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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1469 fasta sequence
[ATGTAACCCAATAATTTATTAAAACACAGTAGCTACTAGTTTTTAGAATCCTCGATTATGAAGTCTCCGCTCGTTCGCTTTCCGGATACACTTTTCGCTGCAAAAAACACTGTCCGCGATGAGAAGATGGTTGGCGTTGAGCACCAAGCAGGAACAGCGCCCATTGATCACTTTCGTGCGCTGGTACACTTTCGCATCGAAACACGGTTGGCCACAGCCGCAAAGAGGCACACGGCGTATAATGTCCACCACGGTGAACGGCAACAGTCCTGGCATTGCGTATGGAAGCTTCCTATGGATCACGGTACGGCGGCGAGTTCGAACAGGGTCGACGGTTGCCGCTGCTGCATCGAAGGACTCGGGTGTAGCTCAGCCATTCCTCCGTCGGGTGAAAGATTATTTTCCGACAGATCTAACCGCTCCAGTCTTATTCGTTCCAAGGTTTCCGGTACACCATCGATCTGGTTTTTGGCCAACGAAAGCACCCGAAGCCGACTCATAGTCCACAGCGCAAAGGGTAGCTTGCGGATGTGGTTGTTGTTCGCTGTTAGTGCCACCAGTGCGCCAGCGTTTATCACATTGATCGGTAAGAACGAGAGCCCGTTGTCGGAAATGTTGAGACTCTGCAGCGACGACTGAATGTTCGGTTCCAGTAGCCAGTCAAAGGTGCAGTCGGCCAATCTGTTGCTCGACAGCTCCAGCTCGCTCAGCCGTAGCTGGCCAAGTGCGCGGGGCAAGCTGCGTAAACAGTTGTTGGACAGATTTAAAAATCGAAGCTTCTGTAGCAACAATATCTGTGAGTCGAATCGTGAAAGCTTCACGTCGGTAATCTGCAACGACACGAGCAAGCGGGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGTTATCACGCACTTGGTCGCCAGGACACTCGGAGAATCGAGAATGGAGGCTTTTTTCTTCCCCACGGTAAGACACGGTAGTCGCAGTGGAGCGGACGGTGAGAAGGGGTTCGTGACGGGCTGGGTCCCTTCCGCCGGTTGTCCGCTTCCCGTGAGCACCAGCTTTAGCACCTTCAGGAACGCCGTCAGCTGAACTTTATCACTTTTAATCTGCACATCGTGCTCGGGTGTGACGAACGAAATCGTGGCCTTTCCTTCCTCCAGAAAGCGGGTAAATATCTTGCTTATGTTCTTTAGGACGCTGTACTTGGTGCCGGCCTTGTTGGCGGTCGTAATGAGCATGATCTTCGTTTCATCTCCCTTCCGCTCGGATCCCTTCCCGATGGCAAGGATCGTTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGATTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATTTTGCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGGATGGGACTGATTTCGCGCCAAGGGAAAACTGACA]
[+] EMBL CNS08GU7 [ATGTAACCCAATAATTTATTAAAACACAGTAGCTACTAGTTTTTAGAATCCTCGATTATGAAGTCTCCGCTCGTTCGCTTTCCGGATACACTTTTCGCTGCAAAAAACACTGTCCGCGATGAGAAGATGGTTGGCGTTGAGCACCAAGCAGGAACAGCGCCCATTGATCACTTTCGTGCGCTGGTACACTTTCGCATCGAAACACGGTTGGCCACAGCCGCAAAGAGGCACACGGCGTATAATGTCCACCACGGTGAACGGCAACAGTCCTGGCATTGCGTATGGAAGCTTCCTATGGATCACGGTACGGCGGCGAGTTCGAACAGGGTCGACGGTTGCCGCTGCTGCATCGAAGGACTCGGGTGTAGCTCAGCCATTCCTCCGTCGGGTGAAAGATTATTTTCCGACAGATCTAACCGCTCCAGTCTTATTCGTTCCAAGGTTTCCGGTACACCATCGATCTGGTTTTTGGCCAACGAAAGCACCCGAAGCCGACTCATAGTCCACAGCGCAAAGGGTAGCTTGCGGATGTGGTTGTTGTTCGCTGTTAGTGCCACCAGTGCGCCAGCGTTTATCACATTGATCGGTAAGAACGAGAGCCCGTTGTCGGAAATGTTGAGACTCTGCAGCGACGACTGAATGTTCGGTTCCAGTAGCCAGTCAAAGGTGCAGTCGGCCAATCTGTTGCTCGACAGCTCCAGCTCGCTCAGCCGTAGCTGGCCAAGTGCGCGGGGCAAGCTGCGTAAACAGTTGTTGGACAGATTTAAAAATCGAAGCTTCTGTAGCAACAATATCTGTGAGTCGAATCGTGAAAGCTTCACGTCGGTAATCTGCAACGACACGAGCAAGCGGGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGTTATCACGCACTTGGTCGCCAGGACACTCGGAGAATCGAGAATGGAcg ]
[-] EMBL CNS08GU6 [ GTGCCACCAGTGCGCCAGCGTTTATCACATTGATCGGTAAGAACGAGAGCCCGTTGTCGGAAATGTTGAGACTCTGCAGCGACGACTGAATGTTCGGTTCCAGTAGCCAGTCAAAGGTGCAGTCGGCCAATCTGTTGCTCGACAGCTCCAGCTCGCTCAGCCGTAGCTGGCCAAGTGCGCGGGGCAAGCTGCGTAAACAGTTGTTGGACAGATTTAAAAATCGAAGCTTCTGTAGCAACAATATCTGTGAGTCGAATCGTGAAAGCTTCACGTCGGTAATCTGCAACGACACGAGCAAGCGGGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGTTATCACGCACTTGGTCGCCAGGACACTCGGAGAATCGAGAATGGAGGCTTTTTTCTTCCCCACGGTAAGACACGGTAGTCGCAGTGGAGCGGACGGTGAGAAGGGGTTCGTGACGGGCTGGGTCCCTTCCGCCGGTTGTCCGCTTCCCGTGAGCACCAGCTTTAGCACCTTCAGGAACGCCGTCAGCTGAACTTTATCACTTTTAATCTGCACATCGTGCTCGGGTGTGACGAACGAAATCGTGGCCTTTCCTTCCTCCAGAAAGCGGGTAAATATCTTGCTTATGTTCTTTAGGACGCTGTACTTGGTGCCGGCCTTGTTGGCGGTCGTAATGAGCATGATCTTCGTTTCATCTCCCTTCCGCTCGGATCCCTTCCCGATGGCAAGGATCGTTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGATTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATTTTGCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGGATGGGACTGATTTCGCGCCAAGGGAAAACTGACA]
[-] EMBL BM582636 [ TTTATCACATTGATCGGTAAGAACGAGAGCCCGTTGTCGGAAATGTTGAGACTCTGCAGCGACGACTGAATGTTCGGTTCCAGTAGCCAGTCCCAGGTGCAGTCGGCCAATCTGTTGCTCGACAGATCCAGCTCGCTCAGCCGTAGCTGGCCAAGGGCGCGGGGCAAGATGCGTAAACAGTTGTTGGACAGGTTTAAAAATCGAAGCTTCTGTAGCAACAATATCTGTGAGTCAAATCGTGAAAGCTTCACGTCGGTAATCTGCAATGACACGAGCAGGCGTGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGATATCACGCACTTGGTCGCCAGGACACTCGGAGAATCGAGAATGGAGGCTTTTTTCTTCCCCACGGTAAGACACGGCAGTCGGAGTGGAGCCGATGGTGAAAAGGGGTTCGTGACGGACTGGGTCCCTTCCGTCGGTTGTCCGCAACCCGTGAGCACCAGCTTTAGCACCTTCAGGAACGCCGTCAGCTGAACTTTATCACTTTTAATCTGCACATCGTGCTCGGGTGTGACGAACGAAATCGTGGCCTTTCCTTCCTCCAGAAAGCGGGTAAATATCTTGCTTATGTTCTTTAGGACGCTGTACTTGGTGCCGGCCTTGTTGGCGGTCGTAATGAGCATGATCTTCGTTTCATCTCCCTTCCGCTCGcgg ]
[-] EMBL BX628546 [ CCAGCTCGCTCAGCCGTAGCTGGCCAAGTGCGCGGGGCAAGCTGCGTAAACAGTTGTTGGACAGATTTAAAAATCGAAGCTTCTGTAGCAACAATATCTGTGAGTCGAATCGTGAAAGCTTCACGTCGGTAATCTGCAACGACACGAGCAAGCGGGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGTTATCACGCACTTGGTCGCCAGGACACTCGGAGAATCGAGAATGGAGGCTTTTTTCTTCCCCACGGTAAGACACGGTAGTCGCAGTGGAGCGGACGGTGAGAAGGGGTTCGTGACGGGCTGGGTCCCTTCCGCCGGTTGTCCGCTTCCCGTGAGCACCAGCTTTAGCACCTTCAGGAACGCCGTCAGCTGAACTTTATCACTTTTAATCTGCACATCGTGCTCGGGTGTGACGAACGAAATCGTGGCCTTTCCTTCCTCCAGAAAGCGGGTAAATATCTTGCTTATGTTCTTTAGGACGCTGTACTTGGTGCCGGCCTTGTTGGCGGTCGTAATGAGCATGATCTTCGTTTCATCTCCCTTCCGCTCGGATCCCTTCCCGATGGCAAGGATCGTTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGATTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATT ]
[-] EMBL BM586500 [ TCGAGAATGGAGACTTTTTTCTTCCCCACGGTAAGACACGGCAGTCGGAGTGGAGCCGATGGTGAAAAGGGGTTCGTGACGGACTGGGTCCCTTCCACCTGTTGTCCGCTTCCCGTGAGCACCAGCTTTAGCACCTTCAGGAACGCCGTCAGCTGAACTTTATCACTTTTcgg ]
consensusID : consensus_6956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[GNGTGAGAACGGNGTTTCGTGACCGGCCTGGGTCCNTTCCGCCGGTTGTCCGCTTCCCTGTGAGCACCAGCTTTAGCACCTTCAAGGAACGCCGTNAGCTGAACTTGAAACGTCACCTGTGTAAATCCGTGCACAATTCGGTGCNTTCCGGGGTCGTTGACCGAACCGGAATATTCGTTGCGCCCTTCTCCTTCCTTCCCAGAAAAGCCGGTTAAAATATCCTCGGCTNATGTTCCTTTAGGACCGCTGTACTTGGTGCCGGCCTTGTTGCGCGTCGTAATGAGCATGATCCTTCGTTTCATCTCCCTTCCGCTCGGGATCCCTTCCCGATGGCAAGGATCGTTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGATTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATTTGCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGCACTCGTGCGGATTCTTGC]
[-] EMBL BX468449 [GNGTGAGAACGGNGTTTCGTGACCGGCCTGGGTCCNTTCCGCCGGTTGTCCGCTTCCCTGTGAGCACCAGCTTTAGCACCTTCAAGGAACGCCGTNAGCTGAACTTGAAACGTCACCTGTGTAAATCCGTGCACAATTCGGTGCNTTCCGGGGTCGTTGACCGAACCGGAATATTCGTTGCGCCCTTCTCCTTCCTTCCCAGAAAAGCCGGTTAAAATATCCTCGGCTNATGTTCCTTTAGGACCGCTGTACTTGGTGCCGGCCTTGTTGCGCGTCGTAATGAGCATGATCCTTCGTTTCATCTCCCTTCCGCTCGGGATCCCTTCCCGATGGCAAGGATCGTTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGATTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATTTGCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGCACTCGTGCGGATTCTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6956#0 ATGTAACCCAATAATTTATTAAAACACAGTAGCTACTAGTTTTTAGAATCCTCGATTATG 60
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 AAGTCTCCGCTCGTTCGCTTTCCGGATACACTTTTCGCTGCAAAAAACACTGTCCGCGAT 120
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 GAGAAGATGGTTGGCGTTGAGCACCAAGCAGGAACAGCGCCCATTGATCACTTTCGTGCG 180
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 CTGGTACACTTTCGCATCGAAACACGGTTGGCCACAGCCGCAAAGAGGCACACGGCGTAT 240
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 AATGTCCACCACGGTGAACGGCAACAGTCCTGGCATTGCGTATGGAAGCTTCCTATGGAT 300
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 CACGGTACGGCGGCGAGTTCGAACAGGGTCGACGGTTGCCGCTGCTGCATCGAAGGACTC 360
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 GGGTGTAGCTCAGCCATTCCTCCGTCGGGTGAAAGATTATTTTCCGACAGATCTAACCGC 420
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 TCCAGTCTTATTCGTTCCAAGGTTTCCGGTACACCATCGATCTGGTTTTTGGCCAACGAA 480
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 AGCACCCGAAGCCGACTCATAGTCCACAGCGCAAAGGGTAGCTTGCGGATGTGGTTGTTG 540
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 TTCGCTGTTAGTGCCACCAGTGCGCCAGCGTTTATCACATTGATCGGTAAGAACGAGAGC 600
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 CCGTTGTCGGAAATGTTGAGACTCTGCAGCGACGACTGAATGTTCGGTTCCAGTAGCCAG 660
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 TCAAAGGTGCAGTCGGCCAATCTGTTGCTCGACAGCTCCAGCTCGCTCAGCCGTAGCTGG 720
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 CCAAGTGCGCGGGGCAAGCTGCGTAAACAGTTGTTGGACAGATTTAAAAATCGAAGCTTC 780
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 TGTAGCAACAATATCTGTGAGTCGAATCGTGAAAGCTTCACGTCGGTAATCTGCAACGAC 840
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 ACGAGCAAGCGGGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGTTATCACGCACTTG 900
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 GTCGCCAGGACACTCGGAGAATCGAGAATGGAGGCTTTTTTCTTCCCCACGGTAAGACAC 960
consensus_6956#1 ------------------------------------------------------------
consensus_6956#0 GGTAGTCGCAGTGGAGCGGACGGTGAGAAGGGGTTCGTGACGGGC-TGGGTCCCTTCCGC 1019
consensus_6956#1 ------------------GNGTGAGAACGGNGTTTCGTGACCGGCCTGGGTCCNTTCCGC 42
* * ** * * ******** *** ******* ******
consensus_6956#0 CGGTTGTCCGCTTCCC-GTGAGCACCAGCTTTAGCACCTTCA-GGAACGCCGTCAGCTGA 1077
consensus_6956#1 CGGTTGTCCGCTTCCCTGTGAGCACCAGCTTTAGCACCTTCAAGGAACGCCGTNAGCTGA 102
**************** ************************* ********** ******
consensus_6956#0 ACTTTA----TCACTTTT---AATCTGCACAT-------CGTGCTCGGGTGT-GACGAAC 1122
consensus_6956#1 ACTTGAAACGTCACCTGTGTAAATCCGTGCACAATTCGGTGCNTTCCGGGGTCGTTGACC 162
**** * **** * * **** * ** * ** ** ** * ** *
consensus_6956#0 GAA-----------ATCGTGGCCTT-TCCTTCCTCC---AGAAAGCGGGT--AAATATCT 1165
consensus_6956#1 GAACCGGAATATTCGTTGCGCCCTTCTCCTTCCTTCCCAGAAAAGCCGGTTAAAATATCC 222
*** * * * **** ******** * ***** *** *******
consensus_6956#0 T--GCTTATGTTC-TTTAGGAC-GCTGTACTTGGTGCCGGCCTTGTTGGCGGTCGTAATG 1221
consensus_6956#1 TCGGCTNATGTTCCTTTAGGACCGCTGTACTTGGTGCCGGCCTTGTTGCGCGTCGTAATG 282
* *** ****** ******** ************************* *********
consensus_6956#0 AGCATGATC-TTCGTTTCATCTCCCTTCCGCTCGG-ATCCCTTCCCGATGGCAAGGATCG 1279
consensus_6956#1 AGCATGATCCTTCGTTTCATCTCCCTTCCGCTCGGGATCCCTTCCCGATGGCAAGGATCG 342
********* ************************* ************************
consensus_6956#0 TTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGA 1339
consensus_6956#1 TTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGA 402
************************************************************
consensus_6956#0 TTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATT 1399
consensus_6956#1 TTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATT 462
************************************************************
consensus_6956#0 TTGCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGGATGGGACTGATTTCGCGCCAAGGG 1459
consensus_6956#1 T-GCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGCACTCGTGCGGATTCTTGC------ 515
* ********************************* * * * *** **
consensus_6956#0 AAAACTGACA 1469
consensus_6956#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||