cluster # 6981

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Anopheles gambiae
cluster # 6981 cluster # 6981 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6981#0 length = 886 sequences # 5

consensus_6981#1 length = 534 sequences # 1

consensusID : consensus_6981#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 886
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCACTGGTCGAGACAGTAGACGTCGGCACCCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTTGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCC----GAGAGAGAGAGAGAGACAGGAGGAACATAGTGTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAGGAGACGCTGCGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGCAGTTCCGGCTGCGCATCCAGATAACGCGCGCCGGCCACATCACCGTCTCCATACCGGGCCTGTCCAAGTCGCTCATCCTGACCGTGCACGACGAGCGGCCCCCGATCGAGGTGGAGTACATTAGCTTCGGGTCGCGCATGAACGCGTAACCCGGTGACGTTCTACTTCAAACTGTGTGGATGCGGCTCAGGCCGCCGCCCCGGAAGCAGGCCCTTGCCGAGCAGGAGAGCGCCCCGG]

[+] EMBL BM579296             [CCGCCCACGCGTCCGCCCACGCGTCCGCACTGGTCGAGACAGTAGACGTCGGCACCCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTTGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCC    GAGAGAGAGAGAGAGACAGGAGGAACATAGTGTGCTCCAGCGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCTTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAG                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM627054             [                                              ccgCGGCACCCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTTGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCC      GAGAGAGAGAGAGACAGGAGGAACATAGTGTGCTTCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAGGAGACGCTGCGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGCAGTTCCGGCTGCGCATCCAGATAACGCGCGCCGGCCACATCACCGTCTCCATACCGGGCCTGTCCAAGTCGCTCATCCTGACCGTGCACGACGAGCGGC                                                                                                                                          ]
[+] EMBL BM645521             [                                                    ccgCCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTTGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGAGAGACAGGAGGAACATAGTGTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAGGAGACGCTGCGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGCAGTTCCGGCTGCGCATCCAGATAACGCGCGCCGGgc                                                                                                                                                                                                         ]
[+] EMBL BM651552             [                                                                                                                                                                                                                             CCGGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAGGAGACGCTGCGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGCAGTTCCGGCTGCGCATCCAGATAACGCGCGCCGGCCACATCACCGTCTCCATACCGGGCCTGTCCAAGTCGCTCATCCTGACCGTGCACGACGAGCGGCCCCCGATCGAGGTGGAGTACATTAGCTTCGGGTCGCGCATGAACGCGTAACCCGGTGACGTTCTACTTCAAACTGTGTGGATGCGGCTCAGGCCGCCGCCCCGGAAGCAGGCCCTTGCCGAGCAGGAGAGCGCCCCGG]
[+] EMBL BX615491             [                                                                                                                                                                                                                                                GGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGT                                                                                                                                                                                                                                                                                                                                         ]




>consensus_6981#0
CCGCCCACGCGTCCGCCCACGCGTCCGCACTGGTCGAGACAGTAGACGTCGGCACCCTCG
CGGCCTCGCAGCTCACCGATCGCTTCACACGTTTGCCTGGACACGGGGAAGGGACGAAGG
GCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGACAGGAGGAACATAGTGTGCTCCA
GAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCA
CTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGT
GCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGC
GAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGC
AACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATG
CAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTAC
GGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAGGAGACGCTG
CGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGCAGTTCCGGCTG
CGCATCCAGATAACGCGCGCCGGCCACATCACCGTCTCCATACCGGGCCTGTCCAAGTCG
CTCATCCTGACCGTGCACGACGAGCGGCCCCCGATCGAGGTGGAGTACATTAGCTTCGGG
TCGCGCATGAACGCGTAACCCGGTGACGTTCTACTTCAAACTGTGTGGATGCGGCTCAGG
CCGCCGCCCCGGAAGCAGGCCCTTGCCGAGCAGGAGAGCGCCCCGG

consensusID : consensus_6981#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [CCCCGAGGCTTAAAGTTGAGACACTGGGTCGAGCACAGTAGACGTCGGTACCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTATGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGAGAGACAGGCAGGAACATAGTGTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTATCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCACGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCATCTCCGCCGCGAACCGGTCCCGCCAGCAC]

[+] EMBL AL697561             [CCCCGAGGCTTAAAGTTGAGACACTGGGTCGAGCACAGTAGACGTCGGTACCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTATGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGAGAGACAGGCAGGAACATAGTGTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTATCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCACGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCATCTCCGCCGCGAACCGGTCCCGCCAGCAC]




>consensus_6981#1
CCCCGAGGCTTAAAGTTGAGACACTGGGTCGAGCACAGTAGACGTCGGTACCTCGCGGCC
TCGCAGCTCACCGATCGCTTCACACGTTATGCCTGGACACGGGGAAGGGACGAAGGGCAA
AACGAAATTCATCAGCCGAGAGAGAGAGAGAGAGAGACAGGCAGGAACATAGTGTGCTCC
AGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGC
ACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGG
TGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCAGCACGTGGGCGAAAACTGC
GAGCACCACACGACGACGACGAGCCAGTATCGAGGAGTACTTCGACATCGACCGGATCGG
CAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCACGGTGCGCAACA
TGCAGGAGGAGCTGGCGATCCTGCATCTCCGCCGCGAACCGGTCCCGCCAGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6981#0      CCGCCCACGCGTCCGCCCACGCGTCCGCACTGG-TCGAG-ACAGTAGACGTCGGCACCCT 58
consensus_6981#1      ----CCCCGAGGCT--TAAAGTTGAGACACTGGGTCGAGCACAGTAGACGTCGGTACC-T 53
                          ** ** * *     * *      ****** ***** ************** *** *

consensus_6981#0      CGCGGCCTCGCAGCTCACCGATCGCTTCACACGTT-TGCCTGGACACGGGGAAGGGACGA 117
consensus_6981#1      CGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTATGCCTGGACACGGGGAAGGGACGA 113
                      *********************************** ************************

consensus_6981#0      AGGGCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGACAGG-----AGGAACATAGT 172
consensus_6981#1      AGGGCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGAGAGACAGGCAGGAACATAGT 173
                      **************************************** **      ***********

consensus_6981#0      GTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCAC 232
consensus_6981#1      GTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCAC 233
                      ************************************************************

consensus_6981#0      TGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCC 292
consensus_6981#1      TGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCC 293
                      ************************************************************

consensus_6981#0      TGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCG 352
consensus_6981#1      TGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACC-AGCACGTGGGCG 352
                      *********************************************** ************

consensus_6981#0      AAAACTGCGAGCACCACACGACGACGACGAGCCAGT-TCGAGGAGTACTTCGACATCGAC 411
consensus_6981#1      AAAACTGCGAGCACCACACGACGACGACGAGCCAGTATCGAGGAGTACTTCGACATCGAC 412
                      ************************************ ***********************

consensus_6981#0      CGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCA-GGT 470
consensus_6981#1      CGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCACGGT 472
                      ******************************************************** ***

consensus_6981#0      GCGCAACATGCAGGAGGAGCTGGCGATCCTGC-TCTCCGCCGCGAACCGGTCCCGCCAGC 529
consensus_6981#1      GCGCAACATGCAGGAGGAGCTGGCGATCCTGCATCTCCGCCGCGAACCGGTCCCGCCAGC 532
                      ******************************** ***************************

consensus_6981#0      ACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACA 589
consensus_6981#1      AC---------------------------------------------------------- 534
                      **                                                          

consensus_6981#0      AGGAGACGCTGCGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGC 649
consensus_6981#1      ------------------------------------------------------------
                                                                                  

consensus_6981#0      AGTTCCGGCTGCGCATCCAGATAACGCGCGCCGGCCACATCACCGTCTCCATACCGGGCC 709
consensus_6981#1      ------------------------------------------------------------
                                                                                  

consensus_6981#0      TGTCCAAGTCGCTCATCCTGACCGTGCACGACGAGCGGCCCCCGATCGAGGTGGAGTACA 769
consensus_6981#1      ------------------------------------------------------------
                                                                                  

consensus_6981#0      TTAGCTTCGGGTCGCGCATGAACGCGTAACCCGGTGACGTTCTACTTCAAACTGTGTGGA 829
consensus_6981#1      ------------------------------------------------------------
                                                                                  

consensus_6981#0      TGCGGCTCAGGCCGCCGCCCCGGAAGCAGGCCCTTGCCGAGCAGGAGAGCGCCCCGG 886
consensus_6981#1      ---------------------------------------------------------