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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 832 fasta sequence
[ATGCAAGTAGTAGGGCAGCGCTGCAATCCCACAAAACAGGGCGCTCAAAACGTTCGTCAATAATACCCGAAATCCAAGCTATGTTTGCGGACGTTGACGTGGACGTGTTCATTAGCAACTATACAATCATCGATCCGGAAATCTATCAACTATGGGTGGAAGGCTACACATTCGTGGAAGCGGTCACGTTACTTAAGCAAAAGGGTGGCCTATTTGCGGACGTGCCGCCCGAGCTGATCGCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCACCGCCGAAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCTGATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCTGAACGCGCGCAACCGCAAAGACCTGGACGAGGTGGCGGACAAGACGGGCGTGCGGTTGAAATCGTGCCGCCGGCAGTTTGACAACGTGAAGCGCATTTACAAGGCGGTCGAAGAGACGCAGGGCAACCTGGCGTGCAACATCCGGCAGCAGTTCATACTGCCGGAGGAGCTGGCCCAGAAGTACGCGGCGGTAGTGTTTATCGCGTGCCTGCGCTTCGAAACGACCAAGCGGAAGCTGCAATATCTTAACTTTAAGGATTTCTACGAATGTGGACAGGCTTTGATGACCTTCTGGACGTACACGTACCAGCACTCTGGTGCCGATTATCTGGACACCGAGATGGATAAGGAGTTTCTGCTCGACTTGCGTGAGATCCGGTACCTGCTGGACAAGGAGAAAGAATCAAGCACTTG]
[+] EMBL BX626707 [ATGCAAGTAGTAGGGCAGCGCTGCAATCCCACAAAACAGGGCGCTCAAAACGTTCGTCAATAATACCCGAAATCCAAGCTATGTTTGCGGACGTTGACGTGGACGTGTTCATTAGCAACTATACAATCATCGATCCGGAAATCTATCAACTATGGGTGGAAGGCTACACATTCGTGGAAGCGGTCACGTTACTTAAGCAAAAGGGTGGCCTATTTGCGGACGTGCCGCCCGAGCTGATCGCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCACCGCCGAAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCTGATCGAGCACTACTACTCGCTGG ]
[+] EMBL BX627895 [ CCCACAAAACAGGGCGCTCAAAACGTTCGTCAATAATACCCGAAATCCAAGCTATGTTTGCGGACGTTGACGTGGACGTGTTCATTAGCAACTATACAATCATCGATCCGGAAATCTATCAACTATGGGTGGAAGGCTACACATTCGTGGAAGCGGTCACGTTACTTAAGCAAAAGGGTGGCCTATTTGCGGACGTGCCGCCCGAGCTGATCGCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCACCGCCGAAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCTGATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCTGAACGCGCGCAACCGCAAAGACCTGGACGAGGTGGCGGACAAGACGGGCGTGCGGTTGAAATCGTGCCGCCGGCAGTTTGACAACGTGAAGCGCATTTACAAGGCGGTCGAAGAGACGCAGGGCAACCTGGCGTGCAACATCCGGCAGCAGTTCATACTGCCGGAGGAGCTGGCCCAGAAGTACGCGGCGGTAGTGTTTATCGCGTGCCTGCGCTTCGAAACGACCAAGCGGAAGCTGCAATATCTTAACTTTAAGGATTTCTACGAATGTGGACAGGCTTTGATGACCTTCTGGACGTACACGTACCAGCACTCTGGTGCCGATTATCTGGACACCGAGATGGATAAGGAGTTTCTGCTCGACTTGCGTGAGATCCGGTACCTGCTGGACAAGGAGAAAGAATCAAGCACTTG]
[+] EMBL BX602788 [ ATACCCGAAATCCAAGCTATGTTTGCGGACGTTGACGTGGACGTGTTCATTAGCAACTATACAATCATCGATCCGGAAATCTATCAACTATGGGTGGAAGGCTACACATTCGTGGAAGCGGTCACGTTACTTAAGCAAAAGGGCGGCCTATTTGCGGACGTACCGCCGGAGCTGATCGCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCACCACCGAAGCTGTCCTAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCTGATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCTGAACGCGCGCAACCGCAAGGACCTGGACGAGGTGGCGGACAAGACGGGCGTGCGGTTGAAATCGTGCCGCCGGCAGTTTGACAACGTGAAGCGCATTTACAAGGCGGTCGAAGAGACGCAGGGCAACCTGGCGTGCAACATCCGGCAGCAGTTCATACTGCCGG ]
[+] EMBL AGA282652 [ AAGCTATGTTTGCGGACGTTGACGTGGACGTGTTCATTAGCAACTATACAATCATCGATCCGGAAATCTATCAACTATGGGTGGAAGGCTACACATTCGTGGAAGCGGTCACGTTACTTAAGCAAAAGGGTGGCCTATTTGCGGACGTGCCGCCCGAGCTGATCGCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCACCGCCGAAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCTGATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCTGAACGCGCGCAAC ]
consensusID : consensus_6964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[AGGCAGAATCGGCACGTNGACAAACAGGGCGCTCAAAACGTTCGTCAATAATACCCGAAATCCAAGCTATGTTTGCGGACGTTGACGTGGACGTGTTCATTAGCAACTATACAATCATCGATCCGGAAATCTATCAACTATGGGTGGAAGGCTACACATTCGTGGAAGCGGTCACGTTACTTAAGCAAAAGGGTGGCCTATTTGCGGACGTGCCGCCCGAGCTGATCGCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCACCGCCGAAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCTGATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCTGAACGCGCGCAAACGAAAGACCTGGACGAGGTGGCGGACAAGACGGGCGTGCGGTCTGCAACATCGTGCCGCCGGCAGTTTTGACAACGTGAAGCGCATTTACAAAGGGCGGTCGAAGAGACCGCAGGGCAAACCTGGCGTGCAAAAATCCAGGCAGCAGTTCATACTGCGGAGGAGCTGGCCAAGAAGTACGCGGGCGGATAGTGTNAATCGCGGTGCCTGAGCTTCGAAANCGGTCGACAAGAGCNGGAAANGCTTGGGCAANTTATCNTTTNAAAGTTNAAGGGGATTTTCGTAACGGGAATTGTGGAACCAGGGCTTTTGGGAGTGAACACGTTGACTTGGGAACGTTCACACGGTTACCANAGAGAGACATC]
[+] EMBL BX467177 [AGGCAGAATCGGCACGTNGACAAACAGGGCGCTCAAAACGTTCGTCAATAATACCCGAAATCCAAGCTATGTTTGCGGACGTTGACGTGGACGTGTTCATTAGCAACTATACAATCATCGATCCGGAAATCTATCAACTATGGGTGGAAGGCTACACATTCGTGGAAGCGGTCACGTTACTTAAGCAAAAGGGTGGCCTATTTGCGGACGTGCCGCCCGAGCTGATCGCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCACCGCCGAAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCTGATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCTGAACGCGCGCAAACGAAAGACCTGGACGAGGTGGCGGACAAGACGGGCGTGCGGTCTGCAACATCGTGCCGCCGGCAGTTTTGACAACGTGAAGCGCATTTACAAAGGGCGGTCGAAGAGACCGCAGGGCAAACCTGGCGTGCAAAAATCCAGGCAGCAGTTCATACTGCGGAGGAGCTGGCCAAGAAGTACGCGGGCGGATAGTGTNAATCGCGGTGCCTGAGCTTCGAAANCGGTCGACAAGAGCNGGAAANGCTTGGGCAANTTATCNTTTNAAAGTTNAAGGGGATTTTCGTAACGGGAATTGTGGAACCAGGGCTTTTGGGAGTGAACACGTTGACTTGGGAACGTTCACACGGTTACCANAGAGAGACATC]
consensusID : consensus_6964#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[GGCAGAATCCCGAGGTTTTNTATTCGTGGAAGCGGTCNCGTTACTTNAGCAAAAGGGTGGCCTATTATGCGGACGTGCCGCCGAGACTGATCGCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCACCGCCGCAAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCTGATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCTGAACGCGCGCAAACCTGCACAAAAGCACCTTGGACGCAGGTGGCGGCACCAAGACTGGGCGTTGCGGTTGAAATCTGTAGCCCGCCTGTGCATGATTATGCACAACGTGCAAAGGCCGCATTTTACAAGGACGGTCGNGAANGAGACGCAGGGACAACCCTGGGCTGGTGCAAACATCCGGACAGCAGTNTCATAACTGCCCGCGNGANNCGAGCATGGGACCAGAAGGTAACGCGGACAGGGNTAAGGTCGTTTCATACGACGTGNCCTGCGCCTNTCGAAAACGCAACCAAGCGGCNAAGCTGCACATAATCTTAACCTATATCANGGATTTCNTACGAATGTGGGACAGGCTTAGATGACCTTACGTGGAACGTACAACGTACCAAGACACTCTGGGTGCCGGATCAATCTGGACCACCGCAGATGGATNAA]
[+] EMBL AL694541 [GGCAGAATCCCGAGGTTTTNTATTCGTGGAAGCGGTCNCGTTACTTNAGCAAAAGGGTGGCCTATTATGCGGACGTGCCGCCGAGACTGATCGCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCACCGCCGCAAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCTGATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCTGAACGCGCGCAAACCTGCACAAAAGCACCTTGGACGCAGGTGGCGGCACCAAGACTGGGCGTTGCGGTTGAAATCTGTAGCCCGCCTGTGCATGATTATGCACAACGTGCAAAGGCCGCATTTTACAAGGACGGTCGNGAANGAGACGCAGGGACAACCCTGGGCTGGTGCAAACATCCGGACAGCAGTNTCATAACTGCCCGCGNGANNCGAGCATGGGACCAGAAGGTAACGCGGACAGGGNTAAGGTCGTTTCATACGACGTGNCCTGCGCCTNTCGAAAACGCAACCAAGCGGCNAAGCTGCACATAATCTTAACCTATATCANGGATTTCNTACGAATGTGGGACAGGCTTAGATGACCTTACGTGGAACGTACAACGTACCAAGACACTCTGGGTGCCGGATCAATCTGGACCACCGCAGATGGATNAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6964#0 ATGCAAGTAGTAGGGCAGCGCTGCAATCCCACAAAACAGGGCGCTCAAAACGTTCGTCAA 60
consensus_6964#1 ------------AGGCAGAATCGGCACGTNGACAAACAGGGCGCTCAAAACGTTCGTCAA 48
consensus_6964#2 ------------------------------------------------------------
consensus_6964#0 TAATACCCGAAATCCAAGCTATGTTTGCGGACGTTGACGTGGACGTGTTCATTAGCAACT 120
consensus_6964#1 TAATACCCGAAATCCAAGCTATGTTTGCGGACGTTGACGTGGACGTGTTCATTAGCAACT 108
consensus_6964#2 ------------------------------------------------------------
consensus_6964#0 ATACAATCATCGATCCGGAAATCTATCAACTATGGGTGGAAGGCTACACATTCGTGGAAG 180
consensus_6964#1 ATACAATCATCGATCCGGAAATCTATCAACTATGGGTGGAAGGCTACACATTCGTGGAAG 168
consensus_6964#2 ----------------------------GGCAGAATCCCGAGGTTTTNTATTCGTGGAAG 32
* *** * ***********
consensus_6964#0 CGGTCACGTTACTTAAGCAAAAGGGTGGCCTATT-TGCGGACGTGCCGCCCGAGCTGATC 239
consensus_6964#1 CGGTCACGTTACTTAAGCAAAAGGGTGGCCTATT-TGCGGACGTGCCGCCCGAGCTGATC 227
consensus_6964#2 CGGTCNCGTTACTTNAGCAAAAGGGTGGCCTATTATGCGGACGTGCCGCCGAGACTGATC 92
***** ******** ******************* *************** ******
consensus_6964#0 GCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCA 299
consensus_6964#1 GCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCA 287
consensus_6964#2 GCGTCGGACGTGCAGGACCACTACCGCACGTACGCAATGTTGGAAAAGTTTCTGCACGCA 152
************************************************************
consensus_6964#0 CCGCCG-AAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCT 358
consensus_6964#1 CCGCCG-AAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCT 346
consensus_6964#2 CCGCCGCAAGCTGTCCGAGCAGCCAACGTTCCAGATCTGCCCGCAGGACCGTTCGCTGCT 212
****** *****************************************************
consensus_6964#0 GATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCT 418
consensus_6964#1 GATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCT 406
consensus_6964#2 GATCGAGCACTACTACTCGCTGGACGATGCGGTGGCGCGCGAGCTGTTCGGCAAGAAGCT 272
************************************************************
consensus_6964#0 GAACGCGCGCAACC--GCAAAGA-----CCTGGACG-AGGTGGCGGA--CAAGAC-GGGC 467
consensus_6964#1 GAACGCGCGCAAAC--G-AAAGA-----CCTGGACG-AGGTGGCGGA--CAAGAC-GGGC 454
consensus_6964#2 GAACGCGCGCAAACCTGCACAAAAGCACCTTGGACGCAGGTGGCGGCACCAAGACTGGGC 332
************ * * * * * * ****** ********* ****** ****
consensus_6964#0 GT-GCGGTT---GAAATCGTGCCGCCGGC-----AGTTT-GACAACGTGAAG----CGCA 513
consensus_6964#1 GT-GCGGTCTGCAACATCGTGCCGCCGGC-----AGTTTTGACAACGTGAAG----CGCA 504
consensus_6964#2 GTTGCGGTTGAAATCTGTAGCCCGCCTGTGCATGATTATGCACAACGTGCAAAGGCCGCA 392
** ***** ***** * * * * ******** * ****
consensus_6964#0 TTTACAA--GGCGGTCGA---AGAGAC-GCAGGGCAA-CCTGGC---GTGCAACATCC-- 561
consensus_6964#1 TTTACAAAGGGCGGTCGA---AGAGACCGCAGGGCAAACCTGGC---GTGCAAAAATCCA 558
consensus_6964#2 TTTTACAAGGACGGTCGNGAANGAGACGCAGGGACAACCCTGGGCTGGTGCAAACATCCG 452
*** * * ****** ***** ** *** ***** ****** *
consensus_6964#0 GGCAGCAGTT-CATA-CTGCC--GGAGGAGCTGGCCCAGAAGTACGCGG----C--GGTA 611
consensus_6964#1 GGCAGCAGTT-CATA-CTGC---GGAGGAGCTGGCCAAGAAGTACGCGG----GCGGATA 609
consensus_6964#2 GACAGCAGTNTCATAACTGCCCGCGNGANNCGAGCATGGGACCAGAAGGTAACGCGGACA 512
* ******* **** **** * * * ** * * * ** * *
consensus_6964#0 GTGTTTATCGCG-TGCCTGCGCTTCGAA----ACGACCAAGCGGAAGCTGCAATATCTTA 666
consensus_6964#1 GTGTNAATCGCGGTGCCTGAGCTTCGAA----ANCGGTCGACAAGAGCNGGAAANGCTTG 665
consensus_6964#2 GGGNTAAGGTCGTTTCATACGACGTGNCCTGCGCCTNTCGAAAACGCAACCAAGCGGCNA 572
* * * ** * * * * * **
consensus_6964#0 ACTTTAAGGATTTCTACGAATGTGGACAGGCTTTGATGACCTTCTGGACGTACACGTACC 726
consensus_6964#1 GGCAANTTATCNTTTNAAAGTTNAAGGGGATTTTCGTAAC-----GGGAATTGTGGAACC 720
consensus_6964#2 AGCTGCACATAATCTTAACCTATATCANGGATTTCNTACGAATGTGGGACAGGCTTAGAT 632
* * * * *** * **
consensus_6964#0 AGCACTCT-GGTGCCGATTATCTGGACACCGAGAT--GGATAAGGAGTTT--CTGCTCGA 781
consensus_6964#1 AGGGCTTTTGGGAGTGAACACGTTGACTTGGGAAC--GTTCACACGGTTA--CCANA--- 773
consensus_6964#2 GACCTTACGTGGAACGTACAACGTACCAAGACACTCTGGGTGCCGGATCAATCTGGACCA 692
* * * * * * * *
consensus_6964#0 CTTGCGTGAGATCCGGTACCTGCTGGACAAGGAGAAAGAATCAAGCACTTG 832
consensus_6964#1 ---GAGAGACATC-------------------------------------- 783
consensus_6964#2 CCGCAGATGGATNAA------------------------------------ 707
* **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||