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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1075 fasta sequence
[TGGACGCGCTAAGGTTTACGAACGATGTGCGATCGGTGCTGTCCCGCAATCTACACCTTCACCGTTTGTGGTAGCAGAATTTAACTAATTTTTTATGGTGCGCTGTGAGACTTCTAAAATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGATTGTTTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTCTGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACACTTCGAGGTAATCGCTTCAAACGCGTGACGATTGTAAAGCACACCTTGGAAGGTATCCTCGCGGAAGGGAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGTATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAATGGTTAGCACCATGATAAMMATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCAACAACCACTTCCTAAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTTTTGTTATTCAATCAACTAAAGTGCGCTATGT]
[+] EMBL BX612949 [TGGACGCGCTAAGGTTTACGAACGATGTGCGATCGGTGCTGTCCCGCAATCTACACCTTCACCGTTTGTGGTAGCAGAATTTAACTAATTTTTTATGGTGCGCTGTGAGACTTCTAATATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGATTGTTTGTGTTTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTCTGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACACTTCGAGGTA ]
[+] EMBL AGA284056 [ TTTTTTTTGGGGCGCTGTGAGACTTCTAAAATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGATTGTTTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACA ]
[+] EMBL BM602017 [ ccgCTAAAATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGA TTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACAACACACCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGCGAGGGAGAGGGAGAGCGAACTCTGCTACTATT ]
[+] EMBL AGA282918 [ GGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTCTGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACACTTCGAGGTAATCGCTTCAAACGCGTGACGATTGTAAAGCACACCTTGGAAGGTATCCTCGCGGAAGGGAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGTATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAATGGTTAGCACCATGATAAMMA ]
[-] EMBL AGA285352 [ GAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGTATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAATGGTTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCAACAACCACTTCCTAAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTTTTGTTATTCAATCAACTAAAGTGCGCTATGT]
consensusID : consensus_6955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence
[CAGATCGCCCGAGGTTCACGATCAACTTCAAGCCAACTGGTTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCGACAACCACTTCCTAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTGTTATTCAATCAACTAAAGTGCGCTATGTTACGTTTATCGCTTTGTTGTGAATAAAAAAAAACGAATAAAAAACGAAAAGCTAATTCCCGATTTGACCAGGACACCGGGAAGAATTCAATTCAAAGCTAAACCAATAAGAAACATCGCGATGCATTATTGGGCAAAGCTGTAGCTGCACAGGGCGCGCGCGCGCGCTTTCTATAATCAAACATAGTTAATTTGCTACGAAAATTAGCAATCAGNACGGTTGAGTTCTGCGTT]
[+] EMBL AL696300 [CAGATCGCCCGAGGTTCACGATCAACTTCAAGCCAACTGGTTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCGACAACCACTTCCTAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTGTTATTCAATCAACTAAAGTGCGCTATGTTACGTTTATCGCTTTGTTGTGAATAAAAAAAAACGAATAAAAAACGAAAAGCTAATTCCCGATTTGACCAGGACACCGGGAAGAATTCAATTCAAAGCTAAACCAATAAGAAACATCGCGATGCATTATTGGGCAAAGCTGTAGCTGCACAGGGCGCGCGCGCGCGCTTTCTATAATCAAACATAGTTAATTTGCTACGAAAATTAGCAATCAGNACGGTTGAGTTCTGCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6955#0 TGGACGCGCTAAGGTTTACGAACGATGTGCGATCGGTGCTGTCCCGCAATCTACACCTTC 60
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 ACCGTTTGTGGTAGCAGAATTTAACTAATTTTTTATGGTGCGCTGTGAGACTTCTAAAAT 120
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 CTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGG 180
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 ATTGTTTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAA 240
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 GCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCA 300
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 CAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCT 360
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 CCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGA 420
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 CAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGG 480
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 GGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACT 540
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 GCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTC 600
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 TGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACA 660
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 CTTCGAGGTAATCGCTTCAAACGCGTGACGATTGTAAAGCACACCTTGGAAGGTATCCTC 720
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 GCGGAAGGGAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGT 780
consensus_6955#1 ------------------------------------------------------------
consensus_6955#0 ATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAA-TGG 839
consensus_6955#1 ------------------CAGATCGCCCGAGGTTCA--CGATCAACTTCAAGCCAACTGG 40
** * *** ****************** ***
consensus_6955#0 TTAGCACCATGATAAMMATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCAACAACCA 899
consensus_6955#1 TTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCGACAACCA 100
*************** *********************************** *******
consensus_6955#0 CTTCCTAAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTT 959
consensus_6955#1 CTTCCTAAA-CCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTT 159
********* **************************************************
consensus_6955#0 TTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGAT 1019
consensus_6955#1 TTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGAT 219
************************************************************
consensus_6955#0 TATTTGTACGAGGCTCTCCTTTTTTTTGTTATTCAATCAACTAAAGTGCGCTATGT---- 1075
consensus_6955#1 TATTTGTACGAGGCTCTCCTTTT---TGTTATTCAATCAACTAAAGTGCGCTATGTTACG 276
*********************** ******************************
consensus_6955#0 ------------------------------------------------------------
consensus_6955#1 TTTATCGCTTTGTTGTGAATAAAAAAAAACGAATAAAAAACGAAAAGCTAATTCCCGATT 336
consensus_6955#0 ------------------------------------------------------------
consensus_6955#1 TGACCAGGACACCGGGAAGAATTCAATTCAAAGCTAAACCAATAAGAAACATCGCGATGC 396
consensus_6955#0 ------------------------------------------------------------
consensus_6955#1 ATTATTGGGCAAAGCTGTAGCTGCACAGGGCGCGCGCGCGCGCTTTCTATAATCAAACAT 456
consensus_6955#0 -------------------------------------------------
consensus_6955#1 AGTTAATTTGCTACGAAAATTAGCAATCAGNACGGTTGAGTTCTGCGTT 505
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||