These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1298 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCGCGATCGAGACAGCATCTCATCTCGCTGGGGGCTCGCGAACTGCACCGCGATAGT--AAAAAAAGAAACCAAAACAAGACCTAAGTGACACACAGTGACAGTGAGTAAGCGCATAGTGTGTGGGTGTGTTGTGTTTGTTGTGTTTGCGCTTCGGTGACAGTTTGACAGTTTAGCTCCAGCTGATCGGATGGAGAACCTTGGATATGCGGGCGGACAGGTGGAGCCGGGGGAGAAAGGCACACAGGCAGCTGATAGTCGATCGGTCGCTTCGCCGATGAATTCCAGCATCACGCTGCAGACGATCAGTGACGACACGAAAACCACGACCTCGACGCGTGATAAATGGGGCCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGTCGGGTTCGGCAACATCTGGAAGTTCCCGTACACGGCACTGAAGCACGGTGGCGGTGCGTTCCTGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAGATGATACTGGGCCAGTTCTCGAGCAGGGGGTGTGTGAAGCTGTACGATCTGGCACCGGCTATGCGAGGCATTGGTGTGGCGCAAACGATCGCAATGTTCGTGGTGATGACATACTACGCGCCGGTGCTAGCCATCACGTTCCGATATTTTGTGGCATCGTTCAGCAGCACCCTGCCGTGGAGCGAGTGCAACCCTGGCTGGGCAAACTGTGTCAATTCCTCGTTCGTGGGACGGCTGGAGCCCACCAACGGCACAGCCGTTGGACTGCAGTCATCCGCCGAGCTGTACTTCCTCAAGGAAGTGATCCACAAAGCACCCTCTCTTGAAGATGGACTAGGCATGCCCGACTGGAAGCTGGCACTGTGCCTGCTGTTCGCGTGGATCGTCGTCGCCACCATCCTGATCCGGGGTGCGAAAAGTACCGGCAAAGCGTCCTACTTTCTGGCCATCTTCCCGTACGTGATCATCATCATACTGCTGCTGCAAACGCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCACACCGCAGTGGGACAAGCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTACGCAGTGCTTCTTTTCGCTCTCGGTCTGTTACGGTGGCATCATCGCGTACTCGTCCTTCAACAACTTCAGCAACAATGTGCACCGTGACGCCGTCATTATCTCCTGGCTCGACACCTTCACCTCGATTGTGGCCGGTTGCATCGTGTTCGGGGTGATCGGCATTTGGCGTATGTTAGTGGG] [+] EMBL BM594332 [CCGCCCACGCGTCCGCCCACGCGTCCGCGCGATCGAGACAGCATCTCATCTCGCTGGGGGCTCGCGAACTGCACCGCGATAGTAAAAAAAAAGAAACCAAAACAAAACCTAAGTGACACACAGTGACAGTGAGTAAGCGCATAGTGTGTGGGTGTGTTGTGTTTGTTGTGTTTGCGCTTCGGTGACAGTTTGACAGTTTAGCTCCAGCTGATCGGATGGAGAACCTTGGATATGCGGGCGGACAGGTGGAGCCGGGGGAGAAAGGCACACAGGCAGCTGATAGTCGATCGGTCGCTTCGCCGATGAATTCCAGCATCACGCTGCAGACGATCAGTGACGACACGAAAACCACGACCTCGACGCGTGATAAATGGGGCCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGTCGGGTTCGGCAACATCTGGAAGTTCCCGTACACGGCACTGAAGCACGGTGGCGGTGCGTTCCTGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAGATGATACTGGGCCAGTTCTCGAGCAGGGGGTGTGTGAAGCTATACGATCTGGCACCGGCTATGCGAGGCATTGGTGTGGCGCAAACGATCGCAAT ] [+] EMBL BM588494 [ CCG GCGATCGAGACAGCATCTCATCTCGCTGGGGGCTCGCGAACTGCACCGCGATAGT AAAAAAAGAAACCAAAACAAGACCTAAGTGACACACAGTGACAGTGAGTAAGCGCATAGTGTGTGGGTGTGTTGTGTTTGTTGTGTTTGCGCTTCGGTGACAGTTTGACAGTTTAGCTCCAGCTGATCGGATGGAGAACCTTGGATATGCGGGCGGACAGGTGGAGCCGGGGGAGAAAGGCACACAGGCAGCTGATAGTCGATCGGTCGCTTCGCCGATGAATTCCAGCATCACGCTGCAGACGATCAGTGACGACACGAAAACCACGACCTCGACGCGTGATAAATGGGGCCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGTCGGGTTTGGCAACATCTGGAAGTTCCCGTACACGGCGCTGAAGCACGGCGGCGGTGCGTTCCTGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAGATGATACTGGGCCAGTTCTCGAGCAGGGGGTGTGTGAAGCTGTACGATCTGGCACCGGCTATGAGAGGCATTGGTGTGGCGCAAACGATCGCAATGTTCGTGGTGATGACATACTACGCGCCGGTGCTAGCCATCACGTTCCGATATTTTGTGGCATCGTTCAGCAGCACCCTGCCGTGGAGCG ] [+] EMBL BM644904 [ ccgggctCGCGATCGAGACAGCATCTCATCTCGCTGGGGGCTCGCGAACTGCACCGCGATAGT AAAAAAAGAAACCAAAACAAGACCTAAGTGACACACAGTGACAGTGAGTAAGCGCATAGTGTGTGGGTGTGTTGTGTTTGTTGTGTTTGCGCTTCGGTGACAGTTTGACAGTTTAGCTCCAGCTGATCGGATGGAGAACCTTGGATATGCGGGCGGACAGGTGGAGCCGGGGGAGAAAGGCACACAGGCAGCTGATAGTCGATCGGTCGCTTCGCCGATGAATTCCAGCATCACGCTGCAGACGATCAGTGACGACACGAAAACCACGACCTCGACGCGTGATAAATGGGGCCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGTCGGGTTTGGCAACATCTGGAAGTTCCCGTACACGGCGCTGAAGCACGGCGGCGGTGCGTTCCTGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAGATGATACTGGGCCAGTTCTCGAGCAGGGGGTGTGTGAAGCTGTACGATCTGGCACCGGCTATGAGAGGCATTGGT ] [+] EMBL AGA282560 [ CATCACACTGCAGACGATCAGTGACGACACGAAAACCACGGCCTCGACGCGTGATAAATGGGGTCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGTCGGGTTCGGCAACATCTGGAAGTTCCCGTACACGGCACTGAAGCACGGTGGCGGTGCGTTCCTGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAGATGATACTGGGCCAATTCTCGAGCAGGGGGTGTGTGAAGCTGTATGATCTGGCACCGGCTATGCGAGGCATTGGAGTGGCGCAAACGATCGCAATGTTCGTGGTGATGACGTACTACGCGCCGGTGCTGGCCATCACGTTCCGGTACTTTGTGGCATCGTTCAGCAGCACCCTACCGTGGAGCGAGTGCAACCCTGGCTGGGCAAACTGTGTCAATTCCTCGTTCGTGGGACGGCTGGAGC ] [+] EMBL BX605785 [ GCGCAAACGATCGCAATGTTCGTGGTGATGACATACTACGCGCCGGTGCTAGCCATCACGTTCCGATATTTTGTGGCATCGTTCAGCAGCACCCTGCCGTGGAGCGAGTGCAACCCTAGCTGGGCAAACTGTGTCAATTCCTCGTTCGTGGGACGGCTGGAGCCCACCAACGGCACAGCCGTTGGACTGCAGTCATCCGCCGAGCTGTACTTCCTCAAGGAAGTGATCCACAAAGCACCCTCTCTTGAAGATGGACTAGGCATGCCCGACTGGAAGCTGGCACTGTGCCTGCTGTTCGCGTGGATCGTCGTCGCCACCATCCTGATCCGGGGTGCGAAAAGTACCGGCAAAGCGTCCTACTTTCTGGCCATCTTCCCGTACGTGATCATCATCATACTGCTGCTGCAAACGCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCACACCGCAGTGGGACAAGCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTACGCAGTGCTTCTTTTCGCTCTCGGTCTGTTACGGTGGCATCATCGCGTACTCGTCCTTCAACAACTTCAGCAACAATGTGCACCGTGACGCCGTCATTATCTCCTGGCTCGACACCTTCACCTCGATTGTGGCCGGTTGCATCGTGTTCGGGGTGATCGGCATTTGGCGTATGTTAGTGGG] consensusID : consensus_6966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence [GCCAGAATCCGCACGAGGGCGTCTACTTTCTGGCCATCTTCCCGTACGTGATCATCATCATACTGCTGCTGCAAACGCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCACACCGCAGTGGGACAAGCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTACGCAGTGCTTCTTTTCGCTCTCGGTCTGTTACGGTGGCATCATCGCGTACTCGTCCTTCAACAACTTCAGCAACAATGTGCACCGTGACGCCGTCATTATCTCCTGGCTCGACACCTTCACCTCGATCGTGGCCGGTTGCATCGTGTTCGGGGTGATCGGCAATTTGGCGTATGTTAGTGGGCAGCCCGACATCCAGAAGCTGGCGCGGGACGGTGCCGGCCTTACCTTCATGACGTACCCGGACGCGATCGCCAAGTTCCAGTTTTTGCCGCAGCTGTTTGCCGCCCTGTTCTTCCTGATGCTGTTCATCGTGGGCGTCGGCAGCAATCTGGGCGTAACGACCAGTATCATTACGGCGATCCGGGACCAGCGGCCCAGCTGCGCCACTGGCAGGTGGTCCTGGGGACCGTCACCGTGGGGTACTTCTTCGGGCTGCTCTACCTAACGCCCGGTGGGTTCGATTTCCTGGACGTGATCGATTACTACGGTGCCAAGTACGTGACGCTTCACGTTTGGCCGTTGCTGGAAGCTCGCTACCGTTGCGTGGGATTTACCGGGGCGTTGGGAATCGGGATCCTGGTCGGCGACANTCCCGGGTTAATGCTNGGGCATCCGAGGACCATCNGGTCCTACTGGGCNGACGTNATGGCTGGAGGACTCTGGNTTTGACACCGGGCGAGGCAACNGCTGTGACAGTTCTNATACTTCAGGCTTT] [+] EMBL BX467511 [GCCAGAATCCGCACGAGGGCGTCTACTTTCTGGCCATCTTCCCGTACGTGATCATCATCATACTGCTGCTGCAAACGCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCACACCGCAGTGGGACAAGCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTACGCAGTGCTTCTTTTCGCTCTCGGTCTGTTACGGTGGCATCATCGCGTACTCGTCCTTCAACAACTTCAGCAACAATGTGCACCGTGACGCCGTCATTATCTCCTGGCTCGACACCTTCACCTCGATCGTGGCCGGTTGCATCGTGTTCGGGGTGATCGGCAATTTGGCGTATGTTAGTGGGCAGCCCGACATCCAGAAGCTGGCGCGGGACGGTGCCGGCCTTACCTTCATGACGTACCCGGACGCGATCGCCAAGTTCCAGTTTTTGCCGCAGCTGTTTGCCGCCCTGTTCTTCCTGATGCTGTTCATCGTGGGCGTCGGCAGCAATCTGGGCGTAACGACCAGTATCATTACGGCGATCCGGGACCAGCGGCCCAGCTGCGCCACTGGCAGGTGGTCCTGGGGACCGTCACCGTGGGGTACTTCTTCGGGCTGCTCTACCTAACGCCCGGTGGGTTCGATTTCCTGGACGTGATCGATTACTACGGTGCCAAGTACGTGACGCTTCACGTTTGGCCGTTGCTGGAAGCTCGCTACCGTTGCGTGGGATTTACCGGGGCGTTGGGAATCGGGATCCTGGTCGGCGACANTCCCGGGTTAATGCTNGGGCATCCGAGGACCATCNGGTCCTACTGGGCNGACGTNATGGCTGGAGGACTCTGGNTTTGACACCGGGCGAGGCAACNGCTGTGACAGTTCTNATACTTCAGGCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6966#0 CCGCCCACGCGTCCGCCCACGCGTCCGCGCGATCGAGACAGCATCTCATCTCGCTGGGGG 60 consensus_6966#1 ------------------------------------------------------------ consensus_6966#0 CTCGCGAACTGCACCGCGATAGTAAAAAAAGAAACCAAAACAAGACCTAAGTGACACACA 120 consensus_6966#1 ------------------------------------------------------------ consensus_6966#0 GTGACAGTGAGTAAGCGCATAGTGTGTGGGTGTGTTGTGTTTGTTGTGTTTGCGCTTCGG 180 consensus_6966#1 ------------------------------------------------------------ consensus_6966#0 TGACAGTTTGACAGTTTAGCTCCAGCTGATCGGATGGAGAACCTTGGATATGCGGGCGGA 240 consensus_6966#1 -----------------------------------------GCCAGAATCCGCACGAGGG 19 * * ** ** * ** consensus_6966#0 CAGGTGGAGCCGGGGGAGAAAGGCACACAGGCAGCTGATAGTCGATCGGTCGCTTCGCCG 300 consensus_6966#1 CGTCTACTTTCTGGCCATCTTCCCGTACGT---GATCATCATCATACTGCTGCTGCAAAC 76 * * * ** * * ** * * ** ** * * *** * consensus_6966#0 ATGAATTCCAG-CATCACGCTGCAGACGATCAGTGACGACACGAAAAC-CAC--GACCTC 356 consensus_6966#1 GCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCACACCGCAGTGGGACAA 136 ** * ** * ** ***** *** ** ** * * * ** * * consensus_6966#0 GACGCGTGATAAATGGGGCCGGGACATTGAGTTTATGCTGTCCTGCATCGCGTACTCGGT 416 consensus_6966#1 GCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTACGCAGTGCTTCTTTTCGCTCTCGGT 196 * ** * ** ** ** * *** ** ** ** * * ** ****** consensus_6966#0 CGGGTTCGGCAACATCTGGAAGTTCCCGTACACGGCACTGAAGCACGGTGGCGGTGCGTT 476 consensus_6966#1 CTGTTACGGTGGCATCATCGCGTACTCGTCCTT--CAAC-AACTTCAGCAACAATGTGCA 253 * * * *** **** ** * *** * ** ** * * * ** * consensus_6966#0 CC-TGCTGCCGTACCTGATCGTGCTGTTCATAGTGGGCCGACCGATCTACTACCTGGAG- 534 consensus_6966#1 CCGTGACGCCGT-CATTATCTCCTGGCTCGACACCTTCACCTCGATC-GTGGCCGGTTGC 311 ** ** ***** * * *** * ** * ***** ** * * consensus_6966#0 ATGATACTGGGCCAGTTCTCGAGCAGGGGGTGTGTGAAGCTGTACGATCTGGCACCGGCT 594 consensus_6966#1 ATCGTGTTCGG--GGTGATCGGCAATTTGGCGTATGTTAGTGGGCAGCCCGACATCCAGA 369 ** * * ** ** *** * ** ** ** ** * * * ** * consensus_6966#0 ATGCGAGGCAT--TGGTGTGGCGCAAACGATCGCAATGTTCGTGGTGATGACATACTACG 652 consensus_6966#1 AGCTGGCGCGGGACGGTGCCGGCCTTACCTTCATGACGTACCCGGACGCGAT-CGCCAAG 428 * * ** **** * * ** ** * ** * ** ** * * * consensus_6966#0 CGCCGGTGCTAGCCATCACGTTCCGATATTTTGTGGCATCGTTCAGCAGCACCCTGCCGT 712 consensus_6966#1 TTCCAGTTTTTGCCGCAGCTGTTTGCCGCCCTGT----TCTTCCTGATGCTGTTCATCGT 484 ** ** * *** * * * *** ** * * * ** *** consensus_6966#0 GGAG--CGAGTGCAACCCTGGCTGGGCAAACTGTGTCAATTCCTCGTTCGTGGGACGGCT 770 consensus_6966#1 GGGCGTCGGCAGCAATCTGGGCGTAACGACCAGTATCATTACGGCGATCCGGGACCAGC- 543 ** ** **** * *** * * * ** *** * * ** ** ** * ** consensus_6966#0 GGAGCCCACCAACGGCACAGCC--GTTGGACTGCAGTCATCCGCCGAGCTGTACTTCCTC 828 consensus_6966#1 --GGCCCAGCTGCGCCACTGGCAGGTGGTCCTGGGGACCGTCACCGTGGGGTACTTCTTC 601 ***** * ** *** * * ** * *** * * * *** * ******* ** consensus_6966#0 AAGGAAGTGATCCACAAAGCACCCTCTCTTGAAGATGGACTAGGCATGCCCGACTGGAAG 888 consensus_6966#1 GGGC---TGCTCTACCTAACGCCCGGTGGGTTCGATTTCCTGGACGTGATCGATTACTAC 658 * ** ** ** * * *** * *** ** * * ** *** * * consensus_6966#0 CTGGCACTGTGCCTGCTGTTCGCGTGGATCGTCGTCGCCACCATCCTGAT-CCGGGGTGC 947 consensus_6966#1 GGTGCCAAGTACGTGACGCTT-CACGTTTGGCCGTTGCTGGAAGCTCGCTACCGTTGCGT 717 ** ** * ** * * * * * * *** ** * * * * *** * * consensus_6966#0 GAAAAGTACCGGCAAAGCGTCCTACTTTCTGGCCATCTTCCCGTACGTGATCATCATCAT 1007 consensus_6966#1 GGGATTTACCGG---GGCGT---------TGGGAATCGG---GATCCTGGTCGGCGACAN 762 * * ****** **** *** *** * * ** ** * ** consensus_6966#0 ACTGCTGCTGCAAACGCTCATGCTAGACGGGGCGATGCAGGGCATCCTGTACTTCATCAC 1067 consensus_6966#1 TCCCGGGTT---AATGCTNGGGCATCCGAGGACCAT-CNGGTCCTACTGGGCNG-ACGTN 817 * * * ** *** ** ** * ** * ** * * *** * * consensus_6966#0 ACCGCAGTGGGACAAGCTGCTCAGCATCGAGGTTTGGTACGAAGCCGTTAC-GCAGTGCT 1126 consensus_6966#1 ATGGCTGGAGGACTCTGGNTTTGACACCG-GGCGAGGCA-ACNGCTGTGACAGTTCTNAT 875 * ** * **** * ** ** ** ** * ** ** ** * * * consensus_6966#0 TCTTTTCGCTCTCGGTCTGTTACGGTGGCATCATCGCGTACTCGTCCTTCAACAACTTCA 1186 consensus_6966#1 ACTTCAGGCTTT------------------------------------------------ 887 *** *** * consensus_6966#0 GCAACAATGTGCACCGTGACGCCGTCATTATCTCCTGGCTCGACACCTTCACCTCGATTG 1246 consensus_6966#1 ------------------------------------------------------------ consensus_6966#0 TGGCCGGTTGCATCGTGTTCGGGGTGATCGGCATTTGGCGTATGTTAGTGGG 1298 consensus_6966#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||