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Anopheles gambiae
cluster # 6955 cluster # 6955       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6955#0 length = 1075 sequences # 5  
consensus_6955#1 length = 505 sequences # 1  

consensusID : consensus_6955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1075
fasta sequence
                              [TGGACGCGCTAAGGTTTACGAACGATGTGCGATCGGTGCTGTCCCGCAATCTACACCTTCACCGTTTGTGGTAGCAGAATTTAACTAATTTTTTATGGTGCGCTGTGAGACTTCTAAAATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGATTGTTTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTCTGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACACTTCGAGGTAATCGCTTCAAACGCGTGACGATTGTAAAGCACACCTTGGAAGGTATCCTCGCGGAAGGGAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGTATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAATGGTTAGCACCATGATAAMMATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCAACAACCACTTCCTAAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTTTTGTTATTCAATCAACTAAAGTGCGCTATGT]

[+] EMBL BX612949             [TGGACGCGCTAAGGTTTACGAACGATGTGCGATCGGTGCTGTCCCGCAATCTACACCTTCACCGTTTGTGGTAGCAGAATTTAACTAATTTTTTATGGTGCGCTGTGAGACTTCTAATATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGATTGTTTGTGTTTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTCTGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACACTTCGAGGTA                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AGA284056            [                                                                                        TTTTTTTTGGGGCGCTGTGAGACTTCTAAAATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGATTGTTTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM602017             [                                                                                                              ccgCTAAAATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGA    TTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACAACACACCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGCGAGGGAGAGGGAGAGCGAACTCTGCTACTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AGA282918            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTCTGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACACTTCGAGGTAATCGCTTCAAACGCGTGACGATTGTAAAGCACACCTTGGAAGGTATCCTCGCGGAAGGGAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGTATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAATGGTTAGCACCATGATAAMMA                                                                                                                                                                                                                          ]
[-] EMBL AGA285352            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGTATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAATGGTTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCAACAACCACTTCCTAAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTTTTGTTATTCAATCAACTAAAGTGCGCTATGT]


>consensus_6955#0 TGGACGCGCTAAGGTTTACGAACGATGTGCGATCGGTGCTGTCCCGCAATCTACACCTTC ACCGTTTGTGGTAGCAGAATTTAACTAATTTTTTATGGTGCGCTGTGAGACTTCTAAAAT CTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGG ATTGTTTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAA GCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCA CAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCT CCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGA CAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGG GGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACT GCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTC TGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACA CTTCGAGGTAATCGCTTCAAACGCGTGACGATTGTAAAGCACACCTTGGAAGGTATCCTC GCGGAAGGGAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGT ATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAATGGT TAGCACCATGATAAMMATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCAACAACCAC TTCCTAAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTT TTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATT ATTTGTACGAGGCTCTCCTTTTTTTTGTTATTCAATCAACTAAAGTGCGCTATGT



consensusID : consensus_6955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence
                              [CAGATCGCCCGAGGTTCACGATCAACTTCAAGCCAACTGGTTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCGACAACCACTTCCTAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTGTTATTCAATCAACTAAAGTGCGCTATGTTACGTTTATCGCTTTGTTGTGAATAAAAAAAAACGAATAAAAAACGAAAAGCTAATTCCCGATTTGACCAGGACACCGGGAAGAATTCAATTCAAAGCTAAACCAATAAGAAACATCGCGATGCATTATTGGGCAAAGCTGTAGCTGCACAGGGCGCGCGCGCGCGCTTTCTATAATCAAACATAGTTAATTTGCTACGAAAATTAGCAATCAGNACGGTTGAGTTCTGCGTT]

[+] EMBL AL696300             [CAGATCGCCCGAGGTTCACGATCAACTTCAAGCCAACTGGTTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCGACAACCACTTCCTAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTGTTATTCAATCAACTAAAGTGCGCTATGTTACGTTTATCGCTTTGTTGTGAATAAAAAAAAACGAATAAAAAACGAAAAGCTAATTCCCGATTTGACCAGGACACCGGGAAGAATTCAATTCAAAGCTAAACCAATAAGAAACATCGCGATGCATTATTGGGCAAAGCTGTAGCTGCACAGGGCGCGCGCGCGCGCTTTCTATAATCAAACATAGTTAATTTGCTACGAAAATTAGCAATCAGNACGGTTGAGTTCTGCGTT]


>consensus_6955#1 CAGATCGCCCGAGGTTCACGATCAACTTCAAGCCAACTGGTTAGCACCATGATAACCATT TGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCGACAACCACTTCCTAAACCGCGGCGGAG AGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTA AAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTT TTTGTTATTCAATCAACTAAAGTGCGCTATGTTACGTTTATCGCTTTGTTGTGAATAAAA AAAAACGAATAAAAAACGAAAAGCTAATTCCCGATTTGACCAGGACACCGGGAAGAATTC AATTCAAAGCTAAACCAATAAGAAACATCGCGATGCATTATTGGGCAAAGCTGTAGCTGC ACAGGGCGCGCGCGCGCGCTTTCTATAATCAAACATAGTTAATTTGCTACGAAAATTAGC AATCAGNACGGTTGAGTTCTGCGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6955#0      TGGACGCGCTAAGGTTTACGAACGATGTGCGATCGGTGCTGTCCCGCAATCTACACCTTC 60
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      ACCGTTTGTGGTAGCAGAATTTAACTAATTTTTTATGGTGCGCTGTGAGACTTCTAAAAT 120
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      CTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGG 180
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      ATTGTTTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAA 240
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      GCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCA 300
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      CAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCT 360
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      CCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGA 420
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      CAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGG 480
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      GGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACT 540
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      GCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTC 600
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      TGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACA 660
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      CTTCGAGGTAATCGCTTCAAACGCGTGACGATTGTAAAGCACACCTTGGAAGGTATCCTC 720
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      GCGGAAGGGAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGT 780
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      ATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAA-TGG 839
consensus_6955#1      ------------------CAGATCGCCCGAGGTTCA--CGATCAACTTCAAGCCAACTGG 40
                                           **      *   ***  ****************** ***

consensus_6955#0      TTAGCACCATGATAAMMATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCAACAACCA 899
consensus_6955#1      TTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCGACAACCA 100
                      ***************  *********************************** *******

consensus_6955#0      CTTCCTAAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTT 959
consensus_6955#1      CTTCCTAAA-CCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTT 159
                      ********* **************************************************

consensus_6955#0      TTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGAT 1019
consensus_6955#1      TTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGAT 219
                      ************************************************************

consensus_6955#0      TATTTGTACGAGGCTCTCCTTTTTTTTGTTATTCAATCAACTAAAGTGCGCTATGT---- 1075
consensus_6955#1      TATTTGTACGAGGCTCTCCTTTT---TGTTATTCAATCAACTAAAGTGCGCTATGTTACG 276
                      ***********************   ******************************    

consensus_6955#0      ------------------------------------------------------------
consensus_6955#1      TTTATCGCTTTGTTGTGAATAAAAAAAAACGAATAAAAAACGAAAAGCTAATTCCCGATT 336
                                                                                  

consensus_6955#0      ------------------------------------------------------------
consensus_6955#1      TGACCAGGACACCGGGAAGAATTCAATTCAAAGCTAAACCAATAAGAAACATCGCGATGC 396
                                                                                  

consensus_6955#0      ------------------------------------------------------------
consensus_6955#1      ATTATTGGGCAAAGCTGTAGCTGCACAGGGCGCGCGCGCGCGCTTTCTATAATCAAACAT 456
                                                                                  

consensus_6955#0      -------------------------------------------------
consensus_6955#1      AGTTAATTTGCTACGAAAATTAGCAATCAGNACGGTTGAGTTCTGCGTT 505
                                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)