These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1065 fasta sequence [CGAATGCGAAAAAAGAGGTTGGATTTCCGTCGGACGCTCGTTCGCTTTCTGCTCGAAGCTTTGAACGCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGTTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACCGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGGTGATTACTATCCACACGAGACGAACGTCGGGTGGCGGAG-CATCGATAAGTAGTGTCCTCCCAGTGTGTTCTCACGCCGATCCGCGTTGTGAAATACGGCAGCATCCTTTTGTGCGACGGTGAAGAATCCTCCGCTGGCGGGTGCTTCTGTGTGAAGTCGCCGTGTGTGAGAGAGAGAGAGCGGGAAAGAGAAAGCGTAGACACGCGAGAGGGAAAGGGATCGTCTCGCAGCCGTCATCAAACAACTATTGTGTTTCGTACCGTGTTTGACGTTTACCGTGACTGGCAGACCGTTTTTTGGACGTCGGTCGATTGTTCCGTTGGGTTTTATGGCCAAAAAAAACTAGCAGCCCGACCGCTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCACATACTCTATCGCGTCATCATCGCCAGCAGCAGTAGCACTACCACCATCACCAACATCATCATCATCATCAGCATCGATCCGTTCGTCCGACTGGCGCAG-GTGGTGCGACACAACAGTGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGTAAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCATTCGTGGTTGTGTGTATCTGTGTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGTGTGCATACGTGTGTAGTGTGTTTATGTATGTATTGTTAATTAAAAAAAAAAAAA] [+] EMBL CNS08R2D [CGAATGCGAAAAAAGAGGTTGGATTTCCGTCGGACGCTCGTTCGCTTTCTGCTCGAAGCTTTGAACGCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGTTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACCGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGGTGATTACTATCCACACGAGACGAACGTCGGGTGGCGGAG CATCGATAAGTAGTGTCCTCCCAGTGTGTTCTCACGCCGATCCGCGTTGTGAAATACGGCAGCATCCTTTTGTGCGACGGTGAAGAATCCTCCGCTGGCGGGTGCTTCTGTGTGAAGTCGCCGTGTGTGAGAGAGAGAGAGCGGGAAAGAGAAAGCGTAGACACGCGAGAGGGAAAGGGATCGTCTCGCAGCCGTCATCAAACAACTATTGTGTTTCGTACCGTGTTTGACGTTTACCGTGACTGGCAGACCGTTTTTTGGACGTCGGTCGATTGTTCCGTTGGGTTTTATGGCCAAAAAAAACTAGCAGCCCGACCGCTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCACATACTCTATCGCGTCATCATCGCCAGCAGCAGTAGCACTACCACCATCACCAACATCATCATCATCATCAGCATCGATCCGTTCGTCCGACTGGCGCAG GTGGTGCGACACAACAGTGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGTAAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCATTCGTGGTTGTGTGTATCTGTGTGTGTGTGCGTGTGCCAAGTCGTTGG ] [-] EMBL CNS08R2E [ TAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTA TGCGTAACGGTCCGTTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACCGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTTTATCGCACATCATCATCTCCCCTGGCAAACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGGTGATTACTATCCACACGAGACGAACGTC GGTGGCGGAGCCATCGATAATTAGTGTCCTCCCAGTGTGTTCTCACGCCGATCCGCGTTGTGAAATACGGCAGCATCCTTTTGTGCGACGGTGAAGAATCCTCCGCTGGCGGGTGCTTCTGTGTGAAGTCGCCGTGTGTGAGAGAGAGAGAGCGGGAAAGAGAAAGCGTAGACACGCGAGAGGGAAAGGGATCGTCTCGCAGCCGTCATCAAACAACTATTGTGTTTCGTACCGTGTTTGACGTTTACCGTAACTGGCAGACCGTTTTTTGGACGTCGGTCGATTGTTCCGTTGGGTTTTATGGCCAAGAAAAACTAGCAGCCCGACCGCTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCACATACTTTATCGCGTCATCATCGCCAGCAGCAGTAGCACTACCACCATCACCAACATCATCATCATCATCAGCATCGATCCGTTCGTCCCACTGGCGCAGCGT GTGCGACACAACAGTGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGTAAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCATTCGTGGTTGTGTGTATCTGTGTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGTGTGCATACGTGTGTAGTGTGTTTATGTATGTATTGTTAATTAAAAAAAAAAAAA] consensusID : consensus_6954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 973 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGCTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACTGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGGAAAACGTACCGCGATCTCGCAATAAGGATCCTGTGGAACGAGTGCGGCTTTGTGCTTAAGTGAAATTTGTGCACGGGATTTGCTAACCCATCCGTCGAGGAACGTCAAAGTGTGCTACGAAACAGCGCGAAAGAGAGGCAGTATTACCGTCAGCAAGCGTACCACCATCGCAGAGAAACCCGAACCTTCGATCGAACCAGACCCGGTTAATGCGAAACAATGGCAATTGTCAAGGATAGTGCAACATTCTTCCAGCACGGCAACTCGGCCCAGTTCGACTACGTGCTCAAGCTGTACCCGTAAGCCCTGAAGCTGAAGGCAGAAACGCGAGGCAATGGCAAAAAGGCAGATAAACTATTACGCCTCGAAAAGTGGTACCAGAACGAGCTGCCGAAGTTGATCAAAACTCGTGGCCGCGATGCTCACCTGCTGCACGAAGAGCTGGTACAGACGATGGAGTGGAAGCAGACGCGCGGCAAGTTCTACCCGCAGCTGTCCTATCGGGGCAAAATCAACACACCCCGGGCGGTGGTGATGGAGACGAAGAAAGCTTTCCGGAAGCTGCCGAACCTGGAGCAGGCACTGAATTCTCTCTCGAACCTGAAGGGTGTGGGAATTACGATGGCATCGGCTTTGCTGGCTGCTGCTGCACCGGAAAGCGCGCCCTTCATGGCTGACGAATGTCTGA] [+] EMBL BM626123 [CCGCCCACGCGTCCGCCCACGCGTCCGGCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGCTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACTGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGG ] [+] EMBL CNS08PF3 [ GTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTGAAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGTTGGTGCAGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACCGTGGCGGTTTTAAGTAGCAAACCGTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTTCTTCACGGTGTAGCAGTTGCACGCAAAACGTACCGCGATCTCGCAATAAGGATCCTGTGGAACGAGTGCGGCTTTGTGCTTAAGTGAAATTTGTGCACGGGATTTGCTAACCCATCCGTCGAGGAACGTCAAAGTGTGCTACGAAACAGCGCGAAAGAGAGGCAGTATTACCGTCAGCAAGCGTACCACCATCGCAGAGAAACCCGAACCTTCGATCGAACCAGACCCGGTTAATGCGAAACAATGGCAATTGTCAAGGATAGTGCAACATTCTTCCAGCACGGCAACTCGGCCCAGTTCGACTACGTGCTCAAGCTGTACCCGTAAGCCCTGAAGCTGAAGGCAGAAACGCGAGGCAATGGCAAAAAGGCAGATAAACTATTACGCCTCGAAAAGTGGTACCAGAACGAGCTGCCGAAGTTGATCAAAACTCGTGGCCGCGATGCTCACCTGCTGCACGAAGAGCTGGTACAGACGATGGAGTGGAAGCAGACGCGCGGCAAGTTCTACCCGCAGCTGTCCTATCGGGGCAAAATCAACACACCCCGGGCGGTGGTGATGGAGACGAAGAAAGCTTTCCGGAAGCTGCCGAACCTGGAGCAGGCACTGAATTCTCTCTCGAACCTGAAGGGTGTGGGAATTACGATGGCATCGGCTTTG ] [+] EMBL CNS0983S [ TTACCGTCAGCAAGCGTACCACCATCGCAGAGAAACCCGAACCTTCGATCGAACCAAACCCGGTTAATGCGAAACAATGGCAATTGTCAAGGATAGTGCAACATTCTTCCAGCACGGCAACTCGGCCCAGTTCGACTACGTGCTCAAGCTGTACCCGCCAGCCCTGAAGTTGAAGGCAGAAACGAGAGGCAACGGCAAAAAGGCAGATAAACTATTACGCCTCGAAAAGTGGTACCAGAACGAGCTGCCGAAGTTGATCAAAACTCGTGGCCGCGATGCTCACCTGCTGCACGAAGAGCTGGTACAGACGATGGAGTGGAAGCAGACGCGCGGCAAGTTCTACCCGCAGCTGTCCTATCTCATCAAAATCAACACACCCCGGGCGGTGGTGATGGAGACGAAGAAAGCTTTCCGGAAGCTGCCGAACCTGGAGCAGGCCCTGAATGCTCTCTCGAACCTGAAGGGTGTGGGAATTACGATGGCATCGGCTTTGCTGGCTGCTGCTGCACCGGAAAGCGCGCCCTTCATGGCTGACGAATGTCTGA] consensusID : consensus_6954#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [CCGGCCAAGAAAAACTAGCAGCCCGACCGCTTTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCACATACTCTATCGCGTCATCATCGCCAGCAGCAGTAGCACTACCACCATCACCAACATCATCATCAGCATCGATCCGTTCGTCCGACTGGCGCAGCGTGTGCGACACAACAGTGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGTAAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCATTCGTGGTTGTGTGTATCTGTGTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGTGTGCATACGTGTGTAGTGTGTTTATGTATGTATGCGGAATTTTCCACCATTAGCGTCGTGCAATTTTTTCCAGCAAAACGTACCGCGATCTCGCAATAAGGATCCTGTGGAACGAGTGCGGCTTTGTGCTTAAGTGAAATTTGTGCACGGGATTTGCTAACCCATCCGTCGAGGAACGTCAAAGTGTGCTACGAAACAGCGCGAAAGAGAGGCAGTATT] [+] EMBL BM614902 [CCGGCCAAGAAAAACTAGCAGCCCGACCGCTTTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCACATACTCTATCGCGTCATCATCGCCAGCAGCAGTAGCACTACCACCATCACCAACATCATCATCAGCATCGATCCGTTCGTCCGACTGGCGCAGCGTGTGCGACACAACAGTGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGTAAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCATTCGTGGTTGTGTGTATCTGTGTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGTGTGCATACGTGTGTAGTGTGTTTATGTATGTATGCGGAATTTTCCACCATTAGCGTCGTGCAATTTTTTCCAGCAAAACGTACCGCGATCTCGCAATAAGGATCCTGTGGAACGAGTGCGGCTTTGTGCTTAAGTGAAATTTGTGCACGGGATTTGCTAACCCATCCGTCGAGGAACGTCAAAGTGTGCTACGAAACAGCGCGAAAGAGAGGCAGTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6954#0 CGAATGCGAAAAAAGAGGTTGGATTTCCGTCGGACGCTCGTTCGCTTTCTGCTCGAAGCT 60 consensus_6954#2 ------------------------------------------------------------ consensus_6954#1 -------------------------------------CCGCCCACGCGTCCGCCCACGCG 23 consensus_6954#0 TTGAACGCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTG 120 consensus_6954#2 ------------------------------------------------------------ consensus_6954#1 TCCG--GCAACCGTGTGTGTCTGCTAGGTGTTTGGCGTGATTCTGTGCTGAAATCGACTG 81 consensus_6954#0 AAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGTTGGTGC 180 consensus_6954#2 ------------------------------------------------------------ consensus_6954#1 AAAATCTTGTCTAAAGTCACCTCTAAAGCAAGCGTGTACTGCGTAACGGTCCGCTGGTGC 141 consensus_6954#0 AGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACCGTGGCGGTTTTAAGTAGCAAACC 240 consensus_6954#2 ------------------------------------------------------------ consensus_6954#1 AGAATAGCTACCATTCTGGTCGAAAATCGAGCGAACTGTGGCGGTTTTAAGTAGCAAACC 201 consensus_6954#0 GTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTT 300 consensus_6954#2 ------------------------------------------------------------ consensus_6954#1 GTAGTGTTCACCCGACGTCTATCGCACATCATCATCTCCCCTGGCAGACAGCCACGGCTT 261 consensus_6954#0 CTTCACGGTGTAGCAGTTGCACGGTGATTACTATCCACACGAGACGAACGTCGGGTGGCG 360 consensus_6954#2 ------------------------------------------------------------ consensus_6954#1 CTTCACGGTGTAGCAGTTGCACGGAA--------------------AACGTACCGCGATC 301 consensus_6954#0 GAGCATCGATAAGTAGTGTCCTCCCAGTGTGTTCTCACGCCGATCCGCGTTGTGAAATAC 420 consensus_6954#2 ------------------------------------------------------------ consensus_6954#1 TCGCAATAA-GGATCCTGTGGAACGAGTGCGGCTTTGTGCTTAAGTGAAATTTGTGC--- 357 consensus_6954#0 GGCAGCATCCTTTTGTGCGACGGTGAAGAATCCTCCGCTGGCGGGTGCTTCTGTGTGAAG 480 consensus_6954#2 ------------------------------------------------------------ consensus_6954#1 -ACGGGATTTGCTAACCCATCCGTCGAGGAACGTCAAAG------------TGTGCTACG 404 consensus_6954#0 TCGCCGTGTGTGAGAGAGAGAGAGCGGGAAAGAGAAAGCGTAGACACGCGAGAGGGAAAG 540 consensus_6954#2 ------------------------------------------------------------ consensus_6954#1 AAACAGCGCGAAAGAGAGGCAGTATTACCGTCAGCAAGCGTACCACCATCGCAGAGAAA- 463 consensus_6954#0 GGATCGTCTCGCAGCCGTCATCAAACAACTATTGTGTTTCGTACCGTGTTTGACGTTTAC 600 consensus_6954#2 ------------------------------------------------------------ consensus_6954#1 -------CCCGAACCTTCGATCGAACCAGACCCGGTTAATGCGAAACAAT-GGCAATTGT 515 consensus_6954#0 CGTGACTGGCAGACCGTTTTTTGGACGTCGGTCGATTGTTCCGTTGGGTTTTATGGCCAA 660 consensus_6954#2 ----------------------------------------------------CCGGCCAA 8 consensus_6954#1 CAAGGATAGTGCAACATTCTTCCAGCACGGCAACTCGGCCCAGTTCGACTACGTGCTCAA 575 * *** consensus_6954#0 AAAAAACTAGCA-GCCCGACCGCTTTTTTT--CGCCTGACGCGTTGTCCGTGAGCAGCCA 717 consensus_6954#2 GAAAAACTAGCA-GCCCGACCGCTTTTTTTTTCGCCTGACGCGTTGTCCGTGAGCAGCCA 67 consensus_6954#1 GCTGTACCCGTAAGCCCTGAAGCTGAAGGC--AGAAACGCGAGGCAATGGCAAAAAGGCA 633 ** * * **** *** * ** * * * ** ** consensus_6954#0 CATACTCTATCGCGTCATCATCGCCAGCAGCAGTA-GCACTACCACCATC-ACCAACA-T 774 consensus_6954#2 CATACTCTATCGCGTCATCATCGCCAGCAGCAGTA-GCACTACCACCATC-ACCAACA-T 124 consensus_6954#1 GATAAACTATTACGCCTCGAAAAGTGGTACCAGAACGAGCTGCCGAAGTTGATCAAAACT 693 *** **** ** * * * * *** * * ** ** * * *** * * consensus_6954#0 CATCATCATCATCAGCATCGATCCGTTCGTCCGACTGGCGCAGGTGGTGCGACACAA-CA 833 consensus_6954#2 CATCATCA------GCATCGATCCGTTCGTCCGACTGGCGCAGCGTGTGCGACACAA-CA 177 consensus_6954#1 CGTGGCCGCGATGCTCACCTG-CTGCACGAAGAGCTGGTACAGACGATGGAGTGGAAGCA 752 * * * ** * * * ** **** *** ** ** ** consensus_6954#0 G-TGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGT 892 consensus_6954#2 G-TGCGTGGAAAACAATATCAAACGGTGTACGATCAAAGTAGGCTCGGCTGAAGATTAGT 236 consensus_6954#1 GACGCGCGGCAAGTTCTACCCGCAGCTGTCCTATCGGGGCAAAATCAACACACCCCGGGC 812 * *** ** ** ** * * *** * *** * * ** * * * consensus_6954#0 AAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCA 952 consensus_6954#2 AAAAAGCTGTTAGTCGGCGCCCCCTTGCGATAATCATATTGCAGTGTTTCTGCTAAACCA 296 consensus_6954#1 GGTGGTGATGGAGACGAAGAAAGCTTTCCGGAAGC----TGCCGAACCTGGAGCAGGCAC 868 ** ** * *** * ** * *** * * * * consensus_6954#0 TTCGTGGTTGTGTGTATCTGT-GTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGT 1011 consensus_6954#2 TTCGTGGTTGTGTGTATCTGT-GTGTGTGTGCGTGTGCCAAGTCGTTGGTGTGTGTTGGT 355 consensus_6954#1 TGAATTCTCTCTCGAACCTGAAGGGTGTGGGAAT-TACGATGGCATCGGCTTTGCTGGCT 927 * * * * * *** * ***** * * * * * * * * ** * * * * consensus_6954#0 GTGCATACGT-GTGTAGTGTGTTTATGTATGTATTGTTAATTAAAAAAAAAAAAA----- 1065 consensus_6954#2 GTGCATACGT-GTGTAGTGTGTTTATGTATGTATGCGGAATTTTCCACCATTAGCGTCGT 414 consensus_6954#1 GCTGCTGCACCGGAAAGCGCGCCC-TTCATGGCTGACGAATGTCTGA------------- 973 * * * * ** * * * *** * *** * consensus_6954#0 ------------------------------------------------------------ consensus_6954#2 GCAATTTTTTCCAGCAAAACGTACCGCGATCTCGCAATAAGGATCCTGTGGAACGAGTGC 474 consensus_6954#1 ------------------------------------------------------------ consensus_6954#0 ------------------------------------------------------------ consensus_6954#2 GGCTTTGTGCTTAAGTGAAATTTGTGCACGGGATTTGCTAACCCATCCGTCGAGGAACGT 534 consensus_6954#1 ------------------------------------------------------------ consensus_6954#0 ---------------------------------------- consensus_6954#2 CAAAGTGTGCTACGAAACAGCGCGAAAGAGAGGCAGTATT 574 consensus_6954#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||