGTGGTGATGGAGACGAAGAAAGCTTTCCGGAAGCTGCCGAACCTGGAGCAGGCCCTGAATGCTCTCTCGAACCTGAAGGGTGTGGGAATTACGATGGCATCGGCTTTGCTGGCTGCTGCTGCACCGGAAAGCGCGCCCTTCATGGCTGACGAATGTCTGA]
consensusID : consensus_6954#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence
[CCGGCCAAGAAAAACTAGCAGCCCGACCGCTTTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCACATACTCTATCGCGTCATCATCGCCAGCAGCAGTAGCACTACCACCATCACCAACATCATCATCAGCATCGATCCGTTCGTCCGACTGGCGCAGCGTGTGCGACACAACAGTGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGTAAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCATTCGTGGTTGTGTGTATCTGTGTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGTGTGCATACGTGTGTAGTGTGTTTATGTATGTATGCGGAATTTTCCACCATTAGCGTCGTGCAATTTTTTCCAGCAAAACGTACCGCGATCTCGCAATAAGGATCCTGTGGAACGAGTGCGGCTTTGTGCTTAAGTGAAATTTGTGCACGGGATTTGCTAACCCATCCGTCGAGGAACGTCAAAGTGTGCTACGAAACAGCGCGAAAGAGAGGCAGTATT]
[+] EMBL BM614902 [CCGGCCAAGAAAAACTAGCAGCCCGACCGCTTTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCACATACTCTATCGCGTCATCATCGCCAGCAGCAGTAGCACTACCACCATCACCAACATCATCATCAGCATCGATCCGTTCGTCCGACTGGCGCAGCGTGTGCGACACAACAGTGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGTAAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCATTCGTGGTTGTGTGTATCTGTGTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGTGTGCATACGTGTGTAGTGTGTTTATGTATGTATGCGGAATTTTCCACCATTAGCGTCGTGCAATTTTTTCCAGCAAAACGTACCGCGATCTCGCAATAAGGATCCTGTGGAACGAGTGCGGCTTTGTGCTTAAGTGAAATTTGTGCACGGGATTTGCTAACCCATCCGTCGAGGAACGTCAAAGTGTGCTACGAAACAGCGCGAAAGAGAGGCAGTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6954#0 CGAATGCGAAAAAAGAGGTTGGATTTCCGTCGGACGCTCGTTCGCTTTCTGCTCGAAGCT 60
consensus_6954#2 ------------------------------------------------------------
consensus_6954#1 -------------------------------------CCGCCCACGCGTCCGCCCACGCG 23
consensus_6954#0 TTGAACGCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTG 120
consensus_6954#2 ------------------------------------------------------------
consensus_6954#1 TCCG--GCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTG 81
consensus_6954#0 AAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGTTGGTGC 180
consensus_6954#2 ------------------------------------------------------------
consensus_6954#1 AAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGCTGGTGC 141
consensus_6954#0 AGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACCGTGGCGGTTTTAAGTAGCAAACC 240
consensus_6954#2 ------------------------------------------------------------
consensus_6954#1 AGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACTGTGGCGGTTTTAAGTAGCAAACC 201
consensus_6954#0 GTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTT 300
consensus_6954#2 ------------------------------------------------------------
consensus_6954#1 GTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTT 261
consensus_6954#0 CTTCACGGTGTAGCAGTTGCACGGTGATTACTATCCACACGAGACGAACGTCGGGTGGCG 360
consensus_6954#2 ------------------------------------------------------------
consensus_6954#1 CTTCACGGTGTAGCAGTTGCACGGAA--------------------AACGTACCGCGATC 301
consensus_6954#0 GAGCATCGATAAGTAGTGTCCTCCCAGTGTGTTCTCACGCCGATCCGCGTTGTGAAATAC 420
consensus_6954#2 ------------------------------------------------------------
consensus_6954#1 TCGCAATAA-GGATCCTGTGGAACGAGTGCGGCTTTGTGCTTAAGTGAAATTTGTGC--- 357
consensus_6954#0 GGCAGCATCCTTTTGTGCGACGGTGAAGAATCCTCCGCTGGCGGGTGCTTCTGTGTGAAG 480
consensus_6954#2 ------------------------------------------------------------
consensus_6954#1 -ACGGGATTTGCTAACCCATCCGTCGAGGAACGTCAAAG------------TGTGCTACG 404
consensus_6954#0 TCGCCGTGTGTGAGAGAGAGAGAGCGGGAAAGAGAAAGCGTAGACACGCGAGAGGGAAAG 540
consensus_6954#2 ------------------------------------------------------------
consensus_6954#1 AAACAGCGCGAAAGAGAGGCAGTATTACCGTCAGCAAGCGTACCACCATCGCAGAGAAA- 463
consensus_6954#0 GGATCGTCTCGCAGCCGTCATCAAACAACTATTGTGTTTCGTACCGTGTTTGACGTTTAC 600
consensus_6954#2 ------------------------------------------------------------
consensus_6954#1 -------CCCGAACCTTCGATCGAACCAGACCCGGTTAATGCGAAACAAT-GGCAATTGT 515
consensus_6954#0 CGTGACTGGCAGACCGTTTTTTGGACGTCGGTCGATTGTTCCGTTGGGTTTTATGGCCAA 660
consensus_6954#2 ----------------------------------------------------CCGGCCAA 8
consensus_6954#1 CAAGGATAGTGCAACATTCTTCCAGCACGGCAACTCGGCCCAGTTCGACTACGTGCTCAA 575
* ***
consensus_6954#0 AAAAAACTAGCA-GCCCGACCGCTTTTTTT--CGCCTGACGCGTTGTCCGTGAGCAGCCA 717
consensus_6954#2 GAAAAACTAGCA-GCCCGACCGCTTTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCA 67
consensus_6954#1 GCTGTACCCGTAAGCCCTGAAGCTGAAGGC--AGAAACGCGAGGCAATGGCAAAAAGGCA 633
** * * **** *** * ** * * * ** **
consensus_6954#0 CATACTCTATCGCGTCATCATCGCCAGCAGCAGTA-GCACTACCACCATC-ACCAACA-T 774
consensus_6954#2 CATACTCTATCGCGTCATCATCGCCAGCAGCAGTA-GCACTACCACCATC-ACCAACA-T 124
consensus_6954#1 GATAAACTATTACGCCTCGAAAAGTGGTACCAGAACGAGCTGCCGAAGTTGATCAAAACT 693
*** **** ** * * * * *** * * ** ** * * *** * *
consensus_6954#0 CATCATCATCATCAGCATCGATCCGTTCGTCCGACTGGCGCAGGTGGTGCGACACAA-CA 833
consensus_6954#2 CATCATCA------GCATCGATCCGTTCGTCCGACTGGCGCAGCGTGTGCGACACAA-CA 177
consensus_6954#1 CGTGGCCGCGATGCTCACCTG-CTGCACGAAGAGCTGGTACAGACGATGGAGTGGAAGCA 752
* * * ** * * * ** **** *** ** ** **
consensus_6954#0 G-TGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGT 892
consensus_6954#2 G-TGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGT 236
consensus_6954#1 GACGCGCGGCAAGTTCTACCCGCAGCTGTCCTATCGGGGCAAAATCAACACACCCCGGGC 812
* *** ** ** ** * * *** * *** * * ** * * *
consensus_6954#0 AAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCA 952
consensus_6954#2 AAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCA 296
consensus_6954#1 GGTGGTGATGGAGACGAAGAAAGCTTTCCGGAAGC----TGCCGAACCTGGAGCAGGCAC 868
** ** * *** * ** * *** * * * *
consensus_6954#0 TTCGTGGTTGTGTGTATCTGT-GTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGT 1011
consensus_6954#2 TTCGTGGTTGTGTGTATCTGT-GTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGT 355
consensus_6954#1 TGAATTCTCTCTCGAACCTGAAGGGTGTGGGAAT-TACGATGGCATCGGCTTTGCTGGCT 927
* * * * * *** * ***** * * * * * * * * ** * * * *
consensus_6954#0 GTGCATACGT-GTGTAGTGTGTTTATGTATGTATTGTTAATTAAAAAAAAAAAAA----- 1065
consensus_6954#2 GTGCATACGT-GTGTAGTGTGTTTATGTATGTATGCGGAATTTTCCACCATTAGCGTCGT 414
consensus_6954#1 GCTGCTGCACCGGAAAGCGCGCCC-TTCATGGCTGACGAATGTCTGA------------- 973
* * * * ** * * * *** * *** *
consensus_6954#0 ------------------------------------------------------------
consensus_6954#2 GCAATTTTTTCCAGCAAAACGTACCGCGATCTCGCAATAAGGATCCTGTGGAACGAGTGC 474
consensus_6954#1 ------------------------------------------------------------
consensus_6954#0 ------------------------------------------------------------
consensus_6954#2 GGCTTTGTGCTTAAGTGAAATTTGTGCACGGGATTTGCTAACCCATCCGTCGAGGAACGT 534
consensus_6954#1 ------------------------------------------------------------
consensus_6954#0 ----------------------------------------
consensus_6954#2 CAAAGTGTGCTACGAAACAGCGCGAAAGAGAGGCAGTATT 574
consensus_6954#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||