These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1096 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTGGGTGTGAAGTTCTCCAAGGAGATGGTGCTGACCAAGGAACAGATCTACCCGATGGAGAACGCCAACATGGAGATGACGCCGATGCAGGAGCGGCTGGTGAAGAAGCTGGGCGCGAACGCGTTCCCGTTCACCTTCCACTTCCCGAGCATGGCGCCGAGCTCGGTGACGCTGCAGGCCGGTGAGGACGACACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCGCCGTCACGCTGACGATCAAGAAGCTCCAGTACGCGCCGGTGTCCCGCGGTCGTCGTCTTCCTTCGTCGCTCGTCAGCAAGGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTACCACGGCGAGAAGATTGCGACCAACATCGTCGTGACGAACAACTCGCGCAAGACTGTCAAGAGCATCAAGTGGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAATTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCTGTCGAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGTCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGAAACCGAGCGCGGATGGTGAGGAGAACAACGAGCCGGATTCGATGTGGAGATGACGCTGGAAGACTTCCAACCGGACGACGACGATAACTGGGTGCCGTACGATGATGAGCCAC] [+] EMBL BM623427 [CCGCGGACGCGTGGGCGGACGCGTGGGTGGGTGTGAAGTTCTCCAAGGAGATGGTGCTGACCAAGGAACAGATCTACCCGATGGAGAACGCCAACATGGAGATGACGCCGATGCAGGAGCGGCTGGTGAAGAAGCTGGGCGCGAACGCGTTCCCGTTCACCTTCCACTTCCCGAGCATGGCGCCGAGCTCGGTGACGCTGCAGGCCGGTGAGGACGACACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCGCCGTCACGCTGACGATCAAGAAGCTCCAGTACGCGCCGGTGTCCCGCGGTCGTCGTCTTCCTTCGTCGCTCGTCAGCAAGGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTACCACGGCGAGAAGATTGCGACCAACATCGTCGTGACGAACAACTCGCGCAAGACTGTCAAGAGCATCAAGTGGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCG ] [+] EMBL BX617917 [ CCCGATCAC CCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAATTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCTGTCGAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGTCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGAAACCGAGCGCGGATGGTGAGGAGAACAACGAGCCGGATTCGATGTGGAGATGACGCTGGAAGACTTCCAACCGGACGACGACGATAACTGGGTGCCGTACGATGATGAGCCAC] consensusID : consensus_6965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 731 fasta sequence [CCGCGGACGCGTGGCCGCGCACTTGTTCAATTTCGTTTGAAATCTCGTTCAGTTCAGCGGTTGGAAAAAGAAACAAATCAGACACCATGGTTGACGCAGCTGTTATGGAAAAGATGGAGGCTGGCTTCGCCAAGCTGGCTGCCTCGGACTCCAAGTCCCTGCTGAAGAAGTACTTGACCAAGGAAGTCTTCGACGCTCTGAAGAACAAGAAGACCTCCTTTGGCTCGACTCTGCTGGACTGCGTCCAGTCTGGTTTCGAGAACCCAGACTCCGGCGTCGGCATCTACGCCCCGGACGCTGAGGCGTACTCCCTGTTCGCTGATTTGTTCGACCCGATCATCGAGGACTACCACAAGGGCTTCAAGAAGACCGACAAGCACCCGGCCAGTGACTTCGGTGATGTGAACGCCTTCGGCAACGTCGACCCGACCGGCGAGTTCGTCGTGTCGACCCGCGTCCGTTGCGGTCGCTCGATGGAGGGCTACCCGTTCAACCCCTGCCTGACCGAGGCCCAGTACAAGGAGATGGAGGGCAAGGTGTCGACCACGCTGTCCGGGCTGGAGGGTGAGCTGAAGGGCAAGTTCTACCCGCTGACCGGCATGGACAAGGCCGTCCAGCAGCAGCTGATCGACGATCACTTCCT-GTTCAAGGAGGGCGACCGTTTCCTGCAGGCCGCGAACGCGTGCCGCTACTGGCCGTCCGGTCGCGGTATCTACCACAACGACAACAAG] [+] EMBL BM630606 [CCGCGGACGCGTGGGCACGCACTTGTTCAATTTCGTTTGAAATCTCGTTCAGTTCAGCGGTTGGAAAAAGAAACAAATCAGACACCATGGTTGACGCAGCTGTTATGGAAAAGATGGAGGCTGGCTTCGCCAAGCTGGCTGCCTCGGACTCCAAGTCCCTGCTGAAGAAGTACTTGACCAAGGAAGTCTTCGACGCTCTGAAGAACAAGAAGACCTCCTTCGGCTCGACTCTGCTGGACTGCGTCCAGTCTGGTTTCGAGAACCCAGACTCCGGCGTCGGCATCTACGCCCCGGACGCTGAGGCGTACTCCCTGTTCGCTGATTTGTTCGACCCGATCATCGAGGACTACCACAAGGGCTTCAAGAAGACCGACAAGCACCCGGCCAGTGACTTCGGTGATGTGAACGCCTTCGGCAACGTCGACCCGACCGGCGAGTTCGTCGTGTCGACCCGCGTCCGTTGCGGTCGCTCGATGGAGGGCTACCCGTTCAACCCCTGCCTGACCGAGGCCCAGTACAAGGAGATGGAGGGCAAGGTGTCGACCACGCTGTCCGGGCTGGAGGGTGAGCTGAAGGGCAAGTTCTACCCGCTGACCGGCATGG ] [+] EMBL BM631803 [ CCGCGCACTTGTTCAATTTCGTTTGAAATCTCGTTCAGTTCAGCGGTTGGAAAAAGAAACAAATCAGACACCATGGTTGACGCAGCTGTTATGGAAAAGATGGAGGCTGGCTTCGCCAAGCTGGCTGCCTCGGACTCCAAGTCCCTGCTGAAGAAGTACTTGACCAAGGAAGTCTTCGACGCTCTGAAGAACAAGAAGACCTCCTTTGGCTCGACTCTGCTGGACTGCGTCCAGTCTGGTTTCGAGAACCCAGACTCCGGCGTCGGCATCTACGCCCCGGACGCTGAGGCGTACTCCCTGTTCGCTGATTTGTTCGACCCGATCATCGAGGACTACCACAAGGGCTTCAAGAAGACCGACAAGCACCCGGCCAGTGACTTCGGTGATGTGAACGCCTTCGGCAACGTCGACCCGACCGGCGAGTTCGTCGTGTCGACCCGCGTCCGTTGCGGTCGCTCGATGGAGGGCTACCCGTTCAACCCCTGCCTGACCGAGGCCCAGTACAAGGAGATGGAGGGCAAGGTGTCGACCACGCTGTCCGGGCTGGAGGGTGAGCTGAAGGGCAAGTTCTACCCGCTGACCGGCATGGACAAGGCCGTCCAGCAGCAGCTGATCGACGATCACTTCCT GTTCAAGGAGGGCGACCGTTTCCTGCAGGCCGCGAACGCGTGCCGCTACTGGCCGTCCGGTCGCGGTATCTACCACAACGACAACAAG] [+] EMBL BM632596 [ CCGCGCACTTGTTCAATTTCGTTTGAAATCTCGTTCAGTTCAGCGGTTGGAAAAAGAAACAAATCAGACACCATGGTTGACGCAGCTGTTATGGAAAAGATGGAGGCTGGCTTCGCCAAGCTGGCTGCCTCGGACTCCAAGTCCCTGCTGAAGAAGTACTTGACCAAGGAAGTCTTCGACGCTCTGAAGAACAAGAAGACCTCCTTTGGCTCGACTCTGCTGGACTGCGTCCAGTCTGGTTTCGAGAACCCAGACTCCGGCGTCGGCATCTACGCCCCGGACGCTGAGGCGTACTCCCTGTTCGCTGATTTGTTCGACCCGATCATCGAGGACTACCACAAGGGCTTCAAGAAGACCGACAAGCACCCGGCCAGTGACTTCGGTGATGTGAACGCCTTCGGCAACGTCGACCCGACCGGCGAGTTCGTCGTGTCGACCCGCGTCCGTTGCGGTCGCTCGATGGAGGGCTACCCGTTCAACCCCTGCCTGACCGAGGCCCAGTACAAGGAGATGGAGGGCAAGGTGTCGACCACGCTGTCCGGGCTGGAGGGTGAGCTGAAGGGCAAGTTCTACCCGCTGACCGGCATGGACAAGGCCGTCCAGCAGCAGCTGATCGACGATCACTTCCTGGTTCAAGGAGGGCGACCGTTTCCTGCAGGCCGCGAACGCGTG ] consensusID : consensus_6965#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCGCCCACGCGTCCGGGCAATTTTGTACGACCAATCTCGAAGCGAGTGAATTGAGGGAGTGAGCTACCGTGTGTGAGAATACTCGTGATACATTTCGAAAGTTCTATCTGATTGTTTGCTCTGTGTTTGCGAAGACACAAACTAACGCGCAGTGATGGTTGTCGCAGTGAAAGTGTTCAAAAAATCCGCCCCGAATGGCAAACTGACCGTCTATCTCGGCAAGCGTGACTGTTTCATCGACCACACCGACTACTGTGACCCGATCGATGGCGTTATCGTGCTGGACGAGGAGTACCTGCGAGGCCGCAAGGTCTTCGGCCAGCTCATCACCACCTACCGCTATGGCCGGGAAGACGATGAGGTGATGGGTGTGAAGTTCTCCAAGGAGATGGTGCTGACCAAGGAACAGATCTACCCGATGGAGAACGCCAACATGGAGATGACGCCGATGCAGGAGCGGCTGGTGAAGAAGCTGGGCGCGAACGCGTTCCCGTTCACCTTCCACTTCCCGAGCATGGCGCCGAGCTCGGTGACGCTGCAGGCCGGTGAGGACGACACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGC] [+] EMBL BM590308 [CCGCCCACGCGTCCGGGCAATTTTGTACGACCAATCTCGAAGCGAGTGAATTGAGGGAGTGAGCTACCGTGTGTGAGAATACTCGTGATACATTTCGAAAGTTCTATCTGATTGTTTGCTCTGTGTTTGCGAAGACACAAACTAACGCGCAGTGATGGTTGTCGCAGTGAAAGTGTTCAAAAAATCCGCCCCGAATGGCAAACTGACCGTCTATCTCGGCAAGCGTGACTGTTTCATCGACCACACCGACTACTGTGACCCGATCGATGGCGTTATCGTGCTGGACGAGGAGTACCTGCGAGGCCGCAAGGTCTTCGGCCAGCTCATCACCACCTACCGCTATGGCCGGGAAGACGATGAGGTGATGGGTGTGAAGTTCTCCAAGGAGATGGTGCTGACCAAGGAACAGATCTACCCGATGGAGAACGCCAACATGGAGATGACGCCGATGCAGGAGCGGCTGGTGAAGAAGCTGGGCGCGAACGCGTTCCCGTTCACCTTCCACTTCCCGAGCATGGCGCCGAGCTCGGTGACGCTGCAGGCCGGTGAGGACGACACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6965#0 CCGCGGACGCGTGGGCGGACGCGTGGGTGGGTGTGAAGTTCTCCAAGGAGATGGTGCTGA 60 consensus_6965#2 ------------------------------------------------------------ consensus_6965#1 ------------------------------------------------------------ consensus_6965#0 CCAAGGAACAGATCTACCCGATGGAGAACGCCAACATGGAGATGACGCCGATGCAGGAGC 120 consensus_6965#2 ------------------------------------------------------------ consensus_6965#1 ------------------------------------------------------------ consensus_6965#0 GGCTGGTGAAGAAGCTGGGCGCGAACGCGTTCCCGTTCACCTTCCACTTCCCGAGCATGG 180 consensus_6965#2 ------------------------------------------------------------ consensus_6965#1 ------------------------------------------------------------ consensus_6965#0 CGCCGAGCTCGGTGACGCTGCAGGCCGGTGAGGACGACACGGGCAAACCGCTCGGCGTCG 240 consensus_6965#2 ------------------------------------------------------------ consensus_6965#1 ------------------------------------------------------------ consensus_6965#0 AGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCG 300 consensus_6965#2 ------------------------------------------------------------ consensus_6965#1 ------------------------------------------------------------ consensus_6965#0 CCGTCACGCTGACGATCAAGAAGCTCCAGTACGCGCCGGTGTCCCGCGGTCGTCGTCTTC 360 consensus_6965#2 ------------------------------------------------------------ consensus_6965#1 ------------------------------------------------------------ consensus_6965#0 CTTCGTCGCTCGTCAGCAAGGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAA 420 consensus_6965#2 ----------------------------------------------CCGCCCACGCGTCC 14 consensus_6965#1 --------------------------------CCGCGGACGCGTGGCCGCGCACTTGTTC 28 * * ** consensus_6965#0 CGCTCGATCGGGA----GATCTACTACCACGGCGAGAAGATTGCGACCAACATC-GTCGT 475 consensus_6965#2 GGGCAATTTTGTA----CGACCAATCTCGAAGCGAGTGAATTGAGGGAGTGAGCTACCGT 70 consensus_6965#1 AATTTCGTTTGAAATCTCGTTCAGTTCAGCGGTTGGAAAAAGAAACAAATCAGACACCAT 88 * * * * * * * * * * * consensus_6965#0 GACGAAC--AACTCGCGCAAGAC-TGTCAAGA---GCATCAAGTGGCTTCGTGGTGCAGC 529 consensus_6965#2 GTGTGAG--AATACTCGTGATACATTTCGAAA---GTTCTATCTGATTGTTTGCTCTGTG 125 consensus_6965#1 GGTTGACGCAGCTGTTATGGAAAAGATGGAGGCTGGCTTCGCCAAGCTGGCTGCCTCG-G 147 * * * * * * * * ** consensus_6965#0 ACTGTGAGGTCACGATGGTGAA-TGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACG 588 consensus_6965#2 TTTGCGAAGACACAA--ACTAA-CGCGCAGTGATG-------GTTGTCGCAGTGAAAGTG 175 consensus_6965#1 ACTCCAAGTCCCTGCTGAAGAAGTACTTGACCAAGGAAGT-CTTCGACGCTCTGAAGAAC 206 * * * ** * * * * * * ** * consensus_6965#0 CGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCG 648 consensus_6965#2 TTCAAAAAATCCGC-----CCCGAATGGCAAACTGACCG---TCTATCTCGGCAAGCGTG 227 consensus_6965#1 AAGAAGACCTCCTTTGGCTCGACTCTGCTGGACTGCGTCCAGTCTGGTTTCGAGAACCCA 266 * * * * * ** ** * * consensus_6965#0 ----CTCGCCTC--CAGCAACAAG--GACCGCCGGGGCAT----TGCGCTCGACGGCCAC 696 consensus_6965#2 ----ACTGTTTCATCGACCACACC--GACTACTGTGACC-------CGATCGATGGCGTT 274 consensus_6965#1 GACTCCGGCGTCGGCATCTACGCCCCGGACGCTGAGGCGTACTCCCTGTTCGCTGATTTG 326 * ** * * ** * * * * * * *** * consensus_6965#0 CTGAAGGAGGAT---GACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAG-TG 752 consensus_6965#2 ATCGTGCTGGAC---GAGGAGTACCTGCGAGGCCGCAAGGTCTTCGGCCAGCTCA---TC 328 consensus_6965#1 TTCGACCCGATCATCGAGGACTACCACAAGGGCTTCAAGAAGACCGACAAGCACCCGGCC 386 * * ** * *** ** * * * ** * consensus_6965#0 TCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCG--CGTCAAGCTCAATTGT 810 consensus_6965#2 ACCACCTACCGCTATGGCCGGGAAGACGATGAGGT-GATGGG--TGTGAAGTTCTCCAAG 385 consensus_6965#1 AGTGACTTCGGTGATGTGAACGCCTTCGGCAACGTCGACCCGACCGGCGAGTTCGTCGTG 446 * * *** * * * * ** ** consensus_6965#0 --GGCACGC-TCGGTGGCGAACTCCAGACGGAC--GTACCGTTCAAGCTGATGAAC-CCA 864 consensus_6965#2 --GAGATG-----GTGCTGACCAAGGAACAGAT--CTACCC-----GATGGAGAACGCCA 431 consensus_6965#1 TCGACCCGCGTCCGTTGCGGTCGCTCGATGGAGGGCTACCC-----GTTCAACCCCTGCC 501 * * ** * * * ** **** * * * * consensus_6965#0 GCACCTGGATC-TGTCGA-GCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAG 922 consensus_6965#2 ACATGGAGATGACGCCGATGCAGGAGCGGCTGG------TGAAGAAGCTG--GGCGCGAA 483 consensus_6965#1 TGACCGAGGCCCAGTACAAGGAGATGGAGGGCAAGGTGTCGACCACGCTGTCCGGGCTGG 561 * * * * * * ** * * ** * consensus_6965#0 AGCGTCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAG 982 consensus_6965#2 CGCGTTCCCGTTC----ACCTTCCACTTC-CCGAGCATGGCGCCGA------GCTCGGTG 532 consensus_6965#1 AGGGTGAGCTGAAGGGCAAGTTCTACC-CGCTGACCGGCATGGACAAGGCCGTCCAGCAG 620 * ** * * * ** * * ** * * * * consensus_6965#0 AAACCGAGCGCGGATGG-TGAGGAGAACAACGAGCCGGATTCGATGTGGAGATGACGCTG 1041 consensus_6965#2 ACGCTGCAGGCCGGTGA-GGACGACACGGGCAAACCG--CTCGGCGTCGAGTACGCGATC 589 consensus_6965#1 CAGCTGATCGACGATCACTTCCTGTTCAAGGAGGGCGACCGTTTCCTGCAGGCCGCGAAC 680 * * * * * ** * ** ** consensus_6965#0 GAAG---ACTTCCAACCGGACGACGACGATAACTGGGTGCCGTACGATGATGAGCCAC 1096 consensus_6965#2 AAGGCGCACGTCGGCGAGGACGAGAGCGACAA--GGGC-------------------- 625 consensus_6965#1 GCGTGCCGCTACTGGCCGTCCGGTCGCGGTATCTACCACAACGACAACAAG------- 731 * * * ** ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||