These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1157 fasta sequence [ATGCCGGGACTGTTGGGCCTCCGGGGCGGCGGAACTGGTGCACTTATTAGTTAAACCAATCGCCTCCGGGCGCTTTTAGTTTAAATCTGGATAAGGATGCCGATCGTACGGTCGCTTTCGACTTACGACAGATCTTTCAAATGTCTGCCCTATCAACTATTGATGGTAGTGTAGAGGACTACCATGGTTGCGACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCAAGGAAAGCAGCAGGCGCGTAAATTACCCAATCCCGGCACGGGGAGGTAGTGACGAGAAATAACAATATGGACCTCTCTAACGATGGTCCATAATTGGAATGAGTTGAGCATAAATCCCTTTGCAAGGATCAAGTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACTAGCGTATATTAAAGTTGTTGCGGTTAAAACGTTCGAAGTTGATACCCCGTCCAGACTCGCGTCCCTTTTCGCTAAAGTGCGTTCGCGAGACGTGTTGCGACTTCGGATTTAGTCTGCAAATAAAGAACGATCCCAAGATGAGTACTGCAACGATTCGTACCCGTCGCTACATGAGCAACCGGCTGCTGTGCCGCAAGCAGATGGAAAGCGACGTCCTCCACCCTGGCCTCGCCTCGGTCTCGAAGAAGGAGATCCGCGAGAAGCTCGCCGTCATGTACAAAACCACGCCGGACGTCGTGTTCGTGTTCGGTTTCCGCACGAACTTCGGTGGCGGCAAGTCGACCGGTTTCGCCCTCATCTACGACACCCTGGACCACGCCAAGAAGTTCGAGCCCAAGCACCGTCTCGGCCGCCACGGACTGTACGAGAAGAAGAAGATGACGCGCAA-CAGCGCAAGGAGCGCAAGAACCGTATGAAGAAGGTGCGCGG-ACGAAGAAGGCCAAGGTCGGACAGGCCGTCAAGAAGTAAAACGGCGGAACGGTGATGGTGCCGTAGCTGCTGCTGCTGCTGCCACGGTTGTTGTCGCAGTAGAAGTGGTGGCCGCGTGTCCTCAGGCGGTCCGTGTTTTAAGTTTATATGTTTTCTCTTGTGCGGAAAAATGGAAAACATTCCGCTCAAAAGGAATGAGAATATAAGCAACAATACCATGTAAGGTATCCCG] [+] EMBL CNS09C7S [ATGCCGGGACTGTTGGGCCTCCGGGGCGGCGGAACTGGTGCACTTATTAGTTAAACCAATCGCCTCCGGGCGCTTTTAGTTTAAATCTGGATAAGGATGCCGATCGTACGGTCGCTTTCGACTTACGACAGATCTTTCAAATGTCTGCCCTATCAAC ] [+] EMBL CNS092R5 [ gTTGAACCCGGATAAGGATGCCGATCGTACGGTCGCTTGCGACTGACGACAGATCTTTCAAATGTCTGCCCTATCAACTATTGATGGTAGTGTAGAGGACTACCATGGTTGCGACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCAAGGAAAGCAGCAGGCGCGTAAATTACCCAATCCCGGCACGGGGAGGTAGTGACGAGAAATAACAATATGGACCTCTCTAACGATGGTCCATAATTGGAATGAGTTGAGCATAAATCCCTTTGCAAGGATCAAGTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACTAGCGTATATTAAAGTTGTTGCGGTTAAAACGTTCGAAGTTGATACCCCGTCCAGACTCGCGTCCCTTTTCGCTAAAGTGCGTTCGCGAGACGTGTTGCGACTTCGGATTTAGTCTGCAAATAAAGAACGATCCCAAGATGAGTACTGCAACGATTCGTACCCGTCGCTACATGAGCAACCGGCTGCTGTGCCGCAAGCAGATGGAAAGCGACGTCCTCCACCCTGGCCTCGCCTCGGTCTCGAAGAAGGAGATCCGCGAGAAGCTCGCCGTCATGTACAAAACCACGCCGGACGTCGTGTTCGTGTTCGGTTTCCGCACGAACTTCGGTGGCGGCAAGTCGACCGGTTTCGCCCTCATCTACGACACCCTGGACCACGCCAAGAAGTTCGAGCCCAAGCACCGTCTCGGCCGCCACGGACTGTACGAGAAGAAGAAGATGACGCGCAA CAGCGCAAGGAGCGCAAGAACCGTATGAAGAAGGTGCGCGG ACGAAGAAGGCCAAGGTCGGACAGGCCGTCAAGAAGTAAAACGGCGGAACGGTGATGGTGCCGTAGCTGCTGCTGC ] [-] EMBL CNS092R6 [ ATAACAATATGGACCTCTCTAACGATGGTCCATAATTGGAATGAGTTGAGCATAAATCCCTTTGCAAGGATCAAGTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACTAGCGTATATTAAAGTTGTTGCGGTTAAAACGTTCGAAGTTGATACCCCGTCCAAACTCGCGTCCCTTTTCGCTAAAGTGCGTTCGCGAGACGTGTTGCGACTTCGGATTTAGTCTGCAAATAAAGAACGATCCCAAGATGAGTACTGCAACGATTCGTACTCGTCGCTACATGAGCAACCGGCTGCTGTGCCGCAAGCAGAT GTCTGCGACGTCCTCCACCCTGGCCTCGCCTCGGTCTCGAAGAAGGAGATCCGCGAGAAGCTCGCCGTCATGTAAAAAACCACGCCGGACGTCGTGTTCGTGTTCGGTTTCCGCACGAACTTCGGTGGCGGCAAGTCGACCGGTTTCGCCCTCATCTACGACACCCTGGACCACGCCAAGAAGTTCGAGCCCAAGCACCGTCTCGGCCGCCACGGACTGTACGAGAAGAAGAAGATGACGCGCAAGCAGCGCAAGGAGCGCAAGAACCGTATGAAGAAGGTGCGCGGCACGAAGAAGGCCAAGGTCGGACAGGCCGTCAAGAAGTAAAACGGCGGAATGGTGATGGTGCCGTAGCTGCTGCTGCTGCTGCCACGGTTGTTGTCGCAGTAGAAGTGGTGGCCGCGTGTCCTCAGGCGGTCCGTGTTTTAAGTTTATATGTTTTCTCTTGTGCGGAAAAATGGAAAACATTCCGCTCAAAAGGAATGAGAATATAAGCAACAATACCATGTAAGGTATCCCG] consensusID : consensus_6963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCATCCGGAAAATTCACTATTTTGGCTCGTCAACTGAGCACCAGCTCGGCCGCCGCTCAGCTGGTCAAGCCACCGGTGCAGGTCTTCGGACTGGAGGGCCGCTATGCCTGTGCGCTCTATTCCGCTGCCTCCAAGACCAAGGCGCTCGATGCGGTCGAGAAGGATCTGAAGGGGCTGCAGAGCCAGATGCGCTCGGATCCGAAGATGCGCGATCTGCTGCGTGACCCGACGACGAAGCGCAACGTAAAGGCCGCCGCACTGAAGGATGTCGCCGCTAAGGTGAAGTTCAACGCTGCCACCGGCAATCTGCTCACCCTGCTGGCGGAGAACGGTCGCCTCGGCCGTCTGGACGGTATCATCAACGCGTACAGCCTGATCATGGCTGCCGAGCGGGGCGAGGTCGTGTGTGAGGTGAAGACTGCCAAACCGCTGGATGATGGCCAGCGCAAGCAGCTGGAAAATGCTCTCAAGGCATTCCTTAAGCCGAACCAAACGATCCAGCTGACGGCTAAGGTTGACCCGGCACTTATTGGCGGCATGGTTGTTTCGATCGGTGATAAGTACGTCGACATGAGCGTTGCCAGCAAAATCAAGAAGTACACCGACGTCATTACGGCGCCCGTCTAAAATGTAAGCAAAATCATCTAC] [+] EMBL BM627153 [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCATCCGGAAAATTCACTATTTTGGCTCGTCAACTGAGCACCAGCTCGGCCGCCGCTCAGCTGGTCAAGCCACCGGTGCAGGTCTTCGGACTGGAGGGCCGCTATGCCTGTGCGCTCTATTCCGCTGCCTCCAAGACCAAGGCGCTCGATGCGGTCGAGAAGGATCTGAAGGGGCTGCAGAGCCAGATGCGCTCGGATCCGAAGATGCGCGATCTGCTGCGTGACCCGACGACGAAGCGCAACGTAAAGGCCGCCGCACTGAAGGATGTCGCCGCTAAGGTGAAGTTCAACGCTGCCACCGGCAATCTGCTCACCCTGCTGGCGGAGAACGGTCGCCTCGGCCGTCTGGACGGTATCATCAACGCGTACAGCCTGATCATGGCTGCCGAGCGGGGCGAGGTCGTGTGTGAGGTGAAGACTGCCAAACCGCTGGATGATGGCCAGCGCAAGCAGCTGGAAAATGCTCTCAAGGCATTCCTTAAGCCGAACCAAACGATCCAGCTGACGGCTAAGGTTGACCCGGCACTTATTGGCGGCATGGTTGTTTCGATCGGTGATAAGTACGTCGACATGAGCGTTGCCAGCAAAATCAAGAAGTACACCGACGTCATTACGGCGCCCGTCTAAAATGTAAGCAAAATCATCTAC] [+] EMBL BM575064 [ CCGCCCACGCGTCCG GCATCCGGAAAATTCACTATTTTGGCTCGTCAACTGAGCACCAGCTCGGCCGCCGCTCAGCTGGTCAAGCCACCGGTGCAGGTCTTCGGACTGGAGGGCCGCTATGCCTGTGCGCTCTATTCCGCTGCCTCCAAGACCAAGGCGCTCGATGCGGTCGAGAAGGATCTGAAGGGGCTGCAGAGCCAGATGCGCTCGGATCCGAAGATGCGCGATCTGCTGCGTGACCCGACGACGAAGCGCAACGTAAAGGCCGCCGCACTGAAGGATGTCGCCGCTAAGGTGAAGTTCAACGCTGCCACCGGCAATCTGCTCACCCTGCTGGCGGAGAACGGTCGCCTCGGCCGTCTGGACGGTATCATCAACGCGTACAGCCTGATCATGGCTGCCGAGCGGGGCGAGGTCGTGTGTGAGGTGAAGACTGCCAAACCGCTGGATGATGGCCAGCGCAAGCAGCTGGAAAATGCTCTCAAGGCATTCCTTAAGCCGAACCAAACGATCCAGCTGACGG ] consensusID : consensus_6963#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [CCGCGAAAAGGCACACTTTTTCACATCGTTTCCCCGTCGCGTGCAAAAGCATCCACACCAATGGCGTCGCTGTGCGGAAGAATTGTGCTGGCTGCGGCCAAGCGAAACGTGACCTACACGCCCGTTCGATTTTGCAAAATGATGAACGACCCGATCGAGCATGCCACCGGTATCGAGAAGCGTGAGCTGCTGGCGAAGCAGGCAGGCAACCCAGATCCGTTCGATATGCGTGTGTTCAAGCGCGGACCGGGCACCAAGGATAGCCCGAACCTGATTCCATCGGCATTCGATGCTCGTCTAGTCGGCTGTGTTTGCGAGGAAGACCAGACCTATGTCCAGTGGATGTGGCTGCACCAGGGCCAGCCGAAGCGTTGCGAATGCGGACACTGGTTCAAACTGGTCGAGAAGGCTCCAGTCTAAACGGTGGCATACCATCCCACACCTCTTGCTCTGTATCTTA] [+] EMBL BM645940 [CCGCGAAAAGGCACACTTTTTCACATCGTTTCCCCGTCGCGTGCAAAAGCATCCACACCAATGGCGTCGCTGTGCGGAAGAATTGTGCTGGCTGCGGCCAAGCGAAACGTGACCTACACGCCCGTTCGATTTTGCAAAATGATGAACGACCCGATCGAGCATGCCACCGGTATCGAGAAGCGTGAGCTGCTGGCGAAGCAGGCAGGCAACCCAGATCCGTTCGATATGCGTGTGTTCAAGCGCGGACCGGGCACCAAGGATAGCCCGAACCTGATTCCATCGGCATTCGATGCTCGTCTAGTCGGCTGTGTTTGCGAGGAAGACCAGACCTATGTCCAGTGGATGTGGCTGCACCAGGGCCAGCCGAAGCGTTGCGAATGCGGACACTGGTTCAAACTGGTCGAGAAGGCTCCAGTCTAAACGGTGGCATACCATCCCACACCTCTTGCTCTGTATCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6963#0 ATGCCGGGACTGTTGGGCCTCCGGGGCGGCGGAACTGGTGCACTTATTAGTTAAACCAAT 60 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 ------------------------------------------------------------ consensus_6963#0 CGCCTCCGGGCGCTTTTAGTTTAAATCTGGATAAGGATGCCGATCGTACGGTCGCTTTCG 120 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 ------------------------------------------------------------ consensus_6963#0 ACTTACGACAGATCTTTCAAATGTCTGCCCTATCAACTATTGATGGTAGTGTAGAGGACT 180 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 ------------------------------------------------------------ consensus_6963#0 ACCATGGTTGCGACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAA 240 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 ------------------------------------------------------------ consensus_6963#0 ATGGCTACCACATCCAAGGAAAGCAGCAGGCGCGTAAATTACCCAATCCCGGCACGGGGA 300 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 ------------------------------------------------------------ consensus_6963#0 GGTAGTGACGAGAAATAACAATATGGACCTCTCTAACGATGGTCCATAATTGGAATGAGT 360 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 ------------------------------------------------------------ consensus_6963#0 TGAGCATAAATCCCTTTGCAAGGATCAAGTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGG 420 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 ------------------------------------------------------------ consensus_6963#0 TAATTCCAGCTCCACTAGCGTATATTAAAGTTGTTGCGGTTAAAACGTTCGAAGTTGATA 480 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 --------------------------------------------------CCGCCCACGC 10 consensus_6963#0 CCCCGTCCAGACTCGCGTCCCTTTTCGCTAAAGTGCGTTCGCGAGACGTGTTGCGACTTC 540 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 GTCCGCCCACGCGTCCGCAGCATCCGGAAAATTCACTATTTTGGCTCGTCAACTGAGCAC 70 consensus_6963#0 GGATTTAGTCTGCAAATAAAGAACGATCCCAAGATGAGTACTGCAACGATTCGTACCCGT 600 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 CAGCTCGGCCGCCGCTCAGCTGGTCAAGCCACCGGTGCAGGTCTTCGGACTGGAGGGCCG 130 consensus_6963#0 CGCTACATGAGCAACCGGCTGCTGTGCCGCAAGCAGATGGAAAGCGACGTCCTCCACCCT 660 consensus_6963#2 ------------------------------------------------------------ consensus_6963#1 CTATGCCTGTGCGCTCTATTCCGCTGCCTCCAAGACCAAGGCGCTCGATGCGGTCGAGAA 190 consensus_6963#0 GGCCTCGCCTCGGTCTCGAAG--AAGGAGATCCGCGAGAAGC---TCGCCGTCATGTACA 715 consensus_6963#2 -------------CCGCGAAA--AGGCACACTTTTTCACATCGTTTCCCCGTCGCGTGCA 45 consensus_6963#1 GGATCTGAAGGGGCTGCAGAGCCAGATGCGCTCGGATCCGAAGATGCGCGATCTGCTGCG 250 * * * * * ** * * consensus_6963#0 AAACC--ACGCCGGACGTCGTGTTCGTGTTCGGTTTCCGCACGAACTTCGGTGGCGGCAA 773 consensus_6963#2 AAAGC--ATCC---ACACCAATGGCGT---CGCTGTGCGGAAGAATTGTGCTGGCTGCG- 96 consensus_6963#1 TGACCCGACGACGAAGCGCAACGTAAAGGCCGCCGCACTGAAGGATGTCGCCGCTAAGGT 310 * * * * * ** * * * * * * consensus_6963#0 GTCGACCGGTTTCGCCCTCATCTACG-ACACCCTGGACCACGCCAAGAAGTTCGAGCCCA 832 consensus_6963#2 GCCAAGCGA----AACGTGACCTACACGCCCGTTCGATTTTGCAAAATGAT--GAAC--- 147 consensus_6963#1 GAAGTTCAA---CGCTGCCACCGGCA-ATCTGCTC-ACCCTGCTGGCGGA---GAACGGT 362 * * * * * * * ** ** * consensus_6963#0 AGCACCGTCTCGGCCGCCACGGACTGTACGAGAAGAAGAAGATGACG-CGCAACAGCGCA 891 consensus_6963#2 GACCCGATCGAGCATGCCACCGG-TAT-CGAGAAGCGTGAGCTGCTGGCGAAGCAG-GCA 204 consensus_6963#1 CGCCTCGGC-CGTCTGG-ACGGTATCATCAACGCGTACAGCCTGAT--CATGGCTG-CCG 417 * * * * ** * * * * * ** * * * * consensus_6963#0 AGGAGCGCAAGAAC-CGTATGAAGAAGGTGCG--CGGAC----GAAGAAGGCCAAGGTCG 944 consensus_6963#2 GGCAAC-CCAGATC-CGTTCGATATGCGTGTGTTCAAGC----GCGGACCGGGCACCAAG 258 consensus_6963#1 AGCGGGGCGAGGTCGTGTGTGAGGTGAAGACTGCCAAACCGCTGGATGATGGCCAGCGCA 477 * * ** * ** ** * * * * * consensus_6963#0 GACAGGCCGTCAAGAAGTAAAACGGCGGAACGGTGATGGTGCCGT-AGCTGCTGCTGCTG 1003 consensus_6963#2 GATAGCCCGAACCTGATTCCATCGGCATT-CGATGCTCGTCTAGTCGGCTGTGTTTGCGA 317 consensus_6963#1 AGCAGCTGGAAAATGCTCTCAAGGCATTCCTTAAGCCGAACCAAACGATCCAGCTGACGG 537 ** * * * * * consensus_6963#0 CTGCCAC--GGTTGTTG-TCGCAGTAGAAGTGGTGGCCGCGTGTCCTCAGGCGGTCCGTG 1060 consensus_6963#2 GGAAGACCAGACCTATG-TC-CAGTGGATGTGGCTGCACCAGGGCC--AGCCGAAGCGT- 372 consensus_6963#1 CTAAGGTTGACCCGGCACTTATTGGCGGCATGGTTGTTTCG-ATCGGTGATAAGTACGTC 596 * * * *** * * * *** consensus_6963#0 TTTTAAGTTTATATGTTTTCTCTTGTGCGGAAAAATGGAA-AACATTCCGCTCAAAAGGA 1119 consensus_6963#2 -------TGCGAATGCGGACACTGGTTCAAACTGGTCGAG-AAGGCTCCAGTCTAAACGG 424 consensus_6963#1 -----GACATGAGCGTTGCCAGCAAAATCAAGAAGTACACCGACGTCATTACGGCGCCCG 651 * * * * * * consensus_6963#0 ATGAGAATATAAGCAACAATACCATGTAAGGTATCCCG 1157 consensus_6963#2 T--GGCATACCATCCCACACCTCTTGCTCTGTATCTTA 460 consensus_6963#1 TCTAAAATGTAAGCAAAATCATCTAC------------ 677 ** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||